Wall clock time and date at job start Sat Apr 11 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47325 * 2 1 4 4 H 1.09005 * 109.47119 * 180.73772 * 3 2 1 5 5 C 1.50702 * 109.46874 * 300.73329 * 3 2 1 6 6 H 1.07998 * 120.00410 * 120.00165 * 5 3 2 7 7 C 1.37879 * 119.99840 * 299.72582 * 5 3 2 8 8 N 1.31517 * 120.00417 * 0.27119 * 7 5 3 9 9 Si 1.86808 * 120.00002 * 180.27524 * 7 5 3 10 10 H 1.48505 * 109.46909 * 90.00057 * 9 7 5 11 11 H 1.48500 * 109.47006 * 209.99647 * 9 7 5 12 12 H 1.48496 * 109.46987 * 329.99935 * 9 7 5 13 13 N 1.46890 * 109.47223 * 60.73137 * 3 2 1 14 14 C 1.46899 * 111.00126 * 85.91322 * 13 3 2 15 15 C 1.50700 * 109.47235 * 175.54248 * 14 13 3 16 16 C 1.39868 * 126.03997 * 90.02950 * 15 14 13 17 17 N 1.30840 * 108.20470 * 179.97438 * 16 15 14 18 18 N 1.40089 * 108.20018 * 359.97438 * 17 16 15 19 19 C 1.46503 * 126.03548 * 180.02562 * 18 17 16 20 20 C 1.52999 * 108.89958 * 103.70395 * 19 18 17 21 21 C 1.52971 * 108.93315 * 222.26424 * 19 18 17 22 22 C 1.55097 * 108.66968 * 90.80398 * 21 19 18 23 23 S 1.83844 * 101.18748 * 41.87276 * 22 21 19 24 24 O 1.42096 * 109.61427 * 211.04869 * 23 22 21 25 25 O 1.42101 * 109.61415 * 77.09490 * 23 22 21 26 26 C 1.53629 * 108.93115 * 345.02430 * 19 18 17 27 27 C 1.34945 * 107.92775 * 359.75836 * 18 17 16 28 28 H 1.09006 * 109.46943 * 305.17050 * 1 2 3 29 29 H 1.09001 * 109.47566 * 65.17183 * 1 2 3 30 30 H 1.09001 * 109.46973 * 185.17628 * 1 2 3 31 31 H 1.09004 * 109.47364 * 239.99800 * 2 1 3 32 32 H 1.08997 * 109.47188 * 119.99892 * 2 1 3 33 33 H 0.96996 * 120.00629 * 180.02562 * 8 7 5 34 34 H 1.00902 * 110.99956 * 209.86347 * 13 3 2 35 35 H 1.09005 * 109.47252 * 295.54347 * 14 13 3 36 36 H 1.09006 * 109.47099 * 55.54447 * 14 13 3 37 37 H 1.08001 * 125.89810 * 359.94775 * 16 15 14 38 38 H 1.08999 * 109.46991 * 59.30418 * 20 19 18 39 39 H 1.09002 * 109.47175 * 179.30220 * 20 19 18 40 40 H 1.09003 * 109.47083 * 299.29938 * 20 19 18 41 41 H 1.09002 * 109.64880 * 210.64638 * 21 19 18 42 42 H 1.09004 * 109.65086 * 330.96031 * 21 19 18 43 43 H 1.08998 * 111.07659 * 283.89446 * 22 21 19 44 44 H 1.09000 * 111.07601 * 159.85193 * 22 21 19 45 45 H 1.09004 * 110.26524 * 0.59556 * 26 19 18 46 46 H 1.08998 * 110.27146 * 122.65918 * 26 19 18 47 47 H 1.08002 * 126.12575 * 180.24261 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 -0.0132 5 6 1.5228 2.1581 -1.2213 6 1 0.9032 3.0358 -1.1111 7 6 1.8454 1.6956 -2.4795 8 7 2.6000 0.6269 -2.6139 9 14 1.2108 2.5872 -3.9935 10 1 2.1862 3.6312 -4.3983 11 1 1.0363 1.6158 -5.1031 12 1 -0.0946 3.2232 -3.6825 13 7 1.5649 2.1299 1.2081 14 6 2.4739 1.8969 2.3383 15 6 2.0155 2.7031 3.5261 16 6 1.1219 2.2773 4.5143 17 7 0.9714 3.2502 5.3760 18 7 1.7662 4.3274 4.9630 19 6 1.8912 5.6177 5.6454 20 6 3.2272 5.6573 6.3900 21 6 1.8749 6.7352 4.6008 22 6 0.4089 7.1947 4.3881 23 16 -0.2123 7.2175 6.1183 24 8 -1.5992 6.9083 6.1313 25 8 0.2676 8.3786 6.7822 26 6 0.7490 5.7559 6.6634 27 6 2.4010 3.9643 3.8288 28 1 -0.3633 0.5920 0.8401 29 1 -0.3634 0.4315 -0.9327 30 1 -0.3633 -1.0235 0.0927 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.8273 0.3017 -3.4990 34 1 1.4444 3.1172 1.0386 35 1 2.4704 0.8375 2.5950 36 1 3.4835 2.2002 2.0611 37 1 0.6391 1.3122 4.5582 38 1 4.0431 5.5240 5.6796 39 1 3.3354 6.6191 6.8913 40 1 3.2548 4.8569 7.1295 41 1 2.4748 7.5745 4.9526 42 1 2.2829 6.3641 3.6606 43 1 -0.1433 6.4758 3.7828 44 1 0.3704 8.1896 3.9446 45 1 0.1214 4.8647 6.6500 46 1 1.1517 5.9200 7.6629 47 1 3.0908 4.5726 3.2626 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332406007.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:47 Heat of formation + Delta-G solvation = -6.542539 kcal Electronic energy + Delta-G solvation = -28208.556312 eV Core-core repulsion = 24326.804213 eV Total energy + Delta-G solvation = -3881.752099 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.37857 -38.83447 -38.17067 -37.83468 -37.15734 -34.69098 -32.95045 -32.35718 -31.59342 -30.58678 -28.94368 -28.09547 -25.60597 -25.30266 -24.80588 -23.21269 -21.18451 -20.74849 -20.56150 -19.92230 -18.68121 -18.10868 -17.62399 -16.92631 -16.83310 -16.76312 -16.15066 -15.81439 -15.39847 -15.32599 -15.16411 -14.85130 -14.80913 -14.41120 -14.19270 -14.15493 -13.72135 -13.58447 -13.38485 -13.34099 -13.28072 -13.20308 -12.87733 -12.83259 -12.76341 -12.56812 -12.52411 -12.43065 -12.35070 -11.86373 -11.82372 -11.70790 -11.38567 -11.33212 -11.17467 -10.72863 -10.48236 -10.28354 -9.35906 -8.81330 -8.04729 -6.16227 -1.04237 0.95246 1.35536 1.43120 1.46290 1.50928 1.54939 1.89207 2.45028 2.46361 2.84291 3.16293 3.21244 3.24308 3.42763 3.70286 3.88920 3.92250 3.99831 4.10997 4.29800 4.34518 4.46874 4.55609 4.58591 4.69800 4.70917 4.75791 4.78244 4.84605 4.90498 4.96385 5.02197 5.06235 5.15170 5.31464 5.37955 5.48586 5.63527 5.74386 5.77413 5.88400 5.97757 6.13395 6.35497 6.61178 6.77643 6.91128 7.14082 7.52794 9.00021 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015475 B = 0.002669 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.954495 B =10486.666338 C =11195.772015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.099 4.099 3 C 0.223 3.777 4 H -0.033 1.033 5 C -0.519 4.519 6 H 0.056 0.944 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.950 3.050 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.270 1.270 13 N -0.675 5.675 14 C 0.143 3.857 15 C -0.233 4.233 16 C 0.059 3.941 17 N -0.322 5.322 18 N -0.366 5.366 19 C 0.197 3.803 20 C -0.163 4.163 21 C -0.142 4.142 22 C -0.564 4.564 23 S 2.392 3.608 24 O -0.981 6.981 25 O -0.953 6.953 26 C -0.588 4.588 27 C 0.065 3.935 28 H 0.055 0.945 29 H 0.028 0.972 30 H 0.031 0.969 31 H 0.054 0.946 32 H 0.021 0.979 33 H 0.259 0.741 34 H 0.330 0.670 35 H 0.061 0.939 36 H 0.020 0.980 37 H 0.187 0.813 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.063 0.937 41 H 0.145 0.855 42 H 0.121 0.879 43 H 0.135 0.865 44 H 0.170 0.830 45 H 0.151 0.849 46 H 0.171 0.829 47 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 13.321 18.342 22.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.137 4.137 3 C 0.114 3.886 4 H -0.016 1.016 5 C -0.558 4.558 6 H 0.075 0.925 7 C -0.182 4.182 8 N -0.557 5.557 9 Si 0.776 3.224 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.194 1.194 13 N -0.306 5.306 14 C 0.013 3.987 15 C -0.244 4.244 16 C -0.126 4.126 17 N -0.143 5.143 18 N -0.149 5.149 19 C 0.113 3.887 20 C -0.221 4.221 21 C -0.181 4.181 22 C -0.696 4.696 23 S 2.579 3.421 24 O -0.978 6.978 25 O -0.950 6.950 26 C -0.718 4.718 27 C -0.081 4.081 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.068 0.932 34 H 0.147 0.853 35 H 0.080 0.920 36 H 0.038 0.962 37 H 0.204 0.796 38 H 0.100 0.900 39 H 0.129 0.871 40 H 0.082 0.918 41 H 0.163 0.837 42 H 0.139 0.861 43 H 0.153 0.847 44 H 0.188 0.812 45 H 0.169 0.831 46 H 0.189 0.811 47 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 0.717 13.827 20.061 24.375 hybrid contribution 1.323 -0.512 -2.484 2.861 sum 2.040 13.315 17.577 22.145 Atomic orbital electron populations 1.21294 0.96226 0.98295 1.00575 1.21307 0.96075 0.97987 0.98368 1.18900 0.90892 0.92042 0.86726 1.01568 1.21462 1.31051 1.11905 0.91350 0.92546 1.25589 0.95396 0.95678 1.01529 1.70017 1.38115 1.24145 1.23388 0.85681 0.78868 0.78334 0.79479 1.20210 1.21444 1.19442 1.60654 1.49026 1.15528 1.05400 1.20049 0.92689 0.98007 0.88001 1.20045 1.06817 0.96650 1.00931 1.23946 0.97481 0.98973 0.92244 1.77095 1.17124 0.95728 1.24401 1.48904 1.34489 1.12022 1.19501 1.20964 0.97172 0.79722 0.90823 1.22491 0.93298 1.05243 1.01107 1.22843 0.95280 0.98689 1.01330 1.30509 1.05954 1.12760 1.20339 1.08927 0.75396 0.77113 0.80706 1.93576 1.31949 1.85396 1.86874 1.93602 1.82404 1.45793 1.73198 1.30748 1.10704 1.21061 1.09287 1.22502 0.99329 0.96367 0.89923 0.92639 0.95264 0.94956 0.92727 0.95985 0.93156 0.85257 0.92020 0.96172 0.79628 0.89954 0.87057 0.91766 0.83692 0.86078 0.84708 0.81224 0.83075 0.81085 0.78595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.65 9.47 71.98 0.68 -3.97 16 2 C -0.10 -4.68 5.59 30.59 0.17 -4.51 16 3 C 0.22 10.68 2.30 44.17 0.10 10.78 16 4 H -0.03 -1.78 7.71 -2.38 -0.02 -1.80 16 5 C -0.52 -26.96 7.39 25.60 0.19 -26.77 16 6 H 0.06 2.89 7.60 -2.91 -0.02 2.86 16 7 C 0.02 0.91 5.31 84.65 0.45 1.36 16 8 N -0.92 -51.48 11.34 21.45 0.24 -51.24 16 9 Si 0.95 42.34 29.54 68.60 2.03 44.37 16 10 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 13 N -0.68 -26.33 5.50 -499.46 -2.75 -29.08 16 14 C 0.14 4.66 6.02 85.56 0.51 5.17 16 15 C -0.23 -6.24 5.57 -20.14 -0.11 -6.35 16 16 C 0.06 1.58 11.96 85.24 1.02 2.60 16 17 N -0.32 -8.12 10.81 -57.02 -0.62 -8.74 16 18 N -0.37 -7.07 3.41 -306.92 -1.05 -8.11 16 19 C 0.20 2.40 1.10 3.80 0.00 2.40 16 20 C -0.16 -1.35 8.17 71.98 0.59 -0.76 16 21 C -0.14 -1.11 5.38 31.30 0.17 -0.94 16 22 C -0.56 -5.69 7.46 72.70 0.54 -5.15 16 23 S 2.39 36.54 6.05 -56.49 -0.34 36.20 16 24 O -0.98 -24.89 18.16 -127.52 -2.32 -27.20 16 25 O -0.95 -18.26 18.16 -127.52 -2.32 -20.58 16 26 C -0.59 -7.64 6.60 72.19 0.48 -7.17 16 27 C 0.07 1.36 10.18 83.54 0.85 2.21 16 28 H 0.05 2.32 7.47 -2.38 -0.02 2.30 16 29 H 0.03 1.37 7.39 -2.39 -0.02 1.35 16 30 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.05 2.94 6.10 -2.39 -0.01 2.92 16 32 H 0.02 0.96 7.58 -2.39 -0.02 0.94 16 33 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 34 H 0.33 12.60 8.13 -89.69 -0.73 11.87 16 35 H 0.06 2.10 7.59 -2.38 -0.02 2.08 16 36 H 0.02 0.67 7.94 -2.38 -0.02 0.65 16 37 H 0.19 4.53 8.06 -2.91 -0.02 4.51 16 38 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.11 0.35 8.11 -2.39 -0.02 0.33 16 40 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.15 0.23 7.81 -2.39 -0.02 0.21 16 42 H 0.12 0.87 6.21 -2.38 -0.01 0.85 16 43 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.17 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.15 2.65 6.47 -2.39 -0.02 2.64 16 46 H 0.17 1.31 7.63 -2.39 -0.02 1.29 16 47 H 0.20 2.86 7.27 -2.91 -0.02 2.83 16 Total: -1.00 -74.67 384.86 -1.22 -75.89 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.25 Total: 19.58 kcal Atomic # 6 Polarization: -36.73 SS G_CDS: 5.64 Total: -31.09 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -4.17 Total: -97.16 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -4.63 Total: -47.78 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: 36.54 SS G_CDS: -0.34 Total: 36.20 kcal Total: -74.67 -1.22 -75.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332406007.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.346 kcal (2) G-P(sol) polarization free energy of solvation -74.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds