Wall clock time and date at job start Sat Apr 11 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81395 * 103.00013 * 2 1 4 4 C 1.50697 * 109.47229 * 180.02562 * 3 2 1 5 5 N 1.29951 * 126.29121 * 89.97229 * 4 3 2 6 6 O 1.21293 * 110.25189 * 180.02562 * 5 4 3 7 7 C 1.33641 * 109.81516 * 0.02562 * 6 5 4 8 8 C 1.50701 * 126.55500 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47212 * 270.02472 * 8 7 6 10 10 C 1.50697 * 109.47466 * 179.97438 * 9 8 7 11 11 O 1.21288 * 120.00038 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00369 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00115 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46784 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47245 * 299.99716 * 14 13 12 16 16 C 1.53002 * 109.46948 * 59.99959 * 14 13 12 17 17 C 1.53000 * 109.46632 * 179.97438 * 14 13 12 18 18 C 1.50703 * 109.46912 * 180.02562 * 17 14 13 19 19 H 1.07996 * 119.99751 * 0.02562 * 18 17 14 20 20 C 1.37877 * 120.00001 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99659 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00163 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46926 * 59.99478 * 22 20 18 24 24 H 1.48495 * 109.47050 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46966 * 300.00066 * 22 20 18 26 26 N 1.31130 * 106.89473 * 0.22398 * 7 6 5 27 27 H 1.09001 * 109.46648 * 60.00433 * 1 2 3 28 28 H 1.09004 * 109.46952 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47054 * 300.00095 * 1 2 3 30 30 H 1.08994 * 109.47499 * 59.99777 * 3 2 1 31 31 H 1.09003 * 109.46775 * 299.99720 * 3 2 1 32 32 H 1.09002 * 109.47060 * 30.02527 * 8 7 6 33 33 H 1.09001 * 109.47380 * 150.02615 * 8 7 6 34 34 H 1.09002 * 109.47153 * 299.99998 * 9 8 7 35 35 H 1.08998 * 109.47533 * 59.99628 * 9 8 7 36 36 H 0.97003 * 119.99640 * 0.02562 * 12 10 9 37 37 H 1.09002 * 109.46801 * 299.99526 * 13 12 10 38 38 H 1.08992 * 109.46823 * 59.99976 * 13 12 10 39 39 H 1.09004 * 109.47108 * 60.00288 * 15 14 13 40 40 H 1.09000 * 109.46870 * 180.02562 * 15 14 13 41 41 H 1.09001 * 109.47367 * 300.00590 * 15 14 13 42 42 H 1.09002 * 109.47070 * 59.99735 * 16 14 13 43 43 H 1.09000 * 109.46986 * 179.97438 * 16 14 13 44 44 H 1.08993 * 109.47662 * 299.99787 * 16 14 13 45 45 H 1.09002 * 109.47398 * 300.00272 * 17 14 13 46 46 H 1.09001 * 109.46741 * 60.00169 * 17 14 13 47 47 H 0.97009 * 119.99646 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9373 -0.0006 5 7 4.4833 2.0236 -1.0484 6 8 5.6418 2.1546 -0.7138 7 6 5.7299 2.1641 0.6197 8 6 6.9893 2.3059 1.4351 9 6 7.5775 0.9205 1.7100 10 6 8.8372 1.0622 2.5248 11 8 9.2261 2.1629 2.8537 12 7 9.5318 -0.0342 2.8881 13 6 10.7562 0.1036 3.6807 14 6 11.3444 -1.2819 3.9555 15 6 10.3277 -2.1232 4.7297 16 6 11.6706 -1.9698 2.6284 17 6 12.6234 -1.1379 4.7827 18 6 13.2031 -2.5025 5.0529 19 1 12.7090 -3.3841 4.6723 20 6 14.3644 -2.6254 5.7860 21 7 14.9663 -1.5516 6.2490 22 14 15.0826 -4.3168 6.1215 23 1 15.3991 -4.9845 4.8334 24 1 16.3240 -4.1770 6.9243 25 1 14.0959 -5.1334 6.8729 26 7 4.5115 2.0211 1.0831 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8032 2.2371 0.8899 31 1 1.8032 2.2370 -0.8900 32 1 7.7137 2.9052 0.8835 33 1 6.7569 2.7960 2.3805 34 1 6.8531 0.3211 2.2616 35 1 7.8099 0.4302 0.7647 36 1 9.2210 -0.9145 2.6247 37 1 11.4803 0.7033 3.1293 38 1 10.5236 0.5933 4.6263 39 1 9.4167 -2.2257 4.1400 40 1 10.7470 -3.1101 4.9258 41 1 10.0952 -1.6331 5.6751 42 1 12.3949 -1.3704 2.0768 43 1 12.0900 -2.9566 2.8241 44 1 10.7597 -2.0723 2.0386 45 1 13.3476 -0.5386 4.2309 46 1 12.3913 -0.6476 5.7282 47 1 15.7832 -1.6381 6.7652 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345876921.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:02 Heat of formation + Delta-G solvation = 7.367590 kcal Electronic energy + Delta-G solvation = -26338.659021 eV Core-core repulsion = 22457.510111 eV Total energy + Delta-G solvation = -3881.148910 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.02657 -39.79325 -37.27083 -36.56298 -34.98945 -33.66851 -32.23679 -31.81957 -30.09926 -29.19271 -27.39766 -26.83783 -26.53864 -25.21936 -23.91133 -22.79640 -21.72068 -20.26988 -18.69690 -18.24690 -18.00376 -16.98910 -16.75338 -16.37024 -15.93607 -15.48648 -15.36670 -14.96629 -14.54583 -14.53667 -14.46528 -14.22267 -13.66142 -13.41196 -13.34727 -13.22132 -13.08667 -12.78871 -12.77818 -12.66544 -12.14554 -12.06765 -11.86120 -11.56942 -11.42979 -11.17437 -11.01964 -10.88571 -10.77391 -10.64977 -10.43137 -10.28744 -10.25107 -9.90168 -9.88817 -9.19340 -8.95419 -8.80236 -8.36887 -8.26410 -6.01110 -4.02584 0.47274 0.96546 1.83141 2.10614 2.36523 2.68490 3.01367 3.31357 3.34745 3.36970 3.38798 3.53205 4.27620 4.41824 4.44237 4.52380 4.56723 4.59047 4.66693 4.76710 4.92796 5.13353 5.14992 5.26150 5.34235 5.35818 5.48138 5.56910 5.58881 5.60131 5.72114 6.13939 6.18951 6.24598 6.35979 6.51018 6.60584 6.71731 7.03588 7.05163 7.09877 7.61357 7.64586 7.72613 7.74201 7.97227 8.29934 8.39389 9.01927 9.60625 11.10189 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020391 B = 0.001661 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.797699 B =16857.255365 C =17738.918955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.225 6.225 3 C -0.001 4.001 4 C 0.179 3.821 5 N -0.368 5.368 6 O 0.087 5.913 7 C 0.193 3.807 8 C -0.012 4.012 9 C -0.141 4.141 10 C 0.512 3.488 11 O -0.545 6.545 12 N -0.719 5.719 13 C 0.128 3.872 14 C -0.073 4.073 15 C -0.128 4.128 16 C -0.127 4.127 17 C 0.036 3.964 18 C -0.513 4.513 19 H 0.059 0.941 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.889 3.111 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.278 1.278 26 N -0.468 5.468 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.400 0.600 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.029 0.971 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.067 0.933 44 H 0.029 0.971 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.793 5.900 -13.683 30.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.002 6.002 3 C -0.150 4.150 4 C -0.095 4.095 5 N -0.075 5.075 6 O 0.025 5.975 7 C -0.028 4.028 8 C -0.051 4.051 9 C -0.182 4.182 10 C 0.297 3.703 11 O -0.423 6.423 12 N -0.370 5.370 13 C 0.005 3.995 14 C -0.074 4.074 15 C -0.185 4.185 16 C -0.185 4.185 17 C -0.001 4.001 18 C -0.551 4.551 19 H 0.077 0.923 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.717 3.283 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 N -0.202 5.202 27 H 0.099 0.901 28 H 0.126 0.874 29 H 0.100 0.900 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.140 0.860 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.235 0.765 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.048 0.952 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -26.329 5.815 -13.839 30.308 hybrid contribution -0.394 -0.341 0.170 0.548 sum -26.723 5.474 -13.670 30.511 Atomic orbital electron populations 1.23470 0.93404 1.07144 1.05322 1.87332 1.07720 1.07047 1.98065 1.21425 0.88070 0.97892 1.07588 1.24682 0.98228 1.02307 0.84238 1.74669 0.89775 1.19517 1.23496 1.85331 1.22500 1.64607 1.25058 1.28910 0.96954 0.94989 0.81913 1.20014 0.87270 0.98740 0.99121 1.21640 0.96744 0.97558 1.02259 1.20221 0.84839 0.84864 0.80361 1.90729 1.69864 1.25743 1.55964 1.46198 1.27043 1.08842 1.54895 1.21661 0.84323 0.98812 0.94714 1.20918 0.98239 0.91603 0.96627 1.21767 0.96365 1.01400 0.98952 1.21766 0.99027 1.01983 0.95694 1.19085 0.89422 0.97434 0.94160 1.21144 1.08195 0.92590 1.33178 0.92315 1.25011 0.97105 0.96345 0.96010 1.69957 1.18882 1.28040 1.36450 0.86705 0.78506 0.84775 0.78272 1.20339 1.21399 1.20338 1.71920 0.99900 1.19595 1.28786 0.90130 0.87436 0.89976 0.86689 0.87255 0.86793 0.86045 0.87900 0.88090 0.76495 0.91653 0.91673 0.95215 0.91422 0.93333 0.93333 0.91423 0.95226 0.96332 0.96333 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.50 10.76 101.05 1.09 0.59 16 2 S -0.23 -1.82 22.36 -107.50 -2.40 -4.22 16 3 C 0.00 -0.01 6.57 36.00 0.24 0.23 16 4 C 0.18 1.83 7.48 -156.37 -1.17 0.66 16 5 N -0.37 -4.10 12.16 30.90 0.38 -3.72 16 6 O 0.09 0.89 11.31 18.11 0.20 1.09 16 7 C 0.19 1.81 7.77 -13.06 -0.10 1.70 16 8 C -0.01 -0.10 5.13 -27.88 -0.14 -0.24 16 9 C -0.14 -1.15 5.68 -27.89 -0.16 -1.31 16 10 C 0.51 6.32 7.83 -10.99 -0.09 6.23 16 11 O -0.54 -8.75 15.98 5.55 0.09 -8.66 16 12 N -0.72 -9.19 4.96 -60.29 -0.30 -9.49 16 13 C 0.13 2.10 4.56 -4.04 -0.02 2.08 16 14 C -0.07 -1.33 0.54 -154.51 -0.08 -1.41 16 15 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 16 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 17 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 18 C -0.51 -13.38 7.65 -34.44 -0.26 -13.64 16 19 H 0.06 1.47 5.68 -52.49 -0.30 1.17 16 20 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 21 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 22 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 N -0.47 -5.02 11.55 -9.87 -0.11 -5.14 16 27 H 0.08 0.24 8.14 -51.92 -0.42 -0.19 16 28 H 0.11 0.36 8.14 -51.92 -0.42 -0.07 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.11 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.11 0.82 8.10 -51.93 -0.42 0.40 16 33 H 0.12 1.01 8.10 -51.93 -0.42 0.59 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.40 4.26 6.16 -40.82 -0.25 4.01 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 40 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 1.24 6.61 -51.93 -0.34 0.89 16 44 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 401.17 15.07 6.05 6.05 Total: -1.00 -32.51 401.17 -8.12 -40.63 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.42 Total: -0.58 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -0.31 Total: -6.57 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.70 Total: -43.69 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.29 Total: -7.57 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -1.82 SS G_CDS: -2.40 Total: -4.22 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.51 -8.12 -40.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345876921.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.995 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds