Wall clock time and date at job start Sat Apr 11 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00487 * 2 1 4 4 C 1.50691 * 109.47814 * 180.02562 * 3 2 1 5 5 N 1.29032 * 124.92023 * 89.99343 * 4 3 2 6 6 C 1.31773 * 117.12660 * 180.02562 * 5 4 3 7 7 C 1.50706 * 122.74891 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.46949 * 275.02430 * 7 6 5 9 9 C 1.34769 * 120.00237 * 180.02562 * 8 7 6 10 10 O 1.21587 * 120.00170 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00179 * 180.02562 * 9 8 7 12 12 C 1.46509 * 120.00229 * 179.97438 * 11 9 8 13 13 C 1.52992 * 109.47110 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47595 * 299.99799 * 13 12 11 15 15 C 1.53000 * 109.47281 * 60.00213 * 13 12 11 16 16 C 1.53003 * 109.47106 * 179.97438 * 13 12 11 17 17 C 1.50700 * 109.47374 * 179.97438 * 16 13 12 18 18 H 1.08001 * 119.99780 * 0.02562 * 17 16 13 19 19 C 1.37877 * 120.00102 * 180.02562 * 17 16 13 20 20 N 1.31514 * 119.99780 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00208 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47139 * 89.99801 * 21 19 17 23 23 H 1.48496 * 109.47008 * 209.99699 * 21 19 17 24 24 H 1.48502 * 109.46714 * 330.00061 * 21 19 17 25 25 C 1.33640 * 114.50418 * 0.23455 * 6 5 4 26 26 S 1.70976 * 124.91514 * 270.00551 * 4 3 2 27 27 H 1.09001 * 109.47187 * 300.00216 * 1 2 3 28 28 H 1.09006 * 109.47150 * 60.00184 * 1 2 3 29 29 H 1.08998 * 109.47674 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47017 * 59.99852 * 3 2 1 31 31 H 1.09006 * 109.47301 * 300.00277 * 3 2 1 32 32 H 1.09000 * 109.47318 * 35.01816 * 7 6 5 33 33 H 1.09000 * 109.47161 * 155.02446 * 7 6 5 34 34 H 0.97010 * 119.99909 * 359.97438 * 8 7 6 35 35 H 0.97004 * 120.00422 * 359.97438 * 11 9 8 36 36 H 1.09000 * 109.46533 * 300.00054 * 12 11 9 37 37 H 1.08996 * 109.47040 * 59.99304 * 12 11 9 38 38 H 1.09005 * 109.46986 * 60.00235 * 14 13 12 39 39 H 1.08998 * 109.47487 * 179.97438 * 14 13 12 40 40 H 1.09005 * 109.46997 * 300.00570 * 14 13 12 41 41 H 1.09000 * 109.47290 * 59.99950 * 15 13 12 42 42 H 1.09000 * 109.47263 * 179.97438 * 15 13 12 43 43 H 1.09005 * 109.46965 * 299.99560 * 15 13 12 44 44 H 1.09005 * 109.47135 * 300.00427 * 16 13 12 45 45 H 1.09005 * 109.46763 * 59.99872 * 16 13 12 46 46 H 0.97003 * 119.99925 * 179.97438 * 20 19 17 47 47 H 1.07997 * 126.04027 * 179.76286 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2484 1.1282 -1.0589 6 6 5.5499 1.0246 -0.8808 7 6 6.5259 0.9468 -2.0265 8 7 6.6413 -0.4428 -2.4761 9 6 7.4640 -0.7546 -3.4969 10 8 8.1101 0.1173 -4.0452 11 7 7.5697 -2.0329 -3.9109 12 6 8.4636 -2.3719 -5.0210 13 6 8.3978 -3.8769 -5.2875 14 6 8.8325 -4.6366 -4.0326 15 6 6.9638 -4.2686 -5.6496 16 6 9.3308 -4.2308 -6.4473 17 6 9.2665 -5.7135 -6.7094 18 1 8.6240 -6.3406 -6.1091 19 6 10.0279 -6.2694 -7.7156 20 7 10.8098 -5.5056 -8.4469 21 14 9.9476 -8.1071 -8.0410 22 1 8.8792 -8.3879 -9.0334 23 1 11.2530 -8.5728 -8.5739 24 1 9.6467 -8.8213 -6.7742 25 6 5.9331 0.9888 0.3990 26 16 4.4886 1.1088 1.4010 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 6.1703 1.5665 -2.8496 33 1 7.5016 1.3044 -1.6975 34 1 6.1261 -1.1385 -2.0384 35 1 7.0540 -2.7285 -3.4738 36 1 8.1541 -1.8303 -5.9149 37 1 9.4853 -2.0932 -4.7630 38 1 8.1674 -4.3845 -3.2066 39 1 8.7852 -5.7089 -4.2223 40 1 9.8542 -4.3576 -3.7747 41 1 6.6541 -3.7274 -6.5437 42 1 6.9170 -5.3408 -5.8399 43 1 6.2987 -4.0164 -4.8236 44 1 9.0208 -3.6896 -7.3413 45 1 10.3526 -3.9517 -6.1898 46 1 11.3457 -5.8968 -9.1545 47 1 6.9487 0.9034 0.7560 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358040211.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:15 Heat of formation + Delta-G solvation = -39.886411 kcal Electronic energy + Delta-G solvation = -26544.716841 eV Core-core repulsion = 22661.518843 eV Total energy + Delta-G solvation = -3883.197998 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.58292 -39.64549 -38.31826 -37.19792 -34.75085 -33.53018 -32.20830 -31.71526 -28.82560 -27.57170 -26.94067 -26.50526 -26.46234 -25.55971 -23.17093 -22.60714 -20.66318 -20.27189 -18.87212 -18.37937 -17.48707 -17.12065 -16.49187 -16.35656 -16.18069 -16.00852 -15.35453 -14.87402 -14.75061 -14.44249 -14.18402 -13.92439 -13.85196 -13.53323 -13.21751 -12.98723 -12.84171 -12.72192 -12.68894 -12.06937 -12.03230 -11.99109 -11.75144 -11.10546 -10.98079 -10.82606 -10.59744 -10.35484 -10.35383 -10.21722 -10.10245 -10.08468 -9.89084 -9.83016 -9.36418 -9.16075 -9.14958 -8.89008 -8.50191 -8.32904 -5.96950 -3.98018 0.12277 0.84056 1.22099 2.04542 3.07622 3.15883 3.32993 3.39867 3.41794 3.44989 3.76268 4.31201 4.45913 4.52031 4.56585 4.69747 4.76698 4.81917 4.84964 4.91522 5.19345 5.30517 5.38491 5.52720 5.56548 5.67930 5.69576 5.80279 6.23250 6.27147 6.32615 6.42509 6.46714 6.46942 6.64949 6.67622 6.85395 7.07222 7.11510 7.12134 7.19827 7.27190 7.68094 7.80782 8.01998 8.21868 8.44044 8.82380 9.06778 9.64780 11.14468 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017497 B = 0.001850 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.918089 B =15129.622739 C =16014.156494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.140 3.860 4 C 0.038 3.962 5 N -0.440 5.440 6 C 0.050 3.950 7 C 0.219 3.781 8 N -0.747 5.747 9 C 0.703 3.297 10 O -0.594 6.594 11 N -0.736 5.736 12 C 0.147 3.853 13 C -0.072 4.072 14 C -0.126 4.126 15 C -0.126 4.126 16 C 0.036 3.964 17 C -0.510 4.510 18 H 0.059 0.941 19 C 0.055 3.945 20 N -0.894 5.894 21 Si 0.889 3.111 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 C -0.231 4.231 26 S 0.153 5.847 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.395 0.605 35 H 0.394 0.606 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.028 0.972 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.066 0.934 43 H 0.028 0.972 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.260 0.740 47 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.765 14.872 23.595 33.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.060 3.940 4 C -0.240 4.240 5 N -0.156 5.156 6 C -0.083 4.083 7 C 0.092 3.908 8 N -0.404 5.404 9 C 0.402 3.598 10 O -0.472 6.472 11 N -0.391 5.391 12 C 0.024 3.976 13 C -0.073 4.073 14 C -0.183 4.183 15 C -0.184 4.184 16 C -0.001 4.001 17 C -0.548 4.548 18 H 0.077 0.923 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.200 1.200 25 C -0.371 4.371 26 S 0.408 5.592 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.229 0.771 35 H 0.228 0.772 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.047 0.953 44 H 0.037 0.963 45 H 0.037 0.963 46 H 0.069 0.931 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -18.393 15.553 23.489 33.644 hybrid contribution -0.054 -1.502 -0.535 1.595 sum -18.447 14.051 22.954 32.628 Atomic orbital electron populations 1.22821 0.79796 1.03501 1.00363 1.87964 1.20454 1.26153 1.95522 1.20778 0.84473 0.86213 1.02529 1.26530 1.00359 1.05686 0.91438 1.66054 1.04480 1.13423 1.31632 1.20284 0.90111 1.03712 0.94227 1.19465 0.95412 0.83422 0.92537 1.45024 1.48661 1.09203 1.37494 1.15933 0.80227 0.83599 0.79999 1.90920 1.49504 1.47588 1.59200 1.45360 1.48805 1.06587 1.38334 1.21494 0.92501 0.96381 0.87252 1.20911 0.97395 0.90767 0.98214 1.21752 0.99650 1.01640 0.95295 1.21755 0.94805 1.02596 0.99215 1.19092 0.93418 0.96605 0.91030 1.21185 1.24642 0.92906 1.16104 0.92279 1.25022 0.95597 0.97693 0.96278 1.69968 1.27300 1.35032 1.21059 0.86644 0.77271 0.85950 0.78409 1.20799 1.21374 1.19977 1.27127 1.03972 1.10154 0.95883 1.84004 0.97462 1.65859 1.11891 0.93689 0.93474 0.88983 0.90836 0.89906 0.89825 0.89786 0.77139 0.77150 0.91980 0.91987 0.95325 0.91509 0.93366 0.93351 0.91521 0.95292 0.96295 0.96297 0.93070 0.79829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.38 -3.19 10.69 -35.23 -0.38 -3.56 16 3 C 0.14 0.94 6.51 36.00 0.23 1.18 16 4 C 0.04 0.33 7.02 -13.46 -0.09 0.24 16 5 N -0.44 -4.78 10.53 -8.06 -0.08 -4.87 16 6 C 0.05 0.49 6.11 -84.23 -0.51 -0.03 16 7 C 0.22 2.42 6.11 -5.19 -0.03 2.39 16 8 N -0.75 -9.14 5.55 -66.41 -0.37 -9.51 16 9 C 0.70 11.29 8.57 -86.93 -0.74 10.55 16 10 O -0.59 -11.93 16.34 5.29 0.09 -11.84 16 11 N -0.74 -11.31 4.96 -65.23 -0.32 -11.64 16 12 C 0.15 2.71 4.56 -4.04 -0.02 2.69 16 13 C -0.07 -1.40 0.54 -154.51 -0.08 -1.49 16 14 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 15 C -0.13 -2.29 8.05 37.16 0.30 -1.99 16 16 C 0.04 0.90 4.04 -27.88 -0.11 0.78 16 17 C -0.51 -13.67 7.65 -34.44 -0.26 -13.94 16 18 H 0.06 1.52 5.68 -52.49 -0.30 1.23 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 21 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 25 C -0.23 -1.75 11.12 29.12 0.32 -1.42 16 26 S 0.15 1.02 23.18 -107.50 -2.49 -1.47 16 27 H 0.04 0.14 8.14 -51.93 -0.42 -0.29 16 28 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.40 4.14 8.48 -40.82 -0.35 3.80 16 35 H 0.39 5.18 6.18 -40.82 -0.25 4.93 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 39 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 43 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 399.65 15.07 6.02 6.02 Total: -1.00 -34.02 399.65 -8.86 -42.88 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.35 Total: 3.79 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 0.31 Total: -0.28 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.04 Total: -51.91 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.29 Total: -15.41 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.49 Total: -1.47 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.02 -8.86 -42.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358040211.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.993 kcal (2) G-P(sol) polarization free energy of solvation -34.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds