Wall clock time and date at job start Sat Apr 11 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81395 * 103.00013 * 2 1 4 4 C 1.50697 * 109.47229 * 180.02562 * 3 2 1 5 5 N 1.29951 * 126.29121 * 89.97229 * 4 3 2 6 6 O 1.21293 * 110.25189 * 180.02562 * 5 4 3 7 7 C 1.33641 * 109.81516 * 0.02562 * 6 5 4 8 8 C 1.50701 * 126.55500 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47212 * 270.02472 * 8 7 6 10 10 C 1.50697 * 109.47466 * 179.97438 * 9 8 7 11 11 O 1.21288 * 120.00038 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00369 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00115 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46784 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47245 * 299.99716 * 14 13 12 16 16 C 1.53002 * 109.46948 * 59.99959 * 14 13 12 17 17 C 1.53000 * 109.46632 * 179.97438 * 14 13 12 18 18 C 1.50703 * 109.46912 * 180.02562 * 17 14 13 19 19 H 1.07996 * 119.99751 * 0.02562 * 18 17 14 20 20 C 1.37877 * 120.00001 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99659 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00163 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46926 * 59.99478 * 22 20 18 24 24 H 1.48495 * 109.47050 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46966 * 300.00066 * 22 20 18 26 26 N 1.31130 * 106.89473 * 0.22398 * 7 6 5 27 27 H 1.09001 * 109.46648 * 60.00433 * 1 2 3 28 28 H 1.09004 * 109.46952 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47054 * 300.00095 * 1 2 3 30 30 H 1.08994 * 109.47499 * 59.99777 * 3 2 1 31 31 H 1.09003 * 109.46775 * 299.99720 * 3 2 1 32 32 H 1.09002 * 109.47060 * 30.02527 * 8 7 6 33 33 H 1.09001 * 109.47380 * 150.02615 * 8 7 6 34 34 H 1.09002 * 109.47153 * 299.99998 * 9 8 7 35 35 H 1.08998 * 109.47533 * 59.99628 * 9 8 7 36 36 H 0.97003 * 119.99640 * 0.02562 * 12 10 9 37 37 H 1.09002 * 109.46801 * 299.99526 * 13 12 10 38 38 H 1.08992 * 109.46823 * 59.99976 * 13 12 10 39 39 H 1.09004 * 109.47108 * 60.00288 * 15 14 13 40 40 H 1.09000 * 109.46870 * 180.02562 * 15 14 13 41 41 H 1.09001 * 109.47367 * 300.00590 * 15 14 13 42 42 H 1.09002 * 109.47070 * 59.99735 * 16 14 13 43 43 H 1.09000 * 109.46986 * 179.97438 * 16 14 13 44 44 H 1.08993 * 109.47662 * 299.99787 * 16 14 13 45 45 H 1.09002 * 109.47398 * 300.00272 * 17 14 13 46 46 H 1.09001 * 109.46741 * 60.00169 * 17 14 13 47 47 H 0.97009 * 119.99646 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9373 -0.0006 5 7 4.4833 2.0236 -1.0484 6 8 5.6418 2.1546 -0.7138 7 6 5.7299 2.1641 0.6197 8 6 6.9893 2.3059 1.4351 9 6 7.5775 0.9205 1.7100 10 6 8.8372 1.0622 2.5248 11 8 9.2261 2.1629 2.8537 12 7 9.5318 -0.0342 2.8881 13 6 10.7562 0.1036 3.6807 14 6 11.3444 -1.2819 3.9555 15 6 10.3277 -2.1232 4.7297 16 6 11.6706 -1.9698 2.6284 17 6 12.6234 -1.1379 4.7827 18 6 13.2031 -2.5025 5.0529 19 1 12.7090 -3.3841 4.6723 20 6 14.3644 -2.6254 5.7860 21 7 14.9663 -1.5516 6.2490 22 14 15.0826 -4.3168 6.1215 23 1 15.3991 -4.9845 4.8334 24 1 16.3240 -4.1770 6.9243 25 1 14.0959 -5.1334 6.8729 26 7 4.5115 2.0211 1.0831 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8032 2.2371 0.8899 31 1 1.8032 2.2370 -0.8900 32 1 7.7137 2.9052 0.8835 33 1 6.7569 2.7960 2.3805 34 1 6.8531 0.3211 2.2616 35 1 7.8099 0.4302 0.7647 36 1 9.2210 -0.9145 2.6247 37 1 11.4803 0.7033 3.1293 38 1 10.5236 0.5933 4.6263 39 1 9.4167 -2.2257 4.1400 40 1 10.7470 -3.1101 4.9258 41 1 10.0952 -1.6331 5.6751 42 1 12.3949 -1.3704 2.0768 43 1 12.0900 -2.9566 2.8241 44 1 10.7597 -2.0723 2.0386 45 1 13.3476 -0.5386 4.2309 46 1 12.3913 -0.6476 5.7282 47 1 15.7832 -1.6381 6.7652 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345876921.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:01 Heat of formation + Delta-G solvation = -14.277866 kcal Electronic energy + Delta-G solvation = -26339.597638 eV Core-core repulsion = 22457.510111 eV Total energy + Delta-G solvation = -3882.087528 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.77537 -40.89851 -38.69257 -37.30421 -35.75330 -35.19557 -33.91385 -32.66047 -30.66273 -29.57838 -29.14595 -28.10548 -27.92146 -26.34209 -24.86261 -24.37274 -22.48742 -21.31962 -19.85678 -19.30851 -18.75228 -18.34110 -17.99013 -17.35190 -16.83516 -16.75477 -16.41459 -16.07309 -15.72701 -15.41421 -15.07397 -14.96036 -14.73792 -14.66168 -14.44325 -14.16018 -13.90350 -13.86246 -13.71892 -13.54543 -13.52180 -13.37301 -12.81379 -12.73817 -12.54913 -12.53312 -12.29285 -12.26174 -12.19419 -12.13546 -11.97620 -11.49374 -11.36356 -11.15202 -10.91496 -10.85934 -10.70277 -10.48533 -9.99664 -8.83151 -8.12066 -6.19608 -0.18019 0.34022 1.31118 1.43938 1.45606 1.52535 1.52846 1.63795 1.69753 2.26323 2.44264 2.49575 2.83418 3.22347 3.58597 3.75544 3.96214 3.97912 4.05411 4.11647 4.15040 4.26768 4.27657 4.33704 4.34276 4.49825 4.60830 4.69293 4.73208 4.78144 4.85872 4.88747 4.90482 4.96711 5.01010 5.15736 5.16459 5.44752 5.51135 5.54324 5.58071 5.61436 5.84254 5.92640 6.32964 6.63367 6.95710 6.99891 7.31262 7.48043 8.99975 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020391 B = 0.001661 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.797699 B =16857.255365 C =17738.918955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.288 6.288 3 C 0.007 3.993 4 C 0.175 3.825 5 N -0.388 5.388 6 O 0.083 5.917 7 C 0.203 3.797 8 C -0.008 4.008 9 C -0.127 4.127 10 C 0.514 3.486 11 O -0.584 6.584 12 N -0.710 5.710 13 C 0.142 3.858 14 C -0.066 4.066 15 C -0.122 4.122 16 C -0.122 4.122 17 C 0.040 3.960 18 C -0.515 4.515 19 H 0.072 0.928 20 C -0.005 4.005 21 N -0.937 5.937 22 Si 0.957 3.043 23 H -0.267 1.267 24 H -0.292 1.292 25 H -0.267 1.267 26 N -0.487 5.487 27 H 0.094 0.906 28 H 0.115 0.885 29 H 0.094 0.906 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.127 0.873 36 H 0.414 0.586 37 H 0.048 0.952 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.052 0.948 44 H 0.072 0.928 45 H -0.014 1.014 46 H -0.014 1.014 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.344 4.437 -15.051 33.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 S -0.065 6.065 3 C -0.141 4.141 4 C -0.098 4.098 5 N -0.096 5.096 6 O 0.023 5.977 7 C -0.018 4.018 8 C -0.047 4.047 9 C -0.168 4.168 10 C 0.302 3.698 11 O -0.465 6.465 12 N -0.363 5.363 13 C 0.017 3.983 14 C -0.067 4.067 15 C -0.180 4.180 16 C -0.179 4.179 17 C 0.002 3.998 18 C -0.553 4.553 19 H 0.090 0.910 20 C -0.202 4.202 21 N -0.579 5.579 22 Si 0.783 3.217 23 H -0.192 1.192 24 H -0.218 1.218 25 H -0.192 1.192 26 N -0.221 5.221 27 H 0.113 0.887 28 H 0.133 0.867 29 H 0.113 0.887 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.145 0.855 36 H 0.252 0.748 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.005 0.995 46 H 0.004 0.996 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -28.908 4.321 -15.230 32.959 hybrid contribution 0.344 0.179 0.595 0.710 sum -28.564 4.500 -14.635 32.409 Atomic orbital electron populations 1.23529 0.89392 1.08056 1.06645 1.87492 1.12224 1.08512 1.98257 1.21525 0.86483 0.97103 1.09015 1.25185 0.99409 1.01382 0.83847 1.74659 0.90153 1.20636 1.24147 1.85308 1.22317 1.64792 1.25330 1.29048 0.96981 0.94036 0.81702 1.20023 0.86887 0.98889 0.98917 1.21585 0.94460 0.98013 1.02737 1.20882 0.85467 0.83803 0.79696 1.90725 1.71051 1.27298 1.57415 1.45984 1.25795 1.10014 1.54457 1.21190 0.85599 0.97176 0.94297 1.20718 0.95957 0.93174 0.96819 1.21703 0.97464 0.99819 0.98987 1.21701 1.00789 1.00473 0.94984 1.18972 0.91739 0.95839 0.93250 1.21583 1.07907 0.93755 1.32035 0.91014 1.25934 0.97930 1.00130 0.96192 1.70116 1.19470 1.30473 1.37800 0.85617 0.77556 0.80148 0.78414 1.19209 1.21769 1.19236 1.71935 1.00491 1.20419 1.29270 0.88733 0.86666 0.88721 0.85313 0.85717 0.85974 0.86356 0.86320 0.85503 0.74771 0.93348 0.93513 0.90953 0.92841 0.94461 0.94367 0.92868 0.90905 0.99529 0.99593 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.76 113.37 1.22 0.60 16 2 S -0.29 -4.27 22.36 -56.49 -1.26 -5.54 16 3 C 0.01 0.10 6.57 71.24 0.47 0.56 16 4 C 0.17 3.35 7.48 138.46 1.04 4.39 16 5 N -0.39 -8.19 12.16 -60.33 -0.73 -8.92 16 6 O 0.08 1.57 11.31 74.87 0.85 2.42 16 7 C 0.20 3.45 7.77 88.38 0.69 4.14 16 8 C -0.01 -0.11 5.13 29.85 0.15 0.04 16 9 C -0.13 -1.70 5.68 29.85 0.17 -1.53 16 10 C 0.51 11.69 7.83 87.66 0.69 12.37 16 11 O -0.58 -18.41 15.98 -3.05 -0.05 -18.46 16 12 N -0.71 -16.59 4.96 -463.05 -2.30 -18.88 16 13 C 0.14 4.66 4.56 86.38 0.39 5.06 16 14 C -0.07 -2.38 0.54 -52.18 -0.03 -2.41 16 15 C -0.12 -3.92 8.05 71.98 0.58 -3.34 16 16 C -0.12 -3.88 8.05 71.98 0.58 -3.30 16 17 C 0.04 1.97 4.04 29.85 0.12 2.09 16 18 C -0.51 -27.21 7.65 25.60 0.20 -27.01 16 19 H 0.07 3.54 5.68 -2.91 -0.02 3.52 16 20 C 0.00 -0.28 5.46 84.65 0.46 0.19 16 21 N -0.94 -56.55 13.29 21.45 0.28 -56.27 16 22 Si 0.96 43.24 29.54 68.60 2.03 45.27 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 26 N -0.49 -9.73 11.55 -303.20 -3.50 -13.23 16 27 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.12 1.55 8.10 -2.39 -0.02 1.53 16 33 H 0.12 1.80 8.10 -2.39 -0.02 1.78 16 34 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.41 7.20 6.16 -92.71 -0.57 6.63 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.07 1.69 6.86 -2.38 -0.02 1.67 16 40 H 0.05 1.87 6.62 -2.39 -0.02 1.85 16 41 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.05 1.85 6.61 -2.39 -0.02 1.83 16 44 H 0.07 1.67 6.86 -2.39 -0.02 1.66 16 45 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 46 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 47 H 0.26 14.90 8.31 -92.70 -0.77 14.13 16 Total: -1.00 -73.62 401.17 2.44 -71.18 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.41 Total: 10.58 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 6.72 Total: -8.15 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -6.25 Total: -97.30 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: 0.80 Total: -16.04 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -4.27 SS G_CDS: -1.26 Total: -5.54 kcal Total: -73.62 2.44 -71.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345876921.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.904 kcal (2) G-P(sol) polarization free energy of solvation -73.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds