Wall clock time and date at job start Sat Apr 11 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47109 * 2 1 4 4 C 1.50698 * 109.46942 * 120.00143 * 2 1 3 5 5 N 1.31131 * 126.54683 * 120.00064 * 4 2 1 6 6 C 1.34499 * 105.61251 * 180.02562 * 5 4 2 7 7 C 1.50696 * 126.28793 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.54683 * 345.10582 * 7 6 5 9 9 C 1.53103 * 109.50718 * 105.21501 * 7 6 5 10 10 O 1.43017 * 109.25820 * 176.77995 * 9 7 6 11 11 C 1.43010 * 113.74103 * 301.33076 * 10 9 7 12 12 C 1.53096 * 109.25909 * 58.67161 * 11 10 9 13 13 N 1.47016 * 109.50511 * 224.99615 * 7 6 5 14 14 C 1.46894 * 111.00267 * 57.67462 * 13 7 6 15 15 C 1.52997 * 109.47515 * 189.68043 * 14 13 7 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 13 17 17 S 1.81005 * 109.46857 * 180.02562 * 16 15 14 18 18 C 1.76197 * 99.99772 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00667 * 359.97438 * 18 17 16 20 20 C 1.38806 * 119.99927 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00060 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00053 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47203 * 90.00024 * 22 20 18 24 24 H 1.48500 * 109.47233 * 209.99813 * 22 20 18 25 25 H 1.48506 * 109.47313 * 329.99924 * 22 20 18 26 26 N 1.29951 * 107.42275 * 0.23826 * 6 5 4 27 27 O 1.21297 * 110.24854 * 359.58194 * 26 6 5 28 28 H 1.09000 * 109.46945 * 300.00061 * 1 2 3 29 29 H 1.09006 * 109.47084 * 59.99865 * 1 2 3 30 30 H 1.08998 * 109.47385 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46945 * 239.99939 * 2 1 3 32 32 H 1.09008 * 109.46608 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47267 * 299.99947 * 3 2 1 34 34 H 1.09000 * 109.47267 * 60.00136 * 3 2 1 35 35 H 1.09005 * 109.50485 * 56.85084 * 9 7 6 36 36 H 1.08996 * 109.54200 * 296.74190 * 9 7 6 37 37 H 1.09004 * 109.51108 * 298.73571 * 11 10 9 38 38 H 1.09001 * 109.50677 * 178.60133 * 11 10 9 39 39 H 1.09002 * 109.50791 * 183.22113 * 12 11 10 40 40 H 1.09003 * 109.54534 * 63.10390 * 12 11 10 41 41 H 1.09002 * 109.47104 * 69.67775 * 14 13 7 42 42 H 1.08998 * 109.46828 * 309.68608 * 14 13 7 43 43 H 1.09002 * 109.47153 * 59.99762 * 15 14 13 44 44 H 1.09001 * 109.46832 * 299.99953 * 15 14 13 45 45 H 1.09001 * 109.47194 * 299.99650 * 16 15 14 46 46 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 47 47 H 0.97001 * 120.00515 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 2.7892 -1.7809 1.2598 6 6 2.9809 -2.0530 2.5629 7 6 3.7871 -3.1947 3.1264 8 1 3.9811 -3.9262 2.3420 9 6 5.1162 -2.6629 3.6694 10 8 5.8442 -3.7375 4.2699 11 6 5.1441 -4.3813 5.3378 12 6 3.8153 -4.9305 4.8118 13 7 3.0378 -3.8328 4.2185 14 6 1.7285 -4.3077 3.7514 15 6 0.8859 -4.7431 4.9518 16 6 -0.4776 -5.2382 4.4651 17 16 -1.4747 -5.7527 5.8855 18 6 -2.9456 -6.2602 5.0588 19 1 -3.0112 -6.1929 3.9829 20 6 -4.0204 -6.7464 5.7904 21 7 -3.9405 -6.8289 7.1016 22 14 -5.5801 -7.2838 4.9141 23 1 -5.4826 -8.7249 4.5691 24 1 -6.7483 -7.0660 5.8046 25 1 -5.7493 -6.4877 3.6719 26 7 2.3384 -1.1540 3.2468 27 8 1.7911 -0.3703 2.5001 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 4.9223 -1.8927 4.4160 36 1 5.7003 -2.2391 2.8525 37 1 4.9509 -3.6611 6.1329 38 1 5.7480 -5.2009 5.7271 39 1 3.2526 -5.3718 5.6345 40 1 4.0090 -5.6902 4.0544 41 1 1.8678 -5.1542 3.0790 42 1 1.2182 -3.5032 3.2217 43 1 0.7466 -3.8966 5.6242 44 1 1.3963 -5.5476 5.4814 45 1 -0.9882 -4.4341 3.9354 46 1 -0.3379 -6.0848 3.7930 47 1 -4.6916 -7.1684 7.6130 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355203155.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:09 Heat of formation + Delta-G solvation = 14.478460 kcal Electronic energy + Delta-G solvation = -27742.170821 eV Core-core repulsion = 23861.330261 eV Total energy + Delta-G solvation = -3880.840560 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.80120 -40.04001 -36.76708 -36.64309 -35.71623 -33.04651 -32.43511 -32.08706 -30.79237 -28.15374 -27.69766 -25.67326 -25.46155 -24.59921 -24.36527 -23.25079 -21.61306 -20.88336 -19.84634 -18.29349 -17.67332 -17.45862 -16.70589 -16.45337 -16.26529 -15.45827 -15.36945 -15.11568 -14.81506 -14.70397 -14.55611 -14.25005 -13.79737 -13.73014 -13.11279 -12.92099 -12.82378 -12.70469 -12.59063 -12.20152 -12.03506 -11.97979 -11.83301 -11.67514 -11.59482 -11.54271 -11.29830 -11.17459 -11.07511 -10.96807 -10.79935 -10.65919 -10.33506 -10.21839 -9.85717 -9.52111 -9.06490 -8.60479 -8.31548 -6.53480 -6.23316 -3.93593 0.98725 1.96563 2.58322 3.07423 3.20163 3.21280 3.28114 3.36708 3.58469 3.77240 3.87441 4.21726 4.37729 4.45647 4.47833 4.54588 4.74783 4.79737 4.86777 5.00524 5.04093 5.12621 5.13643 5.22545 5.25625 5.30480 5.32101 5.36205 5.37563 5.47248 5.50021 5.51967 5.61065 5.64880 5.67115 5.69954 5.75060 5.82371 5.86303 6.00769 6.27612 6.52783 6.62963 6.71958 6.82686 6.83775 7.59822 8.02571 8.35987 9.22837 10.84909 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009105 B = 0.002984 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.472125 B = 9380.657126 C =12022.810773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.001 3.999 3 C -0.151 4.151 4 C 0.180 3.820 5 N -0.479 5.479 6 C 0.172 3.828 7 C 0.142 3.858 8 H 0.080 0.920 9 C 0.078 3.922 10 O -0.378 6.378 11 C 0.060 3.940 12 C 0.016 3.984 13 N -0.525 5.525 14 C 0.063 3.937 15 C -0.091 4.091 16 C -0.112 4.112 17 S -0.128 6.128 18 C -0.517 4.517 19 H 0.071 0.929 20 C 0.071 3.929 21 N -0.869 5.869 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 N -0.348 5.348 27 O 0.086 5.914 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.047 0.953 41 H 0.037 0.963 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.298 14.100 -13.312 25.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.019 4.019 3 C -0.209 4.209 4 C -0.040 4.040 5 N -0.213 5.213 6 C -0.101 4.101 7 C 0.031 3.969 8 H 0.098 0.902 9 C 0.000 4.000 10 O -0.296 6.296 11 C -0.017 4.017 12 C -0.111 4.111 13 N -0.251 5.251 14 C -0.066 4.066 15 C -0.129 4.129 16 C -0.261 4.261 17 S 0.100 5.900 18 C -0.665 4.665 19 H 0.090 0.910 20 C -0.138 4.138 21 N -0.505 5.505 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 N -0.052 5.052 27 O 0.023 5.977 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.133 0.867 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.792 13.987 -10.986 25.157 hybrid contribution -1.678 -0.911 -2.516 3.158 sum 16.114 13.076 -13.503 24.758 Atomic orbital electron populations 1.21938 0.91915 1.03518 1.03791 1.19857 0.97217 0.95795 0.89077 1.21918 1.01793 0.93413 1.03762 1.28833 0.93971 0.92178 0.89064 1.71872 1.17173 1.13421 1.18800 1.25249 1.00398 0.98898 0.85552 1.20459 0.91998 0.90979 0.93431 0.90243 1.22587 0.89807 0.89571 0.98074 1.88011 1.42521 1.48605 1.50502 1.22788 0.92016 0.97523 0.89350 1.22927 0.95076 0.92411 1.00710 1.62205 1.03411 1.30091 1.29418 1.22212 0.88267 0.98521 0.97607 1.21255 0.93677 1.01433 0.96564 1.23213 0.97868 1.01950 1.03083 1.84616 1.13377 1.82776 1.09254 1.22685 0.99660 1.49114 0.95024 0.91043 1.25013 0.98644 0.95147 0.94973 1.70018 1.31762 1.43599 1.05129 0.86168 0.81168 0.78980 0.79228 1.20263 1.20706 1.19698 1.74772 1.10680 1.03219 1.16525 1.85341 1.54245 1.42683 1.15381 0.91207 0.90353 0.91633 0.86715 0.91887 0.90385 0.91308 0.91591 0.88154 0.91723 0.87847 0.87973 0.93426 0.94457 0.91643 0.90602 0.91409 0.92392 0.92347 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.18 37.16 0.34 -0.60 16 2 C 0.00 0.01 3.39 -91.77 -0.31 -0.31 16 3 C -0.15 -0.71 9.18 37.16 0.34 -0.37 16 4 C 0.18 1.91 7.02 -13.06 -0.09 1.82 16 5 N -0.48 -6.07 11.55 -9.87 -0.11 -6.18 16 6 C 0.17 2.32 5.34 -156.37 -0.84 1.49 16 7 C 0.14 1.79 2.53 -68.75 -0.17 1.61 16 8 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 9 C 0.08 0.87 6.27 37.21 0.23 1.10 16 10 O -0.38 -4.37 10.83 -35.23 -0.38 -4.75 16 11 C 0.06 0.61 7.01 37.21 0.26 0.87 16 12 C 0.02 0.19 5.43 -3.71 -0.02 0.17 16 13 N -0.53 -7.10 4.53 -227.72 -1.03 -8.13 16 14 C 0.06 0.96 4.78 -3.83 -0.02 0.94 16 15 C -0.09 -1.58 5.15 -26.73 -0.14 -1.71 16 16 C -0.11 -2.36 5.67 37.16 0.21 -2.15 16 17 S -0.13 -3.44 21.44 -107.50 -2.30 -5.74 16 18 C -0.52 -15.07 9.50 30.94 0.29 -14.78 16 19 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 20 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 21 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 22 Si 0.92 21.75 29.55 -169.99 -5.02 16.73 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 26 N -0.35 -5.00 12.01 30.90 0.37 -4.63 16 27 O 0.09 1.07 11.31 18.12 0.20 1.27 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 33 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.10 1.18 6.37 -51.93 -0.33 0.85 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.04 0.56 8.12 -51.93 -0.42 0.14 16 42 H 0.07 1.08 6.58 -51.93 -0.34 0.74 16 43 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 44 H 0.07 1.13 6.51 -51.93 -0.34 0.80 16 45 H 0.06 1.24 8.14 -51.91 -0.42 0.82 16 46 H 0.06 1.22 8.14 -51.92 -0.42 0.79 16 47 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 395.65 15.07 5.96 5.96 Total: -1.00 -33.74 395.65 -9.33 -43.07 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -7.74 Total: -2.12 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 0.00 Total: -9.97 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: -0.04 Total: -44.46 kcal Atomic # 8 Polarization: -3.30 SS G_CDS: -0.18 Total: -3.48 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -2.30 Total: -5.74 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.74 -9.33 -43.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355203155.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.546 kcal (2) G-P(sol) polarization free energy of solvation -33.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds