Wall clock time and date at job start Sat Apr 11 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30638 * 125.84873 * 2 1 4 4 C 1.34024 * 109.78387 * 180.02562 * 3 2 1 5 5 C 1.48291 * 125.65186 * 179.97438 * 4 3 2 6 6 C 1.39501 * 119.97472 * 359.71829 * 5 4 3 7 7 C 1.37668 * 120.02581 * 179.76687 * 6 5 4 8 8 C 1.39716 * 119.97115 * 0.49365 * 7 6 5 9 9 C 1.47713 * 120.02624 * 179.74489 * 8 7 6 10 10 O 1.21569 * 120.00078 * 222.78284 * 9 8 7 11 11 N 1.34785 * 119.99977 * 42.77724 * 9 8 7 12 12 C 1.46964 * 120.59102 * 5.63967 * 11 9 8 13 13 C 1.53817 * 108.39410 * 124.75753 * 12 11 9 14 14 N 1.46959 * 108.58024 * 49.63635 * 13 12 11 15 15 C 1.36943 * 120.59537 * 124.62321 * 14 13 12 16 16 H 1.07994 * 119.99870 * 213.55874 * 15 14 13 17 17 C 1.38815 * 119.99612 * 33.55866 * 15 14 13 18 18 N 1.31618 * 120.00468 * 18.27809 * 17 15 14 19 19 Si 1.86799 * 119.99610 * 198.27840 * 17 15 14 20 20 H 1.48500 * 109.47145 * 60.00290 * 19 17 15 21 21 H 1.48504 * 109.47134 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47431 * 300.00200 * 19 17 15 23 23 C 1.46963 * 118.81191 * 304.64436 * 14 13 12 24 24 C 1.46959 * 120.59415 * 185.91907 * 11 9 8 25 25 C 1.39712 * 119.95060 * 359.75868 * 8 7 6 26 26 C 1.37666 * 119.97231 * 0.02562 * 25 8 7 27 27 N 1.31546 * 108.69273 * 0.02562 * 4 3 2 28 28 N 1.34575 * 125.84763 * 180.02562 * 2 1 3 29 29 H 0.97001 * 126.73942 * 359.97438 * 28 2 1 30 30 H 1.09004 * 109.47245 * 89.97009 * 1 2 3 31 31 H 1.08994 * 109.47010 * 209.97654 * 1 2 3 32 32 H 1.09004 * 109.46850 * 329.97257 * 1 2 3 33 33 H 1.07995 * 119.98853 * 0.02776 * 6 5 4 34 34 H 1.07999 * 120.01885 * 180.25509 * 7 6 5 35 35 H 1.09001 * 109.60765 * 244.53809 * 12 11 9 36 36 H 1.09000 * 109.61038 * 5.05383 * 12 11 9 37 37 H 1.09001 * 109.74114 * 289.84714 * 13 12 11 38 38 H 1.09004 * 109.66989 * 169.38624 * 13 12 11 39 39 H 0.96992 * 120.00512 * 179.97438 * 18 17 15 40 40 H 1.08994 * 109.61101 * 295.48288 * 23 14 13 41 41 H 1.09004 * 109.75017 * 175.05441 * 23 14 13 42 42 H 1.09002 * 109.61073 * 354.94690 * 24 11 9 43 43 H 1.09003 * 109.61385 * 115.28889 * 24 11 9 44 44 H 1.08002 * 120.01198 * 180.02562 * 25 8 7 45 45 H 1.08000 * 119.98268 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2720 1.0589 0.0000 4 6 3.5600 0.6880 -0.0006 5 6 4.7240 1.6068 -0.0013 6 6 4.5224 2.9871 -0.0074 7 6 5.6023 3.8410 -0.0032 8 6 6.9005 3.3246 -0.0033 9 6 8.0600 4.2397 -0.0045 10 8 9.0156 4.0091 -0.7198 11 7 8.0585 5.3304 0.7874 12 6 6.9681 5.5570 1.7463 13 6 7.5813 5.7320 3.1460 14 7 8.6669 6.7190 3.0617 15 6 8.6650 7.8276 3.8656 16 1 9.0690 8.7601 3.5003 17 6 8.1437 7.7526 5.1500 18 7 7.9860 6.5812 5.7289 19 14 7.6661 9.3144 6.0567 20 1 6.6200 10.0338 5.2864 21 1 7.1386 8.9652 7.4002 22 1 8.8594 10.1858 6.2041 23 6 9.7544 6.4951 2.0988 24 6 9.1441 6.3174 0.7030 25 6 7.1011 1.9419 -0.0025 26 6 6.0197 1.0900 -0.0022 27 7 3.6203 -0.6261 -0.0015 28 7 2.2951 -1.0908 -0.0005 29 1 2.0048 -2.0164 -0.0006 30 1 -0.3634 0.0005 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8898 0.5143 33 1 3.5188 3.3861 -0.0111 34 1 5.4460 4.9097 -0.0037 35 1 6.4187 6.4568 1.4695 36 1 6.2953 4.6994 1.7445 37 1 7.9794 4.7793 3.4953 38 1 6.8182 6.0858 3.8393 39 1 7.6221 6.5288 6.6265 40 1 10.3071 5.5968 2.3736 41 1 10.4273 7.3526 2.0973 42 1 9.9087 5.9621 0.0121 43 1 8.7466 7.2693 0.3508 44 1 8.1042 1.5417 -0.0022 45 1 6.1746 0.0212 -0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332423333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:03 Heat of formation + Delta-G solvation = 111.666108 kcal Electronic energy + Delta-G solvation = -28737.053492 eV Core-core repulsion = 24757.276105 eV Total energy + Delta-G solvation = -3979.777388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.41560 -40.19928 -38.36335 -36.71839 -34.03552 -33.67624 -32.79875 -31.76658 -31.00537 -30.72208 -30.02517 -28.34123 -26.99812 -24.88399 -23.46519 -23.20938 -22.40893 -21.53331 -21.03596 -20.34574 -18.97383 -18.27595 -17.42258 -16.39413 -16.12165 -16.09788 -15.75228 -15.20180 -14.79209 -14.57649 -14.36006 -14.14242 -13.71657 -13.66465 -13.57923 -13.53385 -13.32374 -13.23769 -13.14805 -12.78195 -12.31246 -12.22025 -12.05899 -11.58773 -11.38674 -11.18379 -10.81415 -10.77229 -10.68437 -10.50264 -10.37859 -10.25500 -10.10382 -10.03315 -9.83996 -9.48136 -8.98172 -8.63438 -8.54476 -8.23945 -6.64471 -5.85852 -3.34263 0.49943 1.34757 1.39837 2.23066 2.54160 3.09979 3.35253 3.39465 3.41376 3.43532 3.50777 3.87070 4.13825 4.37314 4.44753 4.72770 4.79425 4.89259 4.91156 5.02659 5.26349 5.28194 5.30343 5.36074 5.46663 5.61678 5.77191 5.80959 5.86616 5.89384 5.96538 5.99191 6.11539 6.18734 6.31493 6.31965 6.33964 6.39168 6.44840 6.67190 6.75265 6.82071 6.92755 7.18827 7.38853 7.71402 7.75005 7.86941 8.39561 8.49032 9.12260 9.74110 10.35158 11.21583 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013049 B = 0.002614 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.202467 B =10708.915391 C =12253.648355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.285 3.715 3 N -0.529 5.529 4 C 0.275 3.725 5 C -0.007 4.007 6 C -0.080 4.080 7 C -0.091 4.091 8 C -0.099 4.099 9 C 0.551 3.449 10 O -0.551 6.551 11 N -0.588 5.588 12 C 0.071 3.929 13 C 0.162 3.838 14 N -0.589 5.589 15 C -0.263 4.263 16 H 0.064 0.936 17 C 0.010 3.990 18 N -0.896 5.896 19 Si 0.902 3.098 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.132 3.868 24 C 0.095 3.905 25 C -0.073 4.073 26 C -0.088 4.088 27 N -0.304 5.304 28 N -0.484 5.484 29 H 0.441 0.559 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.026 0.974 38 H 0.089 0.911 39 H 0.256 0.744 40 H 0.024 0.976 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.136 0.864 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.216 -13.948 -12.143 23.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.007 3.993 3 N -0.257 5.257 4 C -0.004 4.004 5 C -0.009 4.009 6 C -0.100 4.100 7 C -0.109 4.109 8 C -0.103 4.103 9 C 0.339 3.661 10 O -0.431 6.431 11 N -0.319 5.319 12 C -0.053 4.053 13 C 0.035 3.965 14 N -0.312 5.312 15 C -0.392 4.392 16 H 0.082 0.918 17 C -0.190 4.190 18 N -0.539 5.539 19 Si 0.731 3.269 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.207 1.207 23 C 0.005 3.995 24 C -0.029 4.029 25 C -0.092 4.092 26 C -0.109 4.109 27 N -0.133 5.133 28 N -0.202 5.202 29 H 0.287 0.713 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.044 0.956 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.042 0.958 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.154 0.846 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.221 -14.121 -12.301 23.515 hybrid contribution -0.730 0.017 0.715 1.021 sum -14.951 -14.104 -11.586 23.594 Atomic orbital electron populations 1.20426 0.83399 1.05238 1.04683 1.24418 0.96717 0.82651 0.95542 1.70476 1.00941 1.29294 1.25032 1.22303 0.91444 0.88952 0.97705 1.17556 0.88679 0.91225 1.03481 1.21096 0.99784 0.91334 0.97773 1.21358 0.90892 1.00599 0.98094 1.20145 0.93745 0.94328 1.02102 1.18317 0.86372 0.81077 0.80338 1.90739 1.35487 1.73999 1.42874 1.47981 1.25024 1.21916 1.36944 1.23062 0.89045 1.00861 0.92299 1.21148 0.91887 0.92641 0.90776 1.43925 1.20230 1.24746 1.42298 1.19075 1.39360 0.87983 0.92831 0.91791 1.25193 1.01499 0.96468 0.95821 1.70037 1.47089 1.22867 1.13887 0.86390 0.78741 0.83022 0.78705 1.20834 1.21620 1.20740 1.21301 0.91106 0.99155 0.87953 1.22260 0.89686 0.90614 1.00293 1.21075 0.99496 0.91410 0.97182 1.21072 0.90640 1.00421 0.98730 1.78256 0.96343 1.11785 1.26894 1.47994 1.04174 1.10111 1.57969 0.71342 0.88863 0.89767 0.88092 0.84133 0.84392 0.91543 0.90078 0.95617 0.89308 0.93412 0.95828 0.91445 0.89892 0.91721 0.84582 0.84719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.26 10.51 36.00 0.38 0.12 16 2 C 0.29 2.37 8.22 -155.73 -1.28 1.09 16 3 N -0.53 -6.33 10.81 -8.57 -0.09 -6.42 16 4 C 0.28 3.61 7.77 -156.59 -1.22 2.39 16 5 C -0.01 -0.09 5.88 -104.82 -0.62 -0.70 16 6 C -0.08 -1.01 9.67 -39.32 -0.38 -1.39 16 7 C -0.09 -1.22 7.37 -39.24 -0.29 -1.50 16 8 C -0.10 -1.53 5.06 -104.92 -0.53 -2.06 16 9 C 0.55 10.05 7.28 -12.39 -0.09 9.96 16 10 O -0.55 -11.44 16.37 5.30 0.09 -11.36 16 11 N -0.59 -10.82 2.94 -173.37 -0.51 -11.33 16 12 C 0.07 1.28 5.20 -3.36 -0.02 1.27 16 13 C 0.16 3.70 5.52 -3.37 -0.02 3.68 16 14 N -0.59 -14.42 2.93 -171.77 -0.50 -14.92 16 15 C -0.26 -7.00 9.51 -15.06 -0.14 -7.14 16 16 H 0.06 1.67 7.89 -52.49 -0.41 1.26 16 17 C 0.01 0.28 4.84 -17.43 -0.08 0.19 16 18 N -0.90 -25.45 11.67 55.49 0.65 -24.80 16 19 Si 0.90 21.06 29.59 -169.99 -5.03 16.03 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 C 0.13 2.79 6.67 -3.60 -0.02 2.77 16 24 C 0.10 1.76 6.60 -3.60 -0.02 1.74 16 25 C -0.07 -1.03 9.65 -39.24 -0.38 -1.41 16 26 C -0.09 -1.14 9.66 -39.32 -0.38 -1.52 16 27 N -0.30 -3.69 12.42 32.09 0.40 -3.29 16 28 N -0.48 -3.92 7.44 32.61 0.24 -3.68 16 29 H 0.44 1.78 8.96 -182.34 -1.63 0.15 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 32 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.14 1.60 7.82 -52.49 -0.41 1.19 16 34 H 0.14 1.69 6.81 -52.49 -0.36 1.34 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.30 4.76 -51.93 -0.25 1.06 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.09 2.21 6.44 -51.93 -0.33 1.87 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 1.36 7.94 -51.93 -0.41 0.95 16 42 H 0.08 1.50 6.99 -51.93 -0.36 1.14 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 45 H 0.13 1.55 7.82 -52.49 -0.41 1.14 16 LS Contribution 373.68 15.07 5.63 5.63 Total: -1.00 -34.66 373.68 -11.33 -45.98 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.10 Total: 0.66 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: -5.09 Total: 7.50 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: 0.18 Total: -64.44 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.66 -11.33 -45.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332423333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.649 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds