Wall clock time and date at job start Sat Apr 11 2020 06:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47407 * 2 1 4 4 H 1.09006 * 109.47034 * 54.99853 * 3 2 1 5 5 C 1.50695 * 109.47198 * 174.99948 * 3 2 1 6 6 C 1.38649 * 120.78969 * 99.53684 * 5 3 2 7 7 C 1.38207 * 119.16083 * 179.75499 * 6 5 3 8 8 N 1.31862 * 120.76423 * 0.53383 * 7 6 5 9 9 C 1.31867 * 121.72839 * 359.73828 * 8 7 6 10 10 C 1.38213 * 120.76337 * 359.97438 * 9 8 7 11 11 N 1.46496 * 109.47130 * 295.00266 * 3 2 1 12 12 C 1.46502 * 120.00048 * 311.40109 * 11 3 2 13 13 S 1.65603 * 120.00190 * 131.39900 * 11 3 2 14 14 O 1.42099 * 106.40333 * 203.53958 * 13 11 3 15 15 O 1.42097 * 106.39968 * 336.46116 * 13 11 3 16 16 N 1.65600 * 107.21811 * 89.99851 * 13 11 3 17 17 C 1.46501 * 119.99973 * 270.00374 * 16 13 11 18 18 C 1.53003 * 109.47335 * 94.99776 * 17 16 13 19 19 C 1.46498 * 120.00065 * 89.99902 * 16 13 11 20 20 C 1.50702 * 109.47215 * 95.00039 * 19 16 13 21 21 H 1.08004 * 119.99432 * 0.02562 * 20 19 16 22 22 C 1.37867 * 120.00223 * 179.97438 * 20 19 16 23 23 N 1.31518 * 120.00246 * 180.02562 * 22 20 19 24 24 Si 1.86807 * 120.00104 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47129 * 89.99611 * 24 22 20 26 26 H 1.48502 * 109.47067 * 209.99790 * 24 22 20 27 27 H 1.48500 * 109.46942 * 329.99950 * 24 22 20 28 28 H 1.09004 * 109.47171 * 300.00297 * 1 2 3 29 29 H 1.09005 * 109.47420 * 59.99358 * 1 2 3 30 30 H 1.08995 * 109.47538 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46520 * 240.00027 * 2 1 3 32 32 H 1.09001 * 109.46714 * 120.00078 * 2 1 3 33 33 H 1.07993 * 120.41854 * 0.02562 * 6 5 3 34 34 H 1.07998 * 119.61661 * 180.29070 * 7 6 5 35 35 H 1.08002 * 119.62249 * 180.02562 * 9 8 7 36 36 H 1.08002 * 120.41728 * 180.02562 * 10 9 8 37 37 H 1.08999 * 109.47381 * 96.32525 * 12 11 3 38 38 H 1.08996 * 109.46790 * 216.32776 * 12 11 3 39 39 H 1.08998 * 109.47042 * 336.32395 * 12 11 3 40 40 H 1.09001 * 109.47313 * 214.99409 * 17 16 13 41 41 H 1.09004 * 109.47188 * 334.99432 * 17 16 13 42 42 H 1.09004 * 109.47202 * 179.97438 * 18 17 16 43 43 H 1.08995 * 109.47040 * 300.00120 * 18 17 16 44 44 H 1.09005 * 109.46777 * 59.99899 * 18 17 16 45 45 H 1.09004 * 109.47309 * 215.00121 * 19 16 13 46 46 H 1.09003 * 109.47290 * 335.00103 * 19 16 13 47 47 H 0.97000 * 119.99979 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 6 4.3460 1.6082 -0.9937 7 6 5.7196 1.6095 -0.8407 8 7 6.2660 1.4469 0.3483 9 6 5.5326 1.2828 1.4319 10 6 4.1525 1.2763 1.3572 11 7 1.6525 2.0975 -1.2517 12 6 1.8967 1.4311 -2.5334 13 16 0.9383 3.5912 -1.2181 14 8 0.2044 3.7125 -2.4289 15 8 0.3457 3.7237 0.0666 16 7 2.1512 4.7163 -1.2918 17 6 2.7594 5.2195 -0.0576 18 6 4.0223 4.4140 0.2540 19 6 2.6161 5.2082 -2.5910 20 6 1.8972 6.4886 -2.9299 21 1 1.1674 6.8954 -2.2456 22 6 2.1720 7.1412 -4.1128 23 7 1.5450 8.2589 -4.4084 24 14 3.4349 6.4378 -5.2961 25 1 2.7627 5.5177 -6.2482 26 1 4.0788 7.5446 -6.0482 27 1 4.4673 5.6921 -4.5323 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9045 1.7376 -1.9707 34 1 6.3528 1.7414 -1.7055 35 1 6.0159 1.1529 2.3890 36 1 3.5573 1.1419 2.2484 37 1 0.9920 0.9130 -2.8517 38 1 2.1728 2.1735 -3.2821 39 1 2.7069 0.7109 -2.4198 40 1 3.0206 6.2703 -0.1835 41 1 2.0511 5.1172 0.7645 42 1 4.4751 4.7888 1.1720 43 1 3.7612 3.3633 0.3799 44 1 4.7306 4.5164 -0.5682 45 1 3.6891 5.3948 -2.5461 46 1 2.4090 4.4614 -3.3576 47 1 1.7386 8.7182 -5.2405 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337083615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:18 Heat of formation + Delta-G solvation = -20.392044 kcal Electronic energy + Delta-G solvation = -30585.179859 eV Core-core repulsion = 26702.827200 eV Total energy + Delta-G solvation = -3882.352659 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.67626 -37.72879 -36.82138 -36.19889 -35.29475 -32.93368 -32.65510 -32.22464 -31.17614 -30.22549 -27.86179 -27.14335 -25.41682 -23.53222 -23.01893 -22.76524 -21.60077 -20.80697 -18.66943 -17.64460 -17.27427 -16.87689 -16.73383 -16.33485 -15.91647 -15.66706 -14.98410 -14.62246 -14.41175 -14.21989 -14.17040 -13.86977 -13.60013 -13.40002 -12.97328 -12.86554 -12.72390 -12.57349 -12.49936 -12.09121 -12.00459 -11.95326 -11.76962 -11.64599 -11.49810 -11.29399 -11.18650 -11.11303 -11.03626 -10.95470 -10.51570 -10.43463 -10.28144 -9.66609 -9.58217 -9.33978 -9.22342 -9.04445 -8.61503 -8.14789 -6.10327 -4.09677 0.98673 1.04822 1.12212 3.21845 3.25751 3.28443 3.32686 3.70086 3.90940 4.28001 4.35453 4.37458 4.59448 4.67768 4.76500 4.89597 4.98913 5.03090 5.05487 5.16929 5.20528 5.33199 5.36798 5.46487 5.50318 5.55991 5.62659 5.65445 5.68183 5.73416 5.79880 5.82382 5.87486 5.94667 5.98136 6.13194 6.21790 6.25428 6.45169 6.51997 6.58428 6.59760 6.72979 7.07635 7.37836 7.55708 7.88482 8.46813 8.94566 9.48552 11.03307 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012345 B = 0.005304 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.571624 B = 5278.010226 C = 6254.489398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.184 3.816 4 H 0.115 0.885 5 C -0.044 4.044 6 C -0.165 4.165 7 C 0.101 3.899 8 N -0.487 5.487 9 C 0.099 3.901 10 C -0.170 4.170 11 N -1.008 6.008 12 C 0.084 3.916 13 S 2.777 3.223 14 O -0.956 6.956 15 O -0.989 6.989 16 N -0.982 5.982 17 C 0.119 3.881 18 C -0.187 4.187 19 C 0.230 3.770 20 C -0.531 4.531 21 H 0.077 0.923 22 C 0.074 3.926 23 N -0.894 5.894 24 Si 0.871 3.129 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.265 1.265 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.145 0.855 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.135 0.865 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.033 0.967 46 H 0.025 0.975 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.837 -18.656 10.250 22.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C 0.076 3.924 4 H 0.133 0.867 5 C -0.054 4.054 6 C -0.184 4.184 7 C -0.055 4.055 8 N -0.196 5.196 9 C -0.057 4.057 10 C -0.191 4.191 11 N -0.845 5.845 12 C -0.061 4.061 13 S 2.786 3.214 14 O -0.940 6.940 15 O -0.973 6.973 16 N -0.823 5.823 17 C -0.007 4.007 18 C -0.245 4.245 19 C 0.107 3.893 20 C -0.570 4.570 21 H 0.095 0.905 22 C -0.129 4.129 23 N -0.533 5.533 24 Si 0.697 3.303 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.189 1.189 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.163 0.837 34 H 0.170 0.830 35 H 0.170 0.830 36 H 0.152 0.848 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.051 0.949 46 H 0.043 0.957 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.780 -18.323 10.187 21.746 hybrid contribution 0.215 -0.139 -0.921 0.956 sum 5.995 -18.462 9.266 21.509 Atomic orbital electron populations 1.21792 0.94860 1.01773 1.02808 1.21772 0.96833 0.94242 1.02915 1.19894 0.89193 0.95773 0.87497 0.86695 1.20615 0.96508 0.94767 0.93492 1.22411 0.94803 1.00676 1.00538 1.22748 0.92790 0.94806 0.95160 1.67658 1.41115 1.11758 0.99098 1.22671 0.90599 0.95341 0.97137 1.21942 0.96430 1.02842 0.97849 1.58334 1.78901 1.36635 1.10648 1.21635 1.01808 0.98837 0.83835 1.02218 0.73857 0.72127 0.73211 1.93641 1.68477 1.85193 1.46640 1.93514 1.75134 1.86049 1.42641 1.57518 1.56590 1.55270 1.12920 1.21144 0.94206 0.99804 0.85552 1.22717 0.98990 1.01506 1.01311 1.19393 0.95942 0.95542 0.78435 1.21362 1.23921 1.06144 1.05576 0.90479 1.24863 0.95911 0.94673 0.97461 1.69895 1.41967 1.16896 1.24509 0.86946 0.82142 0.79312 0.81885 1.19801 1.20947 1.18926 0.92120 0.92343 0.92383 0.91021 0.90749 0.83724 0.83004 0.83013 0.84754 0.92138 0.90783 0.90461 0.89601 0.90522 0.92507 0.91766 0.92402 0.94930 0.95672 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.80 37.16 0.36 -1.12 16 2 C -0.12 -1.04 5.18 -26.73 -0.14 -1.18 16 3 C 0.18 2.03 2.23 -69.09 -0.15 1.87 16 4 H 0.12 1.37 6.80 -51.93 -0.35 1.01 16 5 C -0.04 -0.46 2.62 -104.32 -0.27 -0.73 16 6 C -0.16 -1.79 7.36 -39.44 -0.29 -2.08 16 7 C 0.10 1.12 11.18 -17.55 -0.20 0.92 16 8 N -0.49 -5.68 10.36 -13.25 -0.14 -5.82 16 9 C 0.10 0.97 11.18 -17.55 -0.20 0.77 16 10 C -0.17 -1.56 9.08 -39.44 -0.36 -1.92 16 11 N -1.01 -13.59 2.25 -115.86 -0.26 -13.85 16 12 C 0.08 0.96 7.38 59.85 0.44 1.40 16 13 S 2.78 52.53 6.04 -107.50 -0.65 51.88 16 14 O -0.96 -21.93 16.31 -57.17 -0.93 -22.86 16 15 O -0.99 -19.59 15.19 -57.17 -0.87 -20.46 16 16 N -0.98 -19.34 2.83 -115.66 -0.33 -19.66 16 17 C 0.12 2.04 6.40 -4.04 -0.03 2.02 16 18 C -0.19 -2.65 9.67 37.16 0.36 -2.29 16 19 C 0.23 5.24 4.17 -5.19 -0.02 5.22 16 20 C -0.53 -14.93 9.94 -34.44 -0.34 -15.27 16 21 H 0.08 2.40 8.06 -52.48 -0.42 1.98 16 22 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 23 N -0.89 -27.35 13.96 55.43 0.77 -26.58 16 24 Si 0.87 20.72 27.47 -169.99 -4.67 16.05 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.26 -5.80 6.54 56.52 0.37 -5.43 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.64 7.75 -51.93 -0.40 0.24 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.58 6.86 -51.93 -0.36 0.23 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.15 1.53 4.54 -52.49 -0.24 1.29 16 34 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 35 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.93 7.64 -51.93 -0.40 0.53 16 39 H 0.08 0.67 5.38 -51.93 -0.28 0.39 16 40 H 0.09 1.56 8.11 -51.93 -0.42 1.13 16 41 H 0.08 1.27 6.91 -51.93 -0.36 0.91 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.83 2.58 -51.93 -0.13 0.70 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.03 0.72 7.17 -51.93 -0.37 0.34 16 46 H 0.03 0.57 6.67 -51.93 -0.35 0.22 16 47 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 376.63 15.07 5.68 5.68 Total: -1.00 -34.69 376.63 -9.38 -44.07 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.05 Total: 1.92 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -0.93 Total: -10.36 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: 0.05 Total: -65.92 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -1.80 Total: -43.32 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal Atomic # 16 Polarization: 52.53 SS G_CDS: -0.65 Total: 51.88 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.69 -9.38 -44.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337083615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.674 kcal (2) G-P(sol) polarization free energy of solvation -34.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds