Wall clock time and date at job start Sat Apr 11 2020 06:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47601 * 2 1 4 4 H 1.09003 * 109.46726 * 305.64737 * 3 2 1 5 5 C 1.50693 * 109.47065 * 185.64452 * 3 2 1 6 6 H 1.08002 * 119.99865 * 239.99854 * 5 3 2 7 7 C 1.37873 * 120.00484 * 60.00318 * 5 3 2 8 8 N 1.31520 * 119.99597 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00385 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47377 * 89.99779 * 9 7 5 11 11 H 1.48499 * 109.47309 * 209.99461 * 9 7 5 12 12 H 1.48504 * 109.47140 * 329.99863 * 9 7 5 13 13 N 1.46895 * 109.46791 * 65.64212 * 3 2 1 14 14 C 1.46897 * 111.00243 * 205.21486 * 13 3 2 15 15 C 1.50700 * 109.47625 * 185.20791 * 14 13 3 16 16 C 1.39869 * 126.03835 * 269.69100 * 15 14 13 17 17 N 1.30839 * 108.20198 * 179.81641 * 16 15 14 18 18 N 1.40079 * 108.20227 * 0.44050 * 17 16 15 19 19 C 1.46501 * 126.03838 * 179.73777 * 18 17 16 20 20 C 1.52994 * 108.90312 * 226.29146 * 19 18 17 21 21 C 1.52981 * 108.93172 * 107.73471 * 19 18 17 22 22 C 1.55098 * 108.66542 * 209.33658 * 21 19 18 23 23 S 1.83835 * 101.18957 * 41.87658 * 22 21 19 24 24 O 1.42101 * 109.61683 * 211.04862 * 23 22 21 25 25 O 1.42103 * 109.78357 * 77.13614 * 23 22 21 26 26 C 1.53621 * 108.93087 * 344.97857 * 19 18 17 27 27 C 1.34952 * 107.93072 * 359.71843 * 18 17 16 28 28 H 1.08998 * 109.46894 * 294.41894 * 1 2 3 29 29 H 1.09003 * 109.46656 * 54.40768 * 1 2 3 30 30 H 1.08994 * 109.47607 * 174.41425 * 1 2 3 31 31 H 1.09006 * 109.46847 * 240.00060 * 2 1 3 32 32 H 1.09002 * 109.47352 * 120.00684 * 2 1 3 33 33 H 0.97004 * 119.99553 * 180.02562 * 8 7 5 34 34 H 1.00904 * 111.00576 * 329.17534 * 13 3 2 35 35 H 1.09001 * 109.46959 * 305.20799 * 14 13 3 36 36 H 1.09004 * 109.47029 * 65.20413 * 14 13 3 37 37 H 1.08004 * 125.89704 * 0.02562 * 16 15 14 38 38 H 1.09007 * 109.46992 * 60.69995 * 20 19 18 39 39 H 1.09001 * 109.47445 * 180.69713 * 20 19 18 40 40 H 1.08992 * 109.47421 * 300.70200 * 20 19 18 41 41 H 1.08993 * 109.65514 * 329.18336 * 21 19 18 42 42 H 1.09003 * 109.64949 * 89.49685 * 21 19 18 43 43 H 1.08998 * 111.07700 * 283.89804 * 22 21 19 44 44 H 1.08995 * 111.07438 * 159.85621 * 22 21 19 45 45 H 1.08997 * 110.27019 * 242.06688 * 26 19 18 46 46 H 1.09004 * 110.26983 * 4.04123 * 26 19 18 47 47 H 1.07993 * 126.12913 * 179.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5966 1.9847 -0.8351 5 6 3.5406 1.4446 -0.1397 6 1 4.1541 1.8863 0.6316 7 6 4.1302 0.8829 -1.2523 8 7 3.3831 0.3447 -2.1914 9 14 5.9901 0.8863 -1.4258 10 1 6.5466 -0.3475 -0.8147 11 1 6.3529 0.9327 -2.8650 12 1 6.5495 2.0762 -0.7356 13 7 1.6648 2.0945 1.2617 14 6 1.5793 3.5516 1.0962 15 6 1.3191 4.1948 2.4340 16 6 0.0630 4.4662 2.9862 17 7 0.2426 5.0224 4.1567 18 7 1.6208 5.1319 4.3823 19 6 2.2567 5.7039 5.5717 20 6 3.3721 6.6531 5.1294 21 6 2.8702 4.5728 6.3990 22 6 2.8634 4.9902 7.8927 23 16 1.2016 5.7624 8.0397 24 8 1.2398 6.7946 9.0156 25 8 0.2059 4.7511 8.1114 26 6 1.2084 6.5010 6.3627 27 6 2.2594 4.6171 3.3107 28 1 -0.3633 0.4248 0.9357 29 1 -0.3633 0.5981 -0.8357 30 1 -0.3634 -1.0227 -0.1000 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.7980 -0.0508 -2.9739 34 1 0.7987 1.7197 1.6189 35 1 2.5184 3.9267 0.6893 36 1 0.7652 3.7925 0.4127 37 1 -0.8905 4.2504 2.5271 38 1 2.9477 7.4574 4.5284 39 1 3.8601 7.0748 6.0081 40 1 4.1031 6.1035 4.5365 41 1 2.2829 3.6638 6.2696 42 1 3.8949 4.3943 6.0729 43 1 3.6516 5.7135 8.1012 44 1 2.9502 4.1199 8.5432 45 1 1.4929 7.5519 6.4142 46 1 0.2272 6.3982 5.8993 47 1 3.3291 4.5538 3.1767 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332406010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:58 Heat of formation + Delta-G solvation = -8.072962 kcal Electronic energy + Delta-G solvation = -28071.993683 eV Core-core repulsion = 24190.175220 eV Total energy + Delta-G solvation = -3881.818463 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.34860 -38.83423 -38.15660 -37.90497 -37.12839 -34.59724 -33.28317 -32.56821 -31.30115 -30.49213 -28.85309 -28.32990 -26.01406 -25.33795 -24.13506 -23.10868 -21.42319 -20.93808 -20.51148 -19.90084 -18.42483 -18.27969 -17.49091 -17.23893 -16.77288 -16.70164 -16.21720 -15.89920 -15.57990 -15.48743 -15.26613 -14.86944 -14.49611 -14.37995 -14.02470 -13.81869 -13.77529 -13.57013 -13.45907 -13.35516 -13.24355 -13.17624 -13.01208 -12.96722 -12.94776 -12.67232 -12.59617 -12.43693 -12.18934 -11.93134 -11.81788 -11.63904 -11.49175 -11.28244 -11.20148 -10.98176 -10.37087 -10.30785 -9.33074 -8.86783 -8.00271 -6.12194 -1.02655 0.95998 1.34476 1.45800 1.46773 1.55963 1.56350 1.88273 2.48374 2.49013 2.94672 3.07187 3.25050 3.30021 3.48589 3.62597 3.92725 3.93148 3.98648 4.07319 4.29650 4.47698 4.49783 4.52156 4.58758 4.61406 4.62386 4.68360 4.73393 4.77446 4.82604 4.84493 4.99315 5.07223 5.16823 5.18930 5.26756 5.37621 5.44821 5.65115 5.73911 5.81848 5.95837 6.14123 6.43616 6.60423 6.76054 7.02450 7.08676 7.56938 9.02782 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016935 B = 0.002591 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.005028 B =10805.409209 C =11571.962116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.225 3.775 4 H -0.032 1.032 5 C -0.505 4.505 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.923 5.923 9 Si 0.956 3.044 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.266 1.266 13 N -0.680 5.680 14 C 0.150 3.850 15 C -0.235 4.235 16 C 0.049 3.951 17 N -0.324 5.324 18 N -0.368 5.368 19 C 0.196 3.804 20 C -0.166 4.166 21 C -0.143 4.143 22 C -0.541 4.541 23 S 2.382 3.618 24 O -0.967 6.967 25 O -0.975 6.975 26 C -0.591 4.591 27 C 0.081 3.919 28 H 0.056 0.944 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.258 0.742 34 H 0.325 0.675 35 H 0.059 0.941 36 H 0.020 0.980 37 H 0.192 0.808 38 H 0.068 0.932 39 H 0.121 0.879 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.138 0.862 43 H 0.183 0.817 44 H 0.162 0.838 45 H 0.177 0.823 46 H 0.145 0.855 47 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.935 13.478 18.385 22.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.116 3.884 4 H -0.014 1.014 5 C -0.544 4.544 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.564 5.564 9 Si 0.782 3.218 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.191 1.191 13 N -0.312 5.312 14 C 0.020 3.980 15 C -0.246 4.246 16 C -0.137 4.137 17 N -0.145 5.145 18 N -0.151 5.151 19 C 0.112 3.888 20 C -0.224 4.224 21 C -0.182 4.182 22 C -0.674 4.674 23 S 2.569 3.431 24 O -0.964 6.964 25 O -0.972 6.972 26 C -0.721 4.721 27 C -0.066 4.066 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.143 0.857 35 H 0.078 0.922 36 H 0.038 0.962 37 H 0.208 0.792 38 H 0.087 0.913 39 H 0.139 0.861 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.156 0.844 43 H 0.200 0.800 44 H 0.180 0.820 45 H 0.195 0.805 46 H 0.163 0.837 47 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 0.359 14.008 20.367 24.722 hybrid contribution 0.569 -0.678 -2.633 2.778 sum 0.928 13.330 17.734 22.205 Atomic orbital electron populations 1.21744 0.96479 1.00948 1.00467 1.21592 0.94073 0.99281 1.01006 1.18929 0.94141 0.90432 0.84863 1.01422 1.21481 0.92727 1.36196 1.03962 0.92729 1.25708 1.02206 0.95526 0.95699 1.70021 1.36205 1.40176 1.09969 0.85593 0.80895 0.78529 0.76788 1.20522 1.21445 1.19054 1.60627 1.36853 1.03236 1.30469 1.19891 0.99185 0.87897 0.91060 1.20086 0.92678 1.11589 1.00296 1.24015 0.99463 0.97878 0.92310 1.77065 0.94117 1.24743 1.18534 1.48863 1.03654 1.47601 1.15017 1.20958 0.91780 0.92939 0.83112 1.22570 0.96230 0.98652 1.04973 1.22686 1.06509 0.97484 0.91532 1.30448 1.19704 1.15147 1.02107 1.09153 0.80195 0.76089 0.77630 1.93575 1.87784 1.57847 1.57199 1.93604 1.58118 1.58885 1.86629 1.30719 1.08412 1.12453 1.20479 1.22449 0.99955 0.96948 0.87223 0.92469 0.94434 0.92709 0.91518 0.94695 0.93266 0.85722 0.92241 0.96234 0.79152 0.91296 0.86077 0.89787 0.90353 0.84426 0.79962 0.82046 0.80548 0.83727 0.79221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.22 9.65 71.98 0.69 -4.53 16 2 C -0.12 -5.66 5.36 30.60 0.16 -5.50 16 3 C 0.22 11.01 2.02 44.17 0.09 11.10 16 4 H -0.03 -1.74 7.85 -2.39 -0.02 -1.76 16 5 C -0.50 -27.16 8.55 25.60 0.22 -26.94 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.34 5.29 84.65 0.45 0.79 16 8 N -0.92 -52.55 11.29 21.45 0.24 -52.31 16 9 Si 0.96 42.82 29.54 68.60 2.03 44.85 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 13 N -0.68 -27.76 6.25 -499.48 -3.12 -30.88 16 14 C 0.15 5.41 5.94 85.56 0.51 5.92 16 15 C -0.23 -7.03 5.66 -20.14 -0.11 -7.14 16 16 C 0.05 1.38 11.96 85.24 1.02 2.40 16 17 N -0.32 -8.99 10.80 -57.02 -0.62 -9.60 16 18 N -0.37 -8.27 3.34 -306.93 -1.03 -9.29 16 19 C 0.20 2.70 1.08 3.80 0.00 2.70 16 20 C -0.17 -1.29 7.76 71.98 0.56 -0.74 16 21 C -0.14 -1.53 5.36 31.31 0.17 -1.36 16 22 C -0.54 -3.26 7.46 72.70 0.54 -2.72 16 23 S 2.38 36.57 6.05 -56.49 -0.34 36.22 16 24 O -0.97 -19.88 18.16 -127.50 -2.32 -22.20 16 25 O -0.98 -25.38 18.16 -127.50 -2.32 -27.70 16 26 C -0.59 -8.01 6.61 72.19 0.48 -7.54 16 27 C 0.08 2.02 10.43 83.54 0.87 2.90 16 28 H 0.06 1.89 6.65 -2.39 -0.02 1.88 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 3.57 5.94 -2.38 -0.01 3.56 16 32 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 34 H 0.32 12.30 6.64 -89.69 -0.60 11.70 16 35 H 0.06 2.33 7.92 -2.39 -0.02 2.31 16 36 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.19 4.57 8.06 -2.91 -0.02 4.54 16 38 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 39 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.08 0.61 7.26 -2.39 -0.02 0.59 16 41 H 0.08 1.27 8.04 -2.39 -0.02 1.25 16 42 H 0.14 0.84 7.76 -2.39 -0.02 0.82 16 43 H 0.18 -0.27 8.14 -2.39 -0.02 -0.29 16 44 H 0.16 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.18 1.23 7.63 -2.39 -0.02 1.21 16 46 H 0.14 2.74 6.44 -2.39 -0.02 2.72 16 47 H 0.19 3.94 7.55 -2.91 -0.02 3.92 16 Total: -1.00 -79.09 387.03 -1.45 -80.53 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.37 Total: 21.05 kcal Atomic # 6 Polarization: -36.31 SS G_CDS: 5.65 Total: -30.67 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -4.52 Total: -102.09 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -4.63 Total: -49.90 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 36.57 SS G_CDS: -0.34 Total: 36.22 kcal Total: -79.09 -1.45 -80.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332406010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.460 kcal (2) G-P(sol) polarization free energy of solvation -79.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds