Wall clock time and date at job start Sat Apr 11 2020 06:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46819 * 2 1 4 4 C 1.53001 * 109.47064 * 175.00164 * 3 2 1 5 5 C 1.53004 * 109.47048 * 185.48367 * 4 3 2 6 6 N 1.46498 * 109.46902 * 294.99844 * 3 2 1 7 7 S 1.65598 * 120.00150 * 114.28225 * 6 3 2 8 8 O 1.42103 * 106.40147 * 310.31609 * 7 6 3 9 9 O 1.42097 * 106.40384 * 177.40293 * 7 6 3 10 10 C 1.76192 * 107.22227 * 63.85698 * 7 6 3 11 11 C 1.38891 * 120.33454 * 86.10670 * 10 7 6 12 12 C 1.38292 * 118.50665 * 180.02562 * 11 10 7 13 13 C 1.39143 * 119.09740 * 0.02562 * 12 11 10 14 14 N 1.39006 * 119.70602 * 179.97438 * 13 12 11 15 15 C 1.46492 * 119.99896 * 0.02562 * 14 13 12 16 16 C 1.53006 * 109.47101 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.47150 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99601 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00023 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99653 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99956 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47344 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46914 * 120.00671 * 21 19 17 24 24 H 1.48498 * 109.46868 * 240.00031 * 21 19 17 25 25 N 1.32394 * 120.58725 * 359.97438 * 13 12 11 26 26 C 1.31971 * 121.62490 * 359.97438 * 25 13 12 27 27 H 1.08991 * 109.46784 * 60.00187 * 1 2 3 28 28 H 1.09004 * 109.46640 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47131 * 300.00325 * 1 2 3 30 30 H 1.08996 * 109.47549 * 239.99869 * 2 1 3 31 31 H 1.08994 * 109.47062 * 119.99362 * 2 1 3 32 32 H 1.08998 * 109.47552 * 54.99644 * 3 2 1 33 33 H 1.08997 * 109.46799 * 305.48089 * 4 3 2 34 34 H 1.08995 * 109.47450 * 65.47793 * 4 3 2 35 35 H 1.09006 * 109.46752 * 182.34852 * 5 4 3 36 36 H 1.08996 * 109.46824 * 302.34486 * 5 4 3 37 37 H 1.08999 * 109.46892 * 62.35228 * 5 4 3 38 38 H 0.97002 * 120.00215 * 294.27832 * 6 3 2 39 39 H 1.07994 * 120.74239 * 0.02562 * 11 10 7 40 40 H 1.07998 * 120.45129 * 179.72316 * 12 11 10 41 41 H 0.96999 * 119.99613 * 179.97438 * 14 13 12 42 42 H 1.09000 * 109.47394 * 299.99917 * 15 14 13 43 43 H 1.09004 * 109.47549 * 59.99932 * 15 14 13 44 44 H 1.08995 * 109.47100 * 299.99894 * 16 15 14 45 45 H 1.08991 * 109.46888 * 59.99944 * 16 15 14 46 46 H 0.97008 * 120.00015 * 180.02562 * 20 19 17 47 47 H 1.08004 * 119.57313 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5648 1.4444 0.1257 5 6 4.0634 2.8844 0.2632 6 7 1.6524 2.0974 -1.2518 7 16 0.5799 3.3590 -1.2288 8 8 -0.5291 2.9287 -0.4514 9 8 0.4601 3.8084 -2.5715 10 6 1.3378 4.6717 -0.3305 11 6 2.1790 5.5691 -0.9756 12 6 2.7541 6.5847 -0.2339 13 6 2.4726 6.6723 1.1259 14 7 3.0443 7.6879 1.8837 15 6 3.9382 8.6601 1.2499 16 6 4.4257 9.6632 2.2974 17 6 5.3458 10.6630 1.6455 18 1 5.5609 10.5905 0.5896 19 6 5.9121 11.6709 2.3969 20 7 5.6496 11.7594 3.6825 21 14 7.0531 12.9097 1.5890 22 1 7.1847 12.5928 0.1443 23 1 6.4919 14.2756 1.7466 24 1 8.3891 12.8461 2.2341 25 7 1.6652 5.7971 1.7045 26 6 1.1017 4.8186 1.0214 27 1 -0.3632 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 1.6053 1.9816 0.8417 33 1 3.8574 0.8730 1.0065 34 1 4.0033 0.9914 -0.7634 35 1 5.1524 2.8888 0.3108 36 1 3.7350 3.4663 -0.5979 37 1 3.6581 3.3237 1.1747 38 1 2.0240 1.7921 -2.0942 39 1 2.3793 5.4757 -2.0327 40 1 3.4166 7.2972 -0.7027 41 1 2.8507 7.7531 2.8319 42 1 4.7935 8.1401 0.8186 43 1 3.4003 9.1894 0.4632 44 1 3.5702 10.1832 2.7283 45 1 4.9634 9.1343 3.0842 46 1 6.0477 12.4687 4.2111 47 1 0.4480 4.1232 1.5270 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343610518.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:47 Heat of formation + Delta-G solvation = -63.079968 kcal Electronic energy + Delta-G solvation = -27926.025825 eV Core-core repulsion = 24041.822079 eV Total energy + Delta-G solvation = -3884.203746 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.19599 -38.12320 -37.17205 -36.21511 -35.90172 -33.33198 -32.57885 -32.24196 -31.85790 -30.83070 -28.72477 -26.45010 -25.11629 -23.78838 -22.69286 -22.21296 -21.39669 -21.04317 -19.80424 -18.18552 -17.74619 -17.21499 -16.83959 -16.35650 -16.20096 -15.11384 -14.96758 -14.82705 -14.69618 -14.45604 -14.33909 -14.17106 -13.97215 -13.54998 -13.35426 -13.17783 -13.02435 -12.65825 -12.38532 -12.36837 -12.14706 -12.07659 -11.77862 -11.56522 -11.42882 -11.35074 -11.22434 -11.12745 -11.09082 -11.04066 -10.86434 -10.74049 -10.20801 -9.83909 -9.76947 -9.70529 -9.45520 -9.41854 -8.57479 -7.80623 -6.21987 -4.26667 0.35726 0.95898 1.32536 2.90266 3.19410 3.25531 3.29096 3.35162 3.59121 3.85301 4.26576 4.29067 4.30423 4.54828 4.66836 4.67515 4.78005 4.94835 4.99381 5.09947 5.15317 5.19607 5.23159 5.25719 5.47373 5.57719 5.62057 5.70166 5.73767 5.76712 5.79249 5.82839 5.87288 5.97507 5.97925 6.05222 6.10469 6.17722 6.41534 6.46911 6.73853 7.01350 7.36372 7.42052 7.67419 7.73996 8.06213 8.17499 8.78856 9.39178 10.89456 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.002258 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.123950 B =12397.747907 C =12652.537304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.133 4.133 3 C 0.154 3.846 4 C -0.131 4.131 5 C -0.156 4.156 6 N -1.112 6.112 7 S 2.705 3.295 8 O -0.960 6.960 9 O -0.969 6.969 10 C -0.807 4.807 11 C 0.061 3.939 12 C -0.255 4.255 13 C 0.450 3.550 14 N -0.696 5.696 15 C 0.120 3.880 16 C 0.013 3.987 17 C -0.526 4.526 18 H 0.060 0.940 19 C 0.060 3.940 20 N -0.890 5.890 21 Si 0.898 3.102 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 N -0.559 5.559 26 C 0.254 3.746 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.416 0.584 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.408 0.592 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.025 0.975 45 H 0.025 0.975 46 H 0.263 0.737 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.495 -23.446 -8.220 25.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.172 4.172 3 C 0.047 3.953 4 C -0.171 4.171 5 C -0.214 4.214 6 N -0.870 5.870 7 S 2.795 3.205 8 O -0.950 6.950 9 O -0.959 6.959 10 C -0.902 4.902 11 C 0.035 3.965 12 C -0.282 4.282 13 C 0.211 3.789 14 N -0.320 5.320 15 C -0.003 4.003 16 C -0.025 4.025 17 C -0.565 4.565 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.529 5.529 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 N -0.278 5.278 26 C 0.089 3.911 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.250 0.750 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.244 0.756 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.043 0.957 46 H 0.073 0.927 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.307 -22.915 -7.446 25.178 hybrid contribution 1.544 1.052 -0.750 2.013 sum -5.763 -21.863 -8.196 24.050 Atomic orbital electron populations 1.21797 0.94826 1.01252 1.03215 1.21913 0.97036 0.95677 1.02561 1.20887 0.95141 0.94050 0.85212 1.21901 0.94483 0.98049 1.02623 1.21847 1.01153 0.96108 1.02278 1.55659 1.66282 1.50310 1.14777 1.01428 0.73232 0.72578 0.73273 1.93578 1.48162 1.81058 1.72162 1.93570 1.85766 1.81354 1.35194 1.31071 1.24932 1.24928 1.09302 1.20830 0.87435 0.89245 0.99038 1.21499 1.08787 1.04129 0.93737 1.18842 0.85734 0.85813 0.88538 1.45509 1.47430 1.26986 1.12073 1.22003 0.90843 0.89183 0.98258 1.19315 0.96864 0.92730 0.93556 1.21001 1.28131 1.11772 0.95553 0.92159 1.25009 0.96614 0.97795 0.94841 1.69962 1.43912 1.33047 1.05940 0.86434 0.80425 0.80991 0.79570 1.19587 1.20839 1.20844 1.67358 1.14130 1.06752 1.39528 1.22092 0.89378 0.91063 0.88520 0.92416 0.93034 0.91865 0.91484 0.90873 0.89338 0.90790 0.91301 0.92565 0.92327 0.92697 0.74993 0.84088 0.84075 0.75620 0.92216 0.92206 0.95672 0.95689 0.92705 0.81797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.05 37.16 0.34 -0.85 16 2 C -0.13 -0.80 5.61 -26.73 -0.15 -0.95 16 3 C 0.15 1.05 2.25 -67.93 -0.15 0.90 16 4 C -0.13 -0.83 5.61 -26.73 -0.15 -0.98 16 5 C -0.16 -1.33 9.53 37.16 0.35 -0.97 16 6 N -1.11 -8.13 4.27 -4.89 -0.02 -8.15 16 7 S 2.70 28.92 5.59 -107.50 -0.60 28.32 16 8 O -0.96 -11.98 15.26 -57.17 -0.87 -12.85 16 9 O -0.97 -13.05 17.46 -57.17 -1.00 -14.04 16 10 C -0.81 -9.49 5.03 -39.42 -0.20 -9.69 16 11 C 0.06 0.73 8.70 -39.32 -0.34 0.39 16 12 C -0.26 -3.54 9.33 -39.23 -0.37 -3.90 16 13 C 0.45 6.99 7.65 -155.02 -1.19 5.80 16 14 N -0.70 -11.52 5.73 -60.42 -0.35 -11.87 16 15 C 0.12 2.19 4.83 -4.04 -0.02 2.17 16 16 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 17 C -0.53 -13.70 9.11 -34.44 -0.31 -14.02 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -25.30 13.29 55.43 0.74 -24.57 16 21 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 N -0.56 -8.37 10.39 -12.44 -0.13 -8.50 16 26 C 0.25 3.21 10.62 -17.57 -0.19 3.03 16 27 H 0.06 0.51 6.87 -51.93 -0.36 0.15 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.64 7.74 -51.93 -0.40 0.23 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.51 6.07 -51.93 -0.32 0.19 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.42 2.22 8.96 -34.47 -0.31 1.91 16 39 H 0.14 1.42 7.79 -52.49 -0.41 1.01 16 40 H 0.14 1.85 6.71 -52.49 -0.35 1.50 16 41 H 0.41 6.68 8.60 -40.82 -0.35 6.33 16 42 H 0.06 1.06 7.92 -51.93 -0.41 0.65 16 43 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 44 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 47 H 0.16 1.71 7.53 -52.48 -0.40 1.32 16 LS Contribution 394.30 15.07 5.94 5.94 Total: -1.00 -31.71 394.30 -11.41 -43.12 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -7.48 Total: 4.51 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -2.61 Total: -17.39 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.24 Total: -53.09 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -1.87 Total: -26.89 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 28.92 SS G_CDS: -0.60 Total: 28.32 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.71 -11.41 -43.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343610518.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.963 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds