Wall clock time and date at job start Sat Apr 11 2020 06:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47437 * 2 1 4 4 H 1.09002 * 109.47424 * 185.16073 * 3 2 1 5 5 C 1.50706 * 109.46952 * 305.15940 * 3 2 1 6 6 H 1.08003 * 120.00184 * 119.99354 * 5 3 2 7 7 C 1.37881 * 119.99834 * 299.99683 * 5 3 2 8 8 N 1.31518 * 120.00075 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99949 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47125 * 90.00177 * 9 7 5 11 11 H 1.48500 * 109.47055 * 210.00270 * 9 7 5 12 12 H 1.48499 * 109.47129 * 330.00069 * 9 7 5 13 13 N 1.46904 * 109.47005 * 65.15266 * 3 2 1 14 14 C 1.46903 * 110.99287 * 85.90630 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.81881 * 14 13 3 16 16 C 1.39876 * 126.03479 * 269.68785 * 15 14 13 17 17 N 1.30842 * 108.19817 * 179.81767 * 16 15 14 18 18 N 1.40085 * 108.20662 * 0.43976 * 17 16 15 19 19 C 1.46501 * 126.03737 * 179.73756 * 18 17 16 20 20 C 1.52999 * 108.89748 * 226.29216 * 19 18 17 21 21 C 1.52972 * 108.92851 * 107.73992 * 19 18 17 22 22 C 1.55101 * 108.66230 * 209.33386 * 21 19 18 23 23 S 1.83845 * 101.19029 * 41.87373 * 22 21 19 24 24 O 1.42097 * 109.61529 * 211.05460 * 23 22 21 25 25 O 1.42094 * 109.77939 * 77.13626 * 23 22 21 26 26 C 1.53616 * 108.93132 * 344.97345 * 19 18 17 27 27 C 1.34951 * 107.92207 * 359.71964 * 18 17 16 28 28 H 1.09010 * 109.46948 * 54.85234 * 1 2 3 29 29 H 1.08998 * 109.47446 * 294.85161 * 1 2 3 30 30 H 1.09006 * 109.47214 * 174.84566 * 1 2 3 31 31 H 1.09000 * 109.47379 * 119.99544 * 2 1 3 32 32 H 1.09004 * 109.47387 * 239.99960 * 2 1 3 33 33 H 0.96999 * 120.00136 * 180.02562 * 8 7 5 34 34 H 1.00897 * 111.00324 * 321.94994 * 13 3 2 35 35 H 1.08994 * 109.46864 * 294.81046 * 14 13 3 36 36 H 1.08994 * 109.47486 * 54.81733 * 14 13 3 37 37 H 1.07996 * 125.90210 * 359.97438 * 16 15 14 38 38 H 1.09001 * 109.47143 * 60.70095 * 20 19 18 39 39 H 1.09000 * 109.47392 * 180.69922 * 20 19 18 40 40 H 1.09001 * 109.47354 * 300.70235 * 20 19 18 41 41 H 1.08995 * 109.65508 * 329.17432 * 21 19 18 42 42 H 1.09001 * 109.65021 * 89.49566 * 21 19 18 43 43 H 1.09003 * 111.07760 * 283.89683 * 22 21 19 44 44 H 1.08992 * 111.07652 * 159.85266 * 22 21 19 45 45 H 1.09001 * 110.27171 * 242.07157 * 26 19 18 46 46 H 1.09006 * 110.26914 * 4.04598 * 26 19 18 47 47 H 1.07999 * 126.12221 * 180.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0924 5 6 1.4361 2.1888 -1.1616 6 1 0.8268 3.0628 -0.9840 7 6 1.6612 1.7559 -2.4512 8 7 2.4026 0.6914 -2.6675 9 14 0.9121 2.6806 -3.8910 10 1 1.8533 3.7354 -4.3455 11 1 0.6530 1.7345 -5.0060 12 1 -0.3657 3.3068 -3.4663 13 7 1.6546 2.0982 1.2568 14 6 2.6431 1.8367 2.3115 15 6 2.2830 2.6255 3.5441 16 6 2.7167 3.9200 3.8485 17 7 2.1925 4.2673 4.9960 18 7 1.4157 3.1994 5.4635 19 6 0.6586 3.1684 6.7173 20 6 0.9278 1.8395 7.4260 21 6 -0.8344 3.2640 6.3979 22 6 -1.5526 3.9567 7.5854 23 16 -0.3652 5.3023 7.9846 24 8 -0.4187 5.5886 9.3754 25 8 -0.4918 6.3524 7.0358 26 6 1.1364 4.3186 7.6166 27 6 1.4877 2.2044 4.5546 28 1 -0.3633 0.5917 -0.8404 29 1 -0.3634 0.4319 0.9325 30 1 -0.3634 -1.0236 -0.0923 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.5614 0.3870 -3.5747 34 1 0.7319 1.8105 1.5466 35 1 2.6479 0.7731 2.5494 36 1 3.6322 2.1360 1.9648 37 1 3.3692 4.5287 3.2403 38 1 1.9917 1.7550 7.6479 39 1 0.3589 1.8012 8.3549 40 1 0.6249 1.0153 6.7802 41 1 -0.9783 3.8499 5.4902 42 1 -1.2434 2.2637 6.2552 43 1 -1.6676 3.2731 8.4266 44 1 -2.5161 4.3626 7.2777 45 1 1.5649 3.9245 8.5381 46 1 1.8701 4.9294 7.0905 47 1 0.9979 1.2442 4.6217 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332406009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:55 Heat of formation + Delta-G solvation = -6.435823 kcal Electronic energy + Delta-G solvation = -28081.163078 eV Core-core repulsion = 24199.415607 eV Total energy + Delta-G solvation = -3881.747471 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.34477 -38.84889 -38.18659 -38.02422 -37.12389 -34.67424 -33.00425 -32.48075 -31.26124 -30.40425 -28.83402 -28.12699 -25.96824 -25.31491 -24.75839 -23.07948 -21.22349 -20.93226 -20.53907 -19.90471 -18.56424 -18.00105 -17.48626 -17.21839 -16.76785 -16.67396 -16.27821 -15.74766 -15.58907 -15.38173 -15.26273 -14.68706 -14.54775 -14.28942 -14.12270 -14.05196 -13.81498 -13.63620 -13.53149 -13.37641 -13.25110 -13.17046 -12.98332 -12.90335 -12.78919 -12.64913 -12.48629 -12.38651 -12.17680 -11.91677 -11.79550 -11.57118 -11.40695 -11.34553 -11.26869 -10.90423 -10.38214 -10.30149 -9.34122 -8.75114 -8.00899 -6.08517 -1.02073 0.96153 1.35974 1.43882 1.46122 1.55070 1.57234 1.89268 2.49225 2.49784 2.95453 3.07767 3.27581 3.31175 3.49187 3.63647 3.92470 3.93894 3.98233 4.14193 4.30483 4.34815 4.51273 4.55881 4.61831 4.64148 4.68137 4.70318 4.77207 4.79294 4.84371 4.94280 4.95780 5.06807 5.17613 5.20252 5.29940 5.47046 5.51133 5.72372 5.77123 5.82184 5.92931 6.16817 6.40276 6.77493 6.79647 6.97812 7.08508 7.59494 9.03704 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019783 B = 0.002393 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.026589 B =11700.076229 C =12032.238697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.137 4.137 3 C 0.222 3.778 4 H -0.003 1.003 5 C -0.496 4.496 6 H 0.048 0.952 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.946 3.054 10 H -0.283 1.283 11 H -0.285 1.285 12 H -0.271 1.271 13 N -0.684 5.684 14 C 0.142 3.858 15 C -0.233 4.233 16 C 0.054 3.946 17 N -0.328 5.328 18 N -0.367 5.367 19 C 0.196 3.804 20 C -0.165 4.165 21 C -0.142 4.142 22 C -0.539 4.539 23 S 2.378 3.622 24 O -0.968 6.968 25 O -0.978 6.978 26 C -0.593 4.593 27 C 0.072 3.928 28 H 0.040 0.960 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.030 0.970 32 H 0.058 0.942 33 H 0.258 0.742 34 H 0.332 0.668 35 H 0.032 0.968 36 H 0.054 0.946 37 H 0.181 0.819 38 H 0.067 0.933 39 H 0.120 0.880 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.144 0.856 43 H 0.184 0.816 44 H 0.161 0.839 45 H 0.177 0.823 46 H 0.142 0.858 47 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.229 -1.858 25.730 26.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.177 4.177 3 C 0.113 3.887 4 H 0.015 0.985 5 C -0.535 4.535 6 H 0.067 0.933 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.773 3.227 10 H -0.209 1.209 11 H -0.211 1.211 12 H -0.195 1.195 13 N -0.316 5.316 14 C 0.012 3.988 15 C -0.245 4.245 16 C -0.131 4.131 17 N -0.149 5.149 18 N -0.150 5.150 19 C 0.112 3.888 20 C -0.223 4.223 21 C -0.182 4.182 22 C -0.673 4.673 23 S 2.566 3.434 24 O -0.965 6.965 25 O -0.975 6.975 26 C -0.722 4.722 27 C -0.075 4.075 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.150 0.850 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.198 0.802 38 H 0.086 0.914 39 H 0.138 0.862 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.162 0.838 43 H 0.202 0.798 44 H 0.179 0.821 45 H 0.195 0.805 46 H 0.160 0.840 47 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -7.153 0.578 26.754 27.700 hybrid contribution 0.324 -1.496 -2.217 2.694 sum -6.829 -0.918 24.537 25.486 Atomic orbital electron populations 1.21472 0.95962 0.99479 1.00843 1.21935 0.96458 0.99848 0.99468 1.18951 0.93519 0.89481 0.86765 0.98549 1.21317 1.30057 1.11127 0.91012 0.93335 1.25536 0.96078 0.95880 1.00861 1.70004 1.40176 1.25055 1.20885 0.85742 0.78961 0.78426 0.79592 1.20894 1.21118 1.19523 1.60673 1.04680 1.63074 1.03148 1.20007 0.95549 0.95297 0.87941 1.20091 1.08052 0.97161 0.99151 1.23918 0.99507 0.95866 0.93835 1.77108 1.12341 1.11023 1.14443 1.48865 1.38091 1.10702 1.17365 1.20985 0.90026 0.98161 0.79627 1.22569 1.04358 0.92698 1.02650 1.22704 0.90396 1.07113 0.97945 1.30437 1.13246 1.15631 1.07940 1.09256 0.81128 0.79082 0.73983 1.93572 1.85869 1.85097 1.32004 1.93607 1.85508 1.54217 1.64197 1.30721 1.20603 1.10865 1.10025 1.22562 0.99625 0.95750 0.89552 0.94038 0.92964 0.93947 0.95108 0.92316 0.93312 0.84975 0.95020 0.92722 0.80215 0.91410 0.86151 0.89225 0.90477 0.83789 0.79797 0.82086 0.80545 0.84002 0.77997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.71 9.40 71.98 0.68 -4.04 16 2 C -0.14 -6.11 5.51 30.59 0.17 -5.94 16 3 C 0.22 10.71 2.33 44.17 0.10 10.82 16 4 H 0.00 -0.19 7.70 -2.39 -0.02 -0.21 16 5 C -0.50 -26.82 7.25 25.60 0.19 -26.64 16 6 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 7 C 0.01 0.79 5.28 84.65 0.45 1.23 16 8 N -0.92 -52.18 11.38 21.45 0.24 -51.94 16 9 Si 0.95 43.94 29.54 68.60 2.03 45.97 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 11 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 13 N -0.68 -27.52 6.19 -499.44 -3.09 -30.62 16 14 C 0.14 4.77 5.99 85.56 0.51 5.28 16 15 C -0.23 -6.64 5.66 -20.14 -0.11 -6.75 16 16 C 0.05 1.63 11.96 85.24 1.02 2.65 16 17 N -0.33 -9.33 10.80 -57.02 -0.62 -9.94 16 18 N -0.37 -7.63 3.34 -306.94 -1.03 -8.65 16 19 C 0.20 2.32 1.08 3.80 0.00 2.33 16 20 C -0.16 -0.81 7.76 71.98 0.56 -0.25 16 21 C -0.14 -1.19 5.36 31.30 0.17 -1.03 16 22 C -0.54 -2.50 7.46 72.70 0.54 -1.96 16 23 S 2.38 35.77 6.05 -56.49 -0.34 35.43 16 24 O -0.97 -19.70 18.16 -127.50 -2.32 -22.01 16 25 O -0.98 -25.88 18.16 -127.50 -2.32 -28.19 16 26 C -0.59 -7.68 6.61 72.19 0.48 -7.20 16 27 C 0.07 1.52 10.43 83.54 0.87 2.40 16 28 H 0.04 1.85 6.86 -2.38 -0.02 1.83 16 29 H 0.05 1.75 6.63 -2.39 -0.02 1.74 16 30 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.03 1.21 7.50 -2.39 -0.02 1.19 16 32 H 0.06 3.03 6.22 -2.38 -0.01 3.01 16 33 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 34 H 0.33 12.36 6.69 -89.70 -0.60 11.76 16 35 H 0.03 0.99 7.53 -2.39 -0.02 0.97 16 36 H 0.05 1.99 7.92 -2.39 -0.02 1.97 16 37 H 0.18 5.17 8.06 -2.91 -0.02 5.15 16 38 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 40 H 0.09 0.26 7.26 -2.39 -0.02 0.24 16 41 H 0.08 1.11 8.04 -2.39 -0.02 1.09 16 42 H 0.14 0.33 7.76 -2.39 -0.02 0.31 16 43 H 0.18 -0.59 8.14 -2.39 -0.02 -0.61 16 44 H 0.16 0.39 8.14 -2.39 -0.02 0.38 16 45 H 0.18 1.10 7.63 -2.39 -0.02 1.08 16 46 H 0.14 2.71 6.44 -2.38 -0.02 2.70 16 47 H 0.20 2.72 7.55 -2.91 -0.02 2.70 16 Total: -1.00 -80.94 383.66 -1.44 -82.38 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.38 Total: 16.68 kcal Atomic # 6 Polarization: -34.72 SS G_CDS: 5.62 Total: -29.10 kcal Atomic # 7 Polarization: -96.66 SS G_CDS: -4.49 Total: -101.15 kcal Atomic # 8 Polarization: -45.58 SS G_CDS: -4.63 Total: -50.21 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 35.77 SS G_CDS: -0.34 Total: 35.43 kcal Total: -80.94 -1.44 -82.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332406009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.944 kcal (2) G-P(sol) polarization free energy of solvation -80.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds