Wall clock time and date at job start Sat Apr 11 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00487 * 2 1 4 4 C 1.50691 * 109.47814 * 180.02562 * 3 2 1 5 5 N 1.29032 * 124.92023 * 89.99343 * 4 3 2 6 6 C 1.31773 * 117.12660 * 180.02562 * 5 4 3 7 7 C 1.50706 * 122.74891 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.46949 * 275.02430 * 7 6 5 9 9 C 1.34769 * 120.00237 * 180.02562 * 8 7 6 10 10 O 1.21587 * 120.00170 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00179 * 180.02562 * 9 8 7 12 12 C 1.46509 * 120.00229 * 179.97438 * 11 9 8 13 13 C 1.52992 * 109.47110 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47595 * 299.99799 * 13 12 11 15 15 C 1.53000 * 109.47281 * 60.00213 * 13 12 11 16 16 C 1.53003 * 109.47106 * 179.97438 * 13 12 11 17 17 C 1.50700 * 109.47374 * 179.97438 * 16 13 12 18 18 H 1.08001 * 119.99780 * 0.02562 * 17 16 13 19 19 C 1.37877 * 120.00102 * 180.02562 * 17 16 13 20 20 N 1.31514 * 119.99780 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00208 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47139 * 89.99801 * 21 19 17 23 23 H 1.48496 * 109.47008 * 209.99699 * 21 19 17 24 24 H 1.48502 * 109.46714 * 330.00061 * 21 19 17 25 25 C 1.33640 * 114.50418 * 0.23455 * 6 5 4 26 26 S 1.70976 * 124.91514 * 270.00551 * 4 3 2 27 27 H 1.09001 * 109.47187 * 300.00216 * 1 2 3 28 28 H 1.09006 * 109.47150 * 60.00184 * 1 2 3 29 29 H 1.08998 * 109.47674 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47017 * 59.99852 * 3 2 1 31 31 H 1.09006 * 109.47301 * 300.00277 * 3 2 1 32 32 H 1.09000 * 109.47318 * 35.01816 * 7 6 5 33 33 H 1.09000 * 109.47161 * 155.02446 * 7 6 5 34 34 H 0.97010 * 119.99909 * 359.97438 * 8 7 6 35 35 H 0.97004 * 120.00422 * 359.97438 * 11 9 8 36 36 H 1.09000 * 109.46533 * 300.00054 * 12 11 9 37 37 H 1.08996 * 109.47040 * 59.99304 * 12 11 9 38 38 H 1.09005 * 109.46986 * 60.00235 * 14 13 12 39 39 H 1.08998 * 109.47487 * 179.97438 * 14 13 12 40 40 H 1.09005 * 109.46997 * 300.00570 * 14 13 12 41 41 H 1.09000 * 109.47290 * 59.99950 * 15 13 12 42 42 H 1.09000 * 109.47263 * 179.97438 * 15 13 12 43 43 H 1.09005 * 109.46965 * 299.99560 * 15 13 12 44 44 H 1.09005 * 109.47135 * 300.00427 * 16 13 12 45 45 H 1.09005 * 109.46763 * 59.99872 * 16 13 12 46 46 H 0.97003 * 119.99925 * 179.97438 * 20 19 17 47 47 H 1.07997 * 126.04027 * 179.76286 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2484 1.1282 -1.0589 6 6 5.5499 1.0246 -0.8808 7 6 6.5259 0.9468 -2.0265 8 7 6.6413 -0.4428 -2.4761 9 6 7.4640 -0.7546 -3.4969 10 8 8.1101 0.1173 -4.0452 11 7 7.5697 -2.0329 -3.9109 12 6 8.4636 -2.3719 -5.0210 13 6 8.3978 -3.8769 -5.2875 14 6 8.8325 -4.6366 -4.0326 15 6 6.9638 -4.2686 -5.6496 16 6 9.3308 -4.2308 -6.4473 17 6 9.2665 -5.7135 -6.7094 18 1 8.6240 -6.3406 -6.1091 19 6 10.0279 -6.2694 -7.7156 20 7 10.8098 -5.5056 -8.4469 21 14 9.9476 -8.1071 -8.0410 22 1 8.8792 -8.3879 -9.0334 23 1 11.2530 -8.5728 -8.5739 24 1 9.6467 -8.8213 -6.7742 25 6 5.9331 0.9888 0.3990 26 16 4.4886 1.1088 1.4010 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 6.1703 1.5665 -2.8496 33 1 7.5016 1.3044 -1.6975 34 1 6.1261 -1.1385 -2.0384 35 1 7.0540 -2.7285 -3.4738 36 1 8.1541 -1.8303 -5.9149 37 1 9.4853 -2.0932 -4.7630 38 1 8.1674 -4.3845 -3.2066 39 1 8.7852 -5.7089 -4.2223 40 1 9.8542 -4.3576 -3.7747 41 1 6.6541 -3.7274 -6.5437 42 1 6.9170 -5.3408 -5.8399 43 1 6.2987 -4.0164 -4.8236 44 1 9.0208 -3.6896 -7.3413 45 1 10.3526 -3.9517 -6.1898 46 1 11.3457 -5.8968 -9.1545 47 1 6.9487 0.9034 0.7560 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358040211.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:14 Heat of formation + Delta-G solvation = -64.861227 kcal Electronic energy + Delta-G solvation = -26545.799830 eV Core-core repulsion = 22661.518843 eV Total energy + Delta-G solvation = -3884.280987 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.42542 -40.77742 -38.88627 -38.69029 -35.83874 -35.22329 -33.92914 -32.56066 -29.49441 -29.06300 -28.31910 -27.94863 -27.07830 -26.77537 -24.77983 -23.58635 -21.96284 -20.91417 -20.18620 -19.43662 -18.63073 -18.34598 -17.61666 -17.31908 -16.99193 -16.70049 -16.54140 -16.49257 -15.73560 -15.67734 -15.36261 -15.18826 -14.80113 -14.62932 -14.32576 -14.29877 -14.17539 -13.92361 -13.68394 -13.43174 -13.13706 -12.85873 -12.71184 -12.57804 -12.43121 -12.37594 -12.32149 -12.21267 -11.96112 -11.52121 -11.49212 -10.97969 -10.84485 -10.82708 -10.67197 -10.49816 -10.48446 -10.40463 -9.95463 -9.77129 -8.12360 -6.20035 -0.46293 0.29330 0.62597 1.27093 1.43441 1.43913 1.54317 1.99874 2.15154 2.45604 2.66040 3.20791 3.21856 3.38469 3.74716 3.98267 4.00611 4.11229 4.17171 4.24337 4.24446 4.38911 4.51825 4.52500 4.57888 4.70390 4.71769 4.75788 4.80825 4.89119 4.96784 4.98321 5.12473 5.13834 5.37318 5.41294 5.50133 5.51659 5.55247 5.60499 5.82258 5.91386 5.95888 6.06489 6.32710 6.66142 6.94698 7.06826 7.47321 7.56380 9.00091 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017497 B = 0.001850 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.918089 B =15129.622739 C =16014.156494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.137 3.863 4 C 0.018 3.982 5 N -0.475 5.475 6 C 0.031 3.969 7 C 0.221 3.779 8 N -0.728 5.728 9 C 0.702 3.298 10 O -0.637 6.637 11 N -0.723 5.723 12 C 0.162 3.838 13 C -0.064 4.064 14 C -0.120 4.120 15 C -0.121 4.121 16 C 0.040 3.960 17 C -0.512 4.512 18 H 0.073 0.927 19 C -0.007 4.007 20 N -0.938 5.938 21 Si 0.960 3.040 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.259 1.259 25 C -0.226 4.226 26 S 0.210 5.790 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.407 0.593 35 H 0.409 0.591 36 H 0.042 0.958 37 H 0.046 0.954 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.038 0.962 41 H 0.035 0.965 42 H 0.056 0.944 43 H 0.067 0.933 44 H -0.014 1.014 45 H -0.012 1.012 46 H 0.259 0.741 47 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.720 14.002 26.723 36.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.057 3.943 4 C -0.260 4.260 5 N -0.192 5.192 6 C -0.102 4.102 7 C 0.094 3.906 8 N -0.385 5.385 9 C 0.402 3.598 10 O -0.519 6.519 11 N -0.380 5.380 12 C 0.037 3.963 13 C -0.064 4.064 14 C -0.178 4.178 15 C -0.178 4.178 16 C 0.002 3.998 17 C -0.550 4.550 18 H 0.091 0.909 19 C -0.204 4.204 20 N -0.579 5.579 21 Si 0.785 3.215 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.183 1.183 25 C -0.366 4.366 26 S 0.466 5.534 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.243 0.757 35 H 0.246 0.754 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.004 0.996 45 H 0.006 0.994 46 H 0.068 0.932 47 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -20.416 14.664 26.679 36.655 hybrid contribution 0.506 -1.140 -1.418 1.888 sum -19.910 13.524 25.261 34.892 Atomic orbital electron populations 1.22988 0.78288 1.04171 1.01519 1.87907 1.22225 1.27139 1.95763 1.20955 0.83503 0.85962 1.03864 1.26912 1.01421 1.05559 0.92107 1.66020 1.05128 1.14770 1.33299 1.20024 0.89787 1.06003 0.94392 1.19441 0.96309 0.82159 0.92653 1.44877 1.47300 1.10242 1.36039 1.16042 0.80303 0.83086 0.80392 1.90897 1.51370 1.48803 1.60781 1.45017 1.48408 1.07013 1.37531 1.21074 0.92292 0.95385 0.87577 1.20706 0.97129 0.91608 0.96970 1.21682 1.00142 1.00477 0.95459 1.21690 0.94210 1.01683 1.00260 1.18972 0.93032 0.95751 0.92022 1.21587 1.23982 0.93802 1.15675 0.90935 1.25970 0.95437 1.02649 0.96345 1.70127 1.28604 1.37223 1.21957 0.85523 0.77080 0.80116 0.78775 1.20234 1.21582 1.18329 1.27430 1.05626 1.08130 0.95458 1.83799 0.95654 1.64156 1.09801 0.91768 0.93084 0.88627 0.87993 0.90091 0.91777 0.89042 0.75729 0.75398 0.93941 0.93553 0.91335 0.92575 0.94266 0.94536 0.92483 0.91465 0.99587 0.99391 0.93208 0.77678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -6.26 10.69 -148.98 -1.59 -7.85 16 3 C 0.14 1.62 6.51 71.23 0.46 2.09 16 4 C 0.02 0.28 7.02 88.52 0.62 0.90 16 5 N -0.48 -9.90 10.53 -179.41 -1.89 -11.79 16 6 C 0.03 0.56 6.11 41.53 0.25 0.81 16 7 C 0.22 4.78 6.11 85.63 0.52 5.30 16 8 N -0.73 -16.93 5.55 -482.30 -2.68 -19.60 16 9 C 0.70 22.11 8.57 179.06 1.53 23.65 16 10 O -0.64 -25.96 16.34 -3.99 -0.07 -26.02 16 11 N -0.72 -21.30 4.96 -478.54 -2.38 -23.68 16 12 C 0.16 6.02 4.56 86.37 0.39 6.41 16 13 C -0.06 -2.46 0.54 -52.18 -0.03 -2.49 16 14 C -0.12 -4.10 8.05 71.98 0.58 -3.52 16 15 C -0.12 -4.21 8.05 71.98 0.58 -3.63 16 16 C 0.04 2.06 4.04 29.85 0.12 2.18 16 17 C -0.51 -27.73 7.65 25.60 0.20 -27.53 16 18 H 0.07 3.67 5.68 -2.91 -0.02 3.65 16 19 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 20 N -0.94 -57.58 13.29 21.45 0.28 -57.29 16 21 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 24 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 25 C -0.23 -2.86 11.12 66.78 0.74 -2.12 16 26 S 0.21 2.24 23.18 -56.49 -1.31 0.93 16 27 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 29 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 1.83 8.10 -2.39 -0.02 1.81 16 34 H 0.41 7.65 8.48 -92.70 -0.79 6.87 16 35 H 0.41 9.51 6.18 -92.71 -0.57 8.94 16 36 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.07 1.78 6.86 -2.38 -0.02 1.76 16 39 H 0.06 2.04 6.62 -2.39 -0.02 2.03 16 40 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.06 2.10 6.62 -2.39 -0.02 2.08 16 43 H 0.07 1.81 6.86 -2.38 -0.02 1.79 16 44 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 45 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 46 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 47 H 0.21 1.56 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -76.39 399.65 -0.27 -76.66 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -0.37 Total: 19.06 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 7.69 Total: 3.55 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -6.66 Total: -112.36 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -1.66 Total: -33.87 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -1.31 Total: 0.93 kcal Total: -76.39 -0.27 -76.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358040211.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.801 kcal (2) G-P(sol) polarization free energy of solvation -76.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds