Wall clock time and date at job start Sat Apr 11 2020 06:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47601 * 2 1 4 4 H 1.09003 * 109.46726 * 305.64737 * 3 2 1 5 5 C 1.50693 * 109.47065 * 185.64452 * 3 2 1 6 6 H 1.08002 * 119.99865 * 239.99854 * 5 3 2 7 7 C 1.37873 * 120.00484 * 60.00318 * 5 3 2 8 8 N 1.31520 * 119.99597 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00385 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47377 * 89.99779 * 9 7 5 11 11 H 1.48499 * 109.47309 * 209.99461 * 9 7 5 12 12 H 1.48504 * 109.47140 * 329.99863 * 9 7 5 13 13 N 1.46895 * 109.46791 * 65.64212 * 3 2 1 14 14 C 1.46897 * 111.00243 * 205.21486 * 13 3 2 15 15 C 1.50700 * 109.47625 * 185.20791 * 14 13 3 16 16 C 1.39869 * 126.03835 * 269.69100 * 15 14 13 17 17 N 1.30839 * 108.20198 * 179.81641 * 16 15 14 18 18 N 1.40079 * 108.20227 * 0.44050 * 17 16 15 19 19 C 1.46501 * 126.03838 * 179.73777 * 18 17 16 20 20 C 1.52994 * 108.90312 * 226.29146 * 19 18 17 21 21 C 1.52981 * 108.93172 * 107.73471 * 19 18 17 22 22 C 1.55098 * 108.66542 * 209.33658 * 21 19 18 23 23 S 1.83835 * 101.18957 * 41.87658 * 22 21 19 24 24 O 1.42101 * 109.61683 * 211.04862 * 23 22 21 25 25 O 1.42103 * 109.78357 * 77.13614 * 23 22 21 26 26 C 1.53621 * 108.93087 * 344.97857 * 19 18 17 27 27 C 1.34952 * 107.93072 * 359.71843 * 18 17 16 28 28 H 1.08998 * 109.46894 * 294.41894 * 1 2 3 29 29 H 1.09003 * 109.46656 * 54.40768 * 1 2 3 30 30 H 1.08994 * 109.47607 * 174.41425 * 1 2 3 31 31 H 1.09006 * 109.46847 * 240.00060 * 2 1 3 32 32 H 1.09002 * 109.47352 * 120.00684 * 2 1 3 33 33 H 0.97004 * 119.99553 * 180.02562 * 8 7 5 34 34 H 1.00904 * 111.00576 * 329.17534 * 13 3 2 35 35 H 1.09001 * 109.46959 * 305.20799 * 14 13 3 36 36 H 1.09004 * 109.47029 * 65.20413 * 14 13 3 37 37 H 1.08004 * 125.89704 * 0.02562 * 16 15 14 38 38 H 1.09007 * 109.46992 * 60.69995 * 20 19 18 39 39 H 1.09001 * 109.47445 * 180.69713 * 20 19 18 40 40 H 1.08992 * 109.47421 * 300.70200 * 20 19 18 41 41 H 1.08993 * 109.65514 * 329.18336 * 21 19 18 42 42 H 1.09003 * 109.64949 * 89.49685 * 21 19 18 43 43 H 1.08998 * 111.07700 * 283.89804 * 22 21 19 44 44 H 1.08995 * 111.07438 * 159.85621 * 22 21 19 45 45 H 1.08997 * 110.27019 * 242.06688 * 26 19 18 46 46 H 1.09004 * 110.26983 * 4.04123 * 26 19 18 47 47 H 1.07993 * 126.12913 * 179.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5966 1.9847 -0.8351 5 6 3.5406 1.4446 -0.1397 6 1 4.1541 1.8863 0.6316 7 6 4.1302 0.8829 -1.2523 8 7 3.3831 0.3447 -2.1914 9 14 5.9901 0.8863 -1.4258 10 1 6.5466 -0.3475 -0.8147 11 1 6.3529 0.9327 -2.8650 12 1 6.5495 2.0762 -0.7356 13 7 1.6648 2.0945 1.2617 14 6 1.5793 3.5516 1.0962 15 6 1.3191 4.1948 2.4340 16 6 0.0630 4.4662 2.9862 17 7 0.2426 5.0224 4.1567 18 7 1.6208 5.1319 4.3823 19 6 2.2567 5.7039 5.5717 20 6 3.3721 6.6531 5.1294 21 6 2.8702 4.5728 6.3990 22 6 2.8634 4.9902 7.8927 23 16 1.2016 5.7624 8.0397 24 8 1.2398 6.7946 9.0156 25 8 0.2059 4.7511 8.1114 26 6 1.2084 6.5010 6.3627 27 6 2.2594 4.6171 3.3107 28 1 -0.3633 0.4248 0.9357 29 1 -0.3633 0.5981 -0.8357 30 1 -0.3634 -1.0227 -0.1000 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.7980 -0.0508 -2.9739 34 1 0.7987 1.7197 1.6189 35 1 2.5184 3.9267 0.6893 36 1 0.7652 3.7925 0.4127 37 1 -0.8905 4.2504 2.5271 38 1 2.9477 7.4574 4.5284 39 1 3.8601 7.0748 6.0081 40 1 4.1031 6.1035 4.5365 41 1 2.2829 3.6638 6.2696 42 1 3.8949 4.3943 6.0729 43 1 3.6516 5.7135 8.1012 44 1 2.9502 4.1199 8.5432 45 1 1.4929 7.5519 6.4142 46 1 0.2272 6.3982 5.8993 47 1 3.3291 4.5538 3.1767 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332406010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:00 Heat of formation + Delta-G solvation = 18.067711 kcal Electronic energy + Delta-G solvation = -28070.860139 eV Core-core repulsion = 24190.175220 eV Total energy + Delta-G solvation = -3880.684918 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.36531 -38.07406 -37.37337 -36.37594 -36.22634 -32.90627 -31.94028 -31.38403 -30.41541 -29.29058 -28.22074 -26.57087 -25.16245 -24.06230 -22.52864 -22.11209 -19.93858 -19.70967 -19.46927 -19.20066 -17.63173 -16.86790 -16.51360 -16.25882 -16.02222 -15.08364 -14.85993 -14.78654 -14.67094 -14.36997 -13.93421 -13.76954 -13.59711 -13.24872 -13.12295 -12.86172 -12.76649 -12.51791 -12.45736 -12.39727 -12.34603 -12.15979 -12.06825 -11.88320 -11.64357 -11.25398 -11.16517 -11.13014 -10.86871 -10.70561 -10.62124 -10.30554 -9.95370 -9.68521 -9.59439 -9.31269 -9.08697 -8.33905 -8.19467 -7.15344 -5.96269 -4.00403 -0.40707 1.93570 2.04053 2.32852 3.02125 3.10321 3.30751 3.37587 3.39751 3.57073 3.68267 3.88469 4.02248 4.21997 4.35881 4.44079 4.79749 4.91416 4.95324 5.00609 5.04231 5.11126 5.18414 5.31406 5.31740 5.50319 5.55991 5.59228 5.77779 5.88173 6.04608 6.19591 6.20017 6.42864 6.49410 6.58811 6.85377 6.88077 7.09975 7.11153 7.22542 7.53372 7.79599 7.81911 7.92948 8.35339 8.42389 8.80593 9.07440 9.64428 11.08973 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016935 B = 0.002591 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.005028 B =10805.409209 C =11571.962116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.218 3.782 4 H 0.001 0.999 5 C -0.491 4.491 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.276 1.276 13 N -0.683 5.683 14 C 0.140 3.860 15 C -0.209 4.209 16 C 0.057 3.943 17 N -0.306 5.306 18 N -0.378 5.378 19 C 0.209 3.791 20 C -0.165 4.165 21 C -0.139 4.139 22 C -0.575 4.575 23 S 2.385 3.615 24 O -0.936 6.936 25 O -0.919 6.919 26 C -0.596 4.596 27 C 0.071 3.929 28 H 0.036 0.964 29 H 0.042 0.958 30 H 0.036 0.964 31 H 0.098 0.902 32 H 0.040 0.960 33 H 0.259 0.741 34 H 0.317 0.683 35 H 0.078 0.922 36 H 0.022 0.978 37 H 0.179 0.821 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.147 0.853 46 H 0.166 0.834 47 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.221 12.521 16.752 20.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.019 0.981 5 C -0.530 4.530 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.201 1.201 13 N -0.314 5.314 14 C 0.009 3.991 15 C -0.221 4.221 16 C -0.130 4.130 17 N -0.126 5.126 18 N -0.162 5.162 19 C 0.124 3.876 20 C -0.223 4.223 21 C -0.178 4.178 22 C -0.705 4.705 23 S 2.567 3.433 24 O -0.933 6.933 25 O -0.916 6.916 26 C -0.725 4.725 27 C -0.073 4.073 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.117 0.883 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.134 0.866 35 H 0.096 0.904 36 H 0.040 0.960 37 H 0.196 0.804 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.120 0.880 42 H 0.130 0.870 43 H 0.160 0.840 44 H 0.162 0.838 45 H 0.165 0.835 46 H 0.184 0.816 47 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.744 13.018 18.681 22.837 hybrid contribution 1.192 -0.424 -2.162 2.504 sum -0.553 12.595 16.520 20.781 Atomic orbital electron populations 1.21876 0.99600 0.99667 0.99579 1.21758 0.91248 1.00399 1.02950 1.19153 0.95356 0.89969 0.84420 0.98110 1.21198 0.91336 1.36385 1.04031 0.92181 1.24965 0.97953 0.95773 0.95928 1.69877 1.34595 1.39541 1.09609 0.86570 0.85966 0.78285 0.76932 1.20851 1.21489 1.20090 1.60704 1.36282 1.01781 1.32643 1.20081 1.00270 0.89419 0.89281 1.20328 0.91487 1.09486 1.00770 1.23806 0.99108 0.97835 0.92215 1.77067 0.92572 1.24395 1.18594 1.48534 1.04400 1.48797 1.14455 1.20426 0.91119 0.91970 0.84085 1.22465 0.97161 0.99435 1.03268 1.22623 1.05683 0.98996 0.90512 1.30563 1.22730 1.14037 1.03206 1.09325 0.79061 0.76978 0.77942 1.93621 1.86877 1.56887 1.55962 1.93676 1.54564 1.57511 1.85841 1.30772 1.09387 1.10696 1.21620 1.22220 0.99365 0.98256 0.87478 0.94546 0.93898 0.94479 0.88347 0.94147 0.93122 0.86573 0.90403 0.95990 0.80360 0.90634 0.89785 0.90319 0.88022 0.87048 0.84050 0.83836 0.83477 0.81631 0.81064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.65 37.16 0.36 -2.50 16 2 C -0.13 -2.89 5.36 -26.73 -0.14 -3.03 16 3 C 0.22 5.24 2.02 -68.87 -0.14 5.10 16 4 H 0.00 0.03 7.85 -51.93 -0.41 -0.37 16 5 C -0.49 -13.03 8.55 -34.45 -0.29 -13.33 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.05 1.46 5.29 -17.82 -0.09 1.36 16 8 N -0.90 -25.01 11.29 55.43 0.63 -24.38 16 9 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 13 N -0.68 -13.85 6.25 -109.22 -0.68 -14.54 16 14 C 0.14 2.49 5.94 -4.98 -0.03 2.46 16 15 C -0.21 -3.17 5.66 -105.05 -0.59 -3.76 16 16 C 0.06 0.81 11.96 -17.36 -0.21 0.60 16 17 N -0.31 -4.30 10.80 30.63 0.33 -3.97 16 18 N -0.38 -4.52 3.34 -48.36 -0.16 -4.68 16 19 C 0.21 1.72 1.08 -131.51 -0.14 1.58 16 20 C -0.16 -0.98 7.76 37.15 0.29 -0.69 16 21 C -0.14 -0.97 5.36 -25.63 -0.14 -1.11 16 22 C -0.58 -2.88 7.46 38.27 0.29 -2.59 16 23 S 2.38 19.66 6.05 -107.50 -0.65 19.01 16 24 O -0.94 -10.12 18.16 -57.69 -1.05 -11.17 16 25 O -0.92 -11.66 18.16 -57.69 -1.05 -12.71 16 26 C -0.60 -4.54 6.61 37.48 0.25 -4.29 16 27 C 0.07 0.95 10.43 -17.22 -0.18 0.77 16 28 H 0.04 0.62 6.65 -51.93 -0.35 0.28 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.10 2.57 5.94 -51.93 -0.31 2.26 16 32 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.32 6.05 6.64 -39.29 -0.26 5.79 16 35 H 0.08 1.50 7.92 -51.93 -0.41 1.08 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.18 2.13 8.06 -52.48 -0.42 1.71 16 38 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 39 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.08 0.45 7.26 -51.93 -0.38 0.08 16 41 H 0.10 0.92 8.04 -51.93 -0.42 0.50 16 42 H 0.11 0.61 7.76 -51.93 -0.40 0.21 16 43 H 0.14 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.14 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.15 0.71 7.63 -51.93 -0.40 0.31 16 46 H 0.17 1.58 6.44 -51.93 -0.33 1.25 16 47 H 0.17 1.98 7.55 -52.49 -0.40 1.58 16 LS Contribution 387.03 15.07 5.83 5.83 Total: -1.00 -35.11 387.03 -10.01 -45.13 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.41 Total: 5.07 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -0.78 Total: -19.44 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.11 Total: -47.57 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -2.10 Total: -23.87 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 19.66 SS G_CDS: -0.65 Total: 19.01 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.11 -10.01 -45.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332406010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.194 kcal (2) G-P(sol) polarization free energy of solvation -35.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds