Wall clock time and date at job start Sat Apr 11 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47437 * 2 1 4 4 H 1.09002 * 109.47424 * 185.16073 * 3 2 1 5 5 C 1.50706 * 109.46952 * 305.15940 * 3 2 1 6 6 H 1.08003 * 120.00184 * 119.99354 * 5 3 2 7 7 C 1.37881 * 119.99834 * 299.99683 * 5 3 2 8 8 N 1.31518 * 120.00075 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99949 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47125 * 90.00177 * 9 7 5 11 11 H 1.48500 * 109.47055 * 210.00270 * 9 7 5 12 12 H 1.48499 * 109.47129 * 330.00069 * 9 7 5 13 13 N 1.46904 * 109.47005 * 65.15266 * 3 2 1 14 14 C 1.46903 * 110.99287 * 85.90630 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.81881 * 14 13 3 16 16 C 1.39876 * 126.03479 * 269.68785 * 15 14 13 17 17 N 1.30842 * 108.19817 * 179.81767 * 16 15 14 18 18 N 1.40085 * 108.20662 * 0.43976 * 17 16 15 19 19 C 1.46501 * 126.03737 * 179.73756 * 18 17 16 20 20 C 1.52999 * 108.89748 * 226.29216 * 19 18 17 21 21 C 1.52972 * 108.92851 * 107.73992 * 19 18 17 22 22 C 1.55101 * 108.66230 * 209.33386 * 21 19 18 23 23 S 1.83845 * 101.19029 * 41.87373 * 22 21 19 24 24 O 1.42097 * 109.61529 * 211.05460 * 23 22 21 25 25 O 1.42094 * 109.77939 * 77.13626 * 23 22 21 26 26 C 1.53616 * 108.93132 * 344.97345 * 19 18 17 27 27 C 1.34951 * 107.92207 * 359.71964 * 18 17 16 28 28 H 1.09010 * 109.46948 * 54.85234 * 1 2 3 29 29 H 1.08998 * 109.47446 * 294.85161 * 1 2 3 30 30 H 1.09006 * 109.47214 * 174.84566 * 1 2 3 31 31 H 1.09000 * 109.47379 * 119.99544 * 2 1 3 32 32 H 1.09004 * 109.47387 * 239.99960 * 2 1 3 33 33 H 0.96999 * 120.00136 * 180.02562 * 8 7 5 34 34 H 1.00897 * 111.00324 * 321.94994 * 13 3 2 35 35 H 1.08994 * 109.46864 * 294.81046 * 14 13 3 36 36 H 1.08994 * 109.47486 * 54.81733 * 14 13 3 37 37 H 1.07996 * 125.90210 * 359.97438 * 16 15 14 38 38 H 1.09001 * 109.47143 * 60.70095 * 20 19 18 39 39 H 1.09000 * 109.47392 * 180.69922 * 20 19 18 40 40 H 1.09001 * 109.47354 * 300.70235 * 20 19 18 41 41 H 1.08995 * 109.65508 * 329.17432 * 21 19 18 42 42 H 1.09001 * 109.65021 * 89.49566 * 21 19 18 43 43 H 1.09003 * 111.07760 * 283.89683 * 22 21 19 44 44 H 1.08992 * 111.07652 * 159.85266 * 22 21 19 45 45 H 1.09001 * 110.27171 * 242.07157 * 26 19 18 46 46 H 1.09006 * 110.26914 * 4.04598 * 26 19 18 47 47 H 1.07999 * 126.12221 * 180.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0924 5 6 1.4361 2.1888 -1.1616 6 1 0.8268 3.0628 -0.9840 7 6 1.6612 1.7559 -2.4512 8 7 2.4026 0.6914 -2.6675 9 14 0.9121 2.6806 -3.8910 10 1 1.8533 3.7354 -4.3455 11 1 0.6530 1.7345 -5.0060 12 1 -0.3657 3.3068 -3.4663 13 7 1.6546 2.0982 1.2568 14 6 2.6431 1.8367 2.3115 15 6 2.2830 2.6255 3.5441 16 6 2.7167 3.9200 3.8485 17 7 2.1925 4.2673 4.9960 18 7 1.4157 3.1994 5.4635 19 6 0.6586 3.1684 6.7173 20 6 0.9278 1.8395 7.4260 21 6 -0.8344 3.2640 6.3979 22 6 -1.5526 3.9567 7.5854 23 16 -0.3652 5.3023 7.9846 24 8 -0.4187 5.5886 9.3754 25 8 -0.4918 6.3524 7.0358 26 6 1.1364 4.3186 7.6166 27 6 1.4877 2.2044 4.5546 28 1 -0.3633 0.5917 -0.8404 29 1 -0.3634 0.4319 0.9325 30 1 -0.3634 -1.0236 -0.0923 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.5614 0.3870 -3.5747 34 1 0.7319 1.8105 1.5466 35 1 2.6479 0.7731 2.5494 36 1 3.6322 2.1360 1.9648 37 1 3.3692 4.5287 3.2403 38 1 1.9917 1.7550 7.6479 39 1 0.3589 1.8012 8.3549 40 1 0.6249 1.0153 6.7802 41 1 -0.9783 3.8499 5.4902 42 1 -1.2434 2.2637 6.2552 43 1 -1.6676 3.2731 8.4266 44 1 -2.5161 4.3626 7.2777 45 1 1.5649 3.9245 8.5381 46 1 1.8701 4.9294 7.0905 47 1 0.9979 1.2442 4.6217 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332406009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:56 Heat of formation + Delta-G solvation = 20.116044 kcal Electronic energy + Delta-G solvation = -28080.011703 eV Core-core repulsion = 24199.415607 eV Total energy + Delta-G solvation = -3880.596096 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.40852 -38.12165 -37.39437 -36.44803 -36.36848 -33.00334 -31.97467 -31.07578 -30.42379 -29.20270 -28.26129 -26.38738 -25.19548 -23.97644 -23.14255 -22.17455 -20.00351 -19.80450 -19.24745 -19.23400 -17.74387 -16.90412 -16.62701 -16.12800 -15.92141 -15.13667 -14.79651 -14.75535 -14.68885 -14.51970 -13.96855 -13.65452 -13.54578 -13.21854 -13.07398 -13.01000 -12.75602 -12.58800 -12.53503 -12.45215 -12.40926 -12.37155 -12.14126 -11.81973 -11.67989 -11.30737 -11.14420 -10.90278 -10.78911 -10.71942 -10.50953 -10.42313 -9.93092 -9.80119 -9.56531 -9.33707 -8.97558 -8.31959 -8.26970 -7.13447 -5.95345 -3.96422 -0.43022 1.88787 2.00287 2.29258 3.00856 3.07840 3.34528 3.41117 3.45280 3.54649 3.64389 3.83309 3.97573 4.17247 4.31843 4.47375 4.72852 4.85281 4.90208 4.92586 5.00547 5.03941 5.10905 5.26777 5.36380 5.46381 5.50912 5.59222 5.61465 5.78063 6.09135 6.28745 6.32294 6.36421 6.47525 6.58435 6.80074 6.88221 7.03734 7.28558 7.31660 7.52387 7.71636 7.79692 7.92716 8.31949 8.60152 8.66722 9.09942 9.67350 11.11558 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019783 B = 0.002393 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.026589 B =11700.076229 C =12032.238697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.486 4.486 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.679 5.679 14 C 0.132 3.868 15 C -0.204 4.204 16 C 0.074 3.926 17 N -0.306 5.306 18 N -0.377 5.377 19 C 0.209 3.791 20 C -0.164 4.164 21 C -0.139 4.139 22 C -0.576 4.576 23 S 2.386 3.614 24 O -0.936 6.936 25 O -0.917 6.917 26 C -0.597 4.597 27 C 0.050 3.950 28 H 0.069 0.931 29 H 0.026 0.974 30 H 0.022 0.978 31 H 0.010 0.990 32 H 0.092 0.908 33 H 0.258 0.742 34 H 0.325 0.675 35 H 0.021 0.979 36 H 0.072 0.928 37 H 0.184 0.816 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.109 0.891 43 H 0.141 0.859 44 H 0.144 0.856 45 H 0.147 0.853 46 H 0.167 0.833 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.923 0.285 23.487 23.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.185 4.185 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.525 4.525 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.310 5.310 14 C 0.002 3.998 15 C -0.215 4.215 16 C -0.112 4.112 17 N -0.125 5.125 18 N -0.161 5.161 19 C 0.124 3.876 20 C -0.222 4.222 21 C -0.178 4.178 22 C -0.706 4.706 23 S 2.568 3.432 24 O -0.933 6.933 25 O -0.914 6.914 26 C -0.725 4.725 27 C -0.094 4.094 28 H 0.088 0.912 29 H 0.045 0.955 30 H 0.041 0.959 31 H 0.028 0.972 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.142 0.858 35 H 0.039 0.961 36 H 0.091 0.909 37 H 0.201 0.799 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.120 0.880 42 H 0.128 0.872 43 H 0.159 0.841 44 H 0.162 0.838 45 H 0.165 0.835 46 H 0.185 0.815 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.858 2.658 24.469 25.088 hybrid contribution -0.381 -2.125 -1.632 2.706 sum -5.239 0.533 22.837 23.436 Atomic orbital electron populations 1.21594 0.97785 0.98545 1.00733 1.22106 0.94918 1.01268 1.00172 1.19224 0.95949 0.88456 0.85641 0.94948 1.21088 1.30352 1.11390 0.89667 0.92053 1.24909 0.95615 0.95158 0.98712 1.69880 1.39222 1.24011 1.20620 0.86591 0.79652 0.79541 0.82173 1.20822 1.21543 1.19969 1.60819 1.03602 1.63228 1.03330 1.20174 0.97281 0.94370 0.88020 1.20300 1.05448 0.96979 0.98787 1.23832 0.98782 0.95357 0.93248 1.77120 1.11411 1.09524 1.14488 1.48502 1.39252 1.11828 1.16555 1.20415 0.89609 0.96470 0.81103 1.22456 1.04048 0.94577 1.01143 1.22619 0.91264 1.05497 0.98427 1.30569 1.14728 1.18065 1.07257 1.09316 0.80123 0.78343 0.75463 1.93621 1.85135 1.83831 1.30711 1.93684 1.84348 1.50262 1.63123 1.30778 1.21583 1.11237 1.08913 1.22156 1.01508 0.94891 0.90879 0.91227 0.95513 0.95899 0.97157 0.88968 0.93182 0.85752 0.96096 0.90932 0.79866 0.90621 0.89775 0.90563 0.87993 0.87237 0.84083 0.83829 0.83480 0.81546 0.81583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.40 37.15 0.35 -2.30 16 2 C -0.15 -3.26 5.51 -26.73 -0.15 -3.41 16 3 C 0.22 5.12 2.33 -68.86 -0.16 4.96 16 4 H 0.03 0.86 7.70 -51.93 -0.40 0.46 16 5 C -0.49 -12.91 7.25 -34.44 -0.25 -13.16 16 6 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 7 C 0.06 1.52 5.28 -17.82 -0.09 1.42 16 8 N -0.90 -24.95 11.38 55.43 0.63 -24.32 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.68 -13.70 6.19 -109.21 -0.68 -14.37 16 14 C 0.13 2.23 5.99 -4.97 -0.03 2.20 16 15 C -0.20 -2.97 5.66 -105.05 -0.59 -3.57 16 16 C 0.07 1.09 11.96 -17.36 -0.21 0.88 16 17 N -0.31 -4.31 10.80 30.63 0.33 -3.97 16 18 N -0.38 -4.29 3.34 -48.37 -0.16 -4.46 16 19 C 0.21 1.59 1.08 -131.51 -0.14 1.45 16 20 C -0.16 -0.83 7.76 37.16 0.29 -0.54 16 21 C -0.14 -0.88 5.36 -25.63 -0.14 -1.01 16 22 C -0.58 -2.61 7.46 38.27 0.29 -2.32 16 23 S 2.39 19.07 6.05 -107.50 -0.65 18.42 16 24 O -0.94 -9.89 18.16 -57.69 -1.05 -10.94 16 25 O -0.92 -11.60 18.16 -57.69 -1.05 -12.65 16 26 C -0.60 -4.34 6.61 37.48 0.25 -4.09 16 27 C 0.05 0.60 10.43 -17.22 -0.18 0.42 16 28 H 0.07 1.59 6.86 -51.92 -0.36 1.23 16 29 H 0.03 0.48 6.63 -51.93 -0.34 0.14 16 30 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.01 0.20 7.50 -51.93 -0.39 -0.19 16 32 H 0.09 2.36 6.22 -51.93 -0.32 2.03 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.32 6.29 6.69 -39.29 -0.26 6.03 16 35 H 0.02 0.34 7.53 -51.93 -0.39 -0.05 16 36 H 0.07 1.27 7.92 -51.93 -0.41 0.86 16 37 H 0.18 2.42 8.06 -52.49 -0.42 2.00 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.08 0.35 7.26 -51.93 -0.38 -0.03 16 41 H 0.10 0.86 8.04 -51.93 -0.42 0.44 16 42 H 0.11 0.48 7.76 -51.93 -0.40 0.08 16 43 H 0.14 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.14 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.15 0.65 7.63 -51.93 -0.40 0.25 16 46 H 0.17 1.56 6.44 -51.93 -0.33 1.23 16 47 H 0.17 1.54 7.55 -52.49 -0.40 1.15 16 LS Contribution 383.66 15.07 5.78 5.78 Total: -1.00 -35.15 383.66 -9.92 -45.07 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.28 Total: 4.31 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -0.77 Total: -19.06 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 0.12 Total: -47.12 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -2.10 Total: -23.59 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 19.07 SS G_CDS: -0.65 Total: 18.42 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.15 -9.92 -45.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332406009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.187 kcal (2) G-P(sol) polarization free energy of solvation -35.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds