Wall clock time and date at job start Sat Apr 11 2020 06:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47275 * 2 1 4 4 N 1.46500 * 109.46885 * 119.99914 * 2 1 3 5 5 C 1.35206 * 126.00264 * 274.71193 * 4 2 1 6 6 C 1.34574 * 107.61758 * 180.30727 * 5 4 2 7 7 C 1.40490 * 108.03650 * 359.89572 * 6 5 4 8 8 N 1.30123 * 108.22964 * 0.13097 * 7 6 5 9 9 C 1.50952 * 123.48425 * 180.28738 * 7 6 5 10 10 C 1.53374 * 108.20345 * 16.52867 * 9 7 6 11 11 H 1.08994 * 109.42941 * 69.45663 * 10 9 7 12 12 N 1.46502 * 109.37572 * 189.31460 * 10 9 7 13 13 S 1.65601 * 120.00104 * 265.25100 * 12 10 9 14 14 O 1.42098 * 104.27650 * 181.07087 * 13 12 10 15 15 O 1.42101 * 104.27686 * 308.92838 * 13 12 10 16 16 C 1.81401 * 104.44753 * 64.99998 * 13 12 10 17 17 C 1.53006 * 109.46937 * 180.02562 * 16 13 12 18 18 C 1.50697 * 109.47027 * 180.02562 * 17 16 13 19 19 H 1.07995 * 120.00146 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99611 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00260 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99752 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47470 * 89.99304 * 22 20 18 24 24 H 1.48504 * 109.47134 * 209.99733 * 22 20 18 25 25 H 1.48499 * 109.46865 * 329.99213 * 22 20 18 26 26 C 1.53028 * 109.74692 * 309.36573 * 10 9 7 27 27 C 1.50880 * 128.32057 * 179.72807 * 6 5 4 28 28 H 1.09006 * 109.47207 * 300.00388 * 1 2 3 29 29 H 1.09002 * 109.46813 * 60.00166 * 1 2 3 30 30 H 1.09001 * 109.47619 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47021 * 239.99210 * 2 1 3 32 32 H 1.08996 * 109.47144 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47064 * 299.99680 * 3 2 1 34 34 H 1.09006 * 109.47320 * 59.99681 * 3 2 1 35 35 H 1.08003 * 126.18831 * 0.28820 * 5 4 2 36 36 H 1.09006 * 109.71323 * 136.20016 * 9 7 6 37 37 H 1.08999 * 109.71400 * 256.84280 * 9 7 6 38 38 H 0.97000 * 120.00193 * 85.25295 * 12 10 9 39 39 H 1.08999 * 109.47186 * 299.99826 * 16 13 12 40 40 H 1.09000 * 109.47338 * 60.00317 * 16 13 12 41 41 H 1.09004 * 109.46810 * 300.00315 * 17 16 13 42 42 H 1.09000 * 109.46972 * 59.99941 * 17 16 13 43 43 H 0.96999 * 119.99999 * 180.02562 * 21 20 18 44 44 H 1.08996 * 109.43142 * 311.68367 * 26 10 9 45 45 H 1.08998 * 109.43339 * 191.82170 * 26 10 9 46 46 H 1.08999 * 109.71895 * 316.33080 * 27 6 5 47 47 H 1.08996 * 109.72237 * 76.94452 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1985 -0.1362 2.4161 6 6 2.6634 -1.0970 3.2356 7 6 2.7712 -2.2859 2.4948 8 7 2.3869 -2.0421 1.2757 9 6 3.2552 -3.5906 3.0796 10 6 3.1871 -3.4850 4.6082 11 1 2.1442 -3.4649 4.9241 12 7 3.8549 -4.6440 5.2057 13 16 2.9706 -5.9731 5.6462 14 8 3.9292 -6.8641 6.1998 15 8 1.9166 -5.4454 6.4399 16 6 2.3242 -6.6254 4.0818 17 6 1.4789 -7.8703 4.3588 18 6 0.9425 -8.4126 3.0591 19 1 1.1802 -7.9185 2.1287 20 6 0.1472 -9.5389 3.0580 21 7 -0.1427 -10.1403 4.1911 22 14 -0.5172 -10.2115 1.4470 23 1 0.4452 -11.1933 0.8859 24 1 -1.8211 -10.8796 1.6897 25 1 -0.7042 -9.0962 0.4845 26 6 3.8835 -2.2028 5.0694 27 6 3.0276 -0.9860 4.6956 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 2.0046 0.8919 2.6843 36 1 2.6168 -4.4057 2.7386 37 1 4.2838 -3.7737 2.7690 38 1 4.8150 -4.6330 5.3434 39 1 1.7069 -5.8675 3.5995 40 1 3.1549 -6.8882 3.4267 41 1 2.0959 -8.6284 4.8413 42 1 0.6483 -7.6071 5.0136 43 1 -0.7018 -10.9329 4.1903 44 1 4.8566 -2.1242 4.5847 45 1 4.0189 -2.2324 6.1505 46 1 3.5955 -0.0711 4.8644 47 1 2.1212 -0.9732 5.3008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360109336.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:26 Heat of formation + Delta-G solvation = -18.924215 kcal Electronic energy + Delta-G solvation = -28003.737356 eV Core-core repulsion = 24121.448347 eV Total energy + Delta-G solvation = -3882.289009 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.64190 -37.97184 -36.50755 -35.76398 -35.37890 -33.86216 -33.12736 -31.61174 -31.09991 -28.96931 -28.41482 -27.68931 -25.57694 -24.46607 -22.03437 -21.88303 -21.47352 -20.23048 -19.39067 -18.70462 -17.44667 -16.92729 -16.41978 -16.18021 -15.58785 -15.44568 -15.08880 -14.85570 -14.53535 -14.35968 -14.10621 -13.85156 -13.56113 -13.42165 -13.30475 -13.03758 -12.73305 -12.63755 -12.47370 -12.13557 -12.04834 -11.71688 -11.69461 -11.61967 -11.54908 -11.50436 -11.29064 -11.22324 -11.04363 -10.91396 -10.82770 -10.47721 -10.35904 -10.28948 -9.79072 -9.44906 -9.30364 -9.00373 -8.46359 -8.38073 -6.08647 -4.13659 0.83956 1.80291 2.26960 2.67383 3.15581 3.29132 3.35210 3.38570 4.06291 4.27961 4.41345 4.42534 4.45831 4.57610 4.62167 4.68871 4.71153 4.91355 4.96101 5.00749 5.11213 5.17049 5.22822 5.26691 5.31630 5.34545 5.38710 5.47597 5.53864 5.59254 5.66031 5.72658 5.74740 5.78066 5.88606 6.00297 6.04889 6.10171 6.26740 6.54278 6.61234 6.94174 7.15120 7.34770 7.41019 7.67716 7.84991 8.22058 8.89937 9.50944 11.02450 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009613 B = 0.003377 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.970161 B = 8288.513567 C =10742.731523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.157 3.843 3 C -0.163 4.163 4 N -0.375 5.375 5 C 0.058 3.942 6 C -0.239 4.239 7 C 0.086 3.914 8 N -0.284 5.284 9 C -0.066 4.066 10 C 0.154 3.846 11 H 0.098 0.902 12 N -1.121 6.121 13 S 2.591 3.409 14 O -0.968 6.968 15 O -0.966 6.966 16 C -0.592 4.592 17 C 0.029 3.971 18 C -0.518 4.518 19 H 0.062 0.938 20 C 0.058 3.942 21 N -0.891 5.891 22 Si 0.899 3.101 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.118 4.118 27 C -0.037 4.037 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.169 0.831 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.413 0.587 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.264 0.736 44 H 0.070 0.930 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.969 26.001 -5.249 27.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.055 3.945 3 C -0.221 4.221 4 N -0.158 5.158 5 C -0.086 4.086 6 C -0.251 4.251 7 C -0.083 4.083 8 N -0.104 5.104 9 C -0.107 4.107 10 C 0.046 3.954 11 H 0.116 0.884 12 N -0.877 5.877 13 S 2.689 3.311 14 O -0.958 6.958 15 O -0.956 6.956 16 C -0.726 4.726 17 C -0.010 4.010 18 C -0.558 4.558 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.529 5.529 22 Si 0.726 3.274 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.157 4.157 27 C -0.076 4.076 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.119 0.881 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.186 0.814 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.246 0.754 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.329 25.161 -5.569 26.536 hybrid contribution 0.009 0.052 -0.902 0.903 sum 6.338 25.213 -6.471 26.790 Atomic orbital electron populations 1.22253 0.93653 1.03605 1.02897 1.21209 0.94807 0.92516 0.85962 1.22189 1.02239 0.94148 1.03552 1.48834 1.51643 1.07000 1.08328 1.21854 1.01588 0.99427 0.85714 1.20078 1.13794 0.93163 0.98020 1.22125 0.98888 0.96198 0.91095 1.77099 1.20419 0.93096 1.19782 1.20837 1.02792 0.92395 0.94664 1.20734 0.98030 0.85784 0.90851 0.88365 1.55874 1.20691 1.31222 1.79866 1.05597 0.74286 0.73089 0.78167 1.93552 1.60666 1.64414 1.77164 1.93543 1.57694 1.77884 1.66449 1.30564 1.11499 1.11526 1.18976 1.18954 0.94162 0.88523 0.99378 1.21015 1.31157 1.11258 0.92362 0.92013 1.25058 0.96108 0.96658 0.96645 1.69956 1.37312 1.20152 1.25518 0.86488 0.78396 0.79148 0.83379 1.20475 1.21044 1.19759 1.21798 0.99152 0.92919 1.01838 1.19956 0.99556 0.97815 0.90304 0.91919 0.90592 0.91368 0.88093 0.91546 0.90051 0.91563 0.81395 0.88865 0.88901 0.75380 0.86235 0.85937 0.94843 0.94839 0.92580 0.91137 0.90389 0.90960 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 9.52 37.16 0.35 -0.79 16 2 C 0.16 1.19 3.93 -67.93 -0.27 0.92 16 3 C -0.16 -0.77 8.83 37.16 0.33 -0.44 16 4 N -0.37 -4.07 3.54 -54.99 -0.19 -4.26 16 5 C 0.06 0.56 10.54 -17.36 -0.18 0.37 16 6 C -0.24 -2.61 5.89 -104.98 -0.62 -3.23 16 7 C 0.09 1.12 7.10 -82.34 -0.58 0.54 16 8 N -0.28 -4.01 12.56 33.75 0.42 -3.58 16 9 C -0.07 -0.80 5.78 -27.57 -0.16 -0.96 16 10 C 0.15 1.83 2.63 -67.72 -0.18 1.65 16 11 H 0.10 1.29 7.43 -51.93 -0.39 0.90 16 12 N -1.12 -14.13 5.36 -4.71 -0.03 -14.16 16 13 S 2.59 46.12 5.44 -107.50 -0.58 45.54 16 14 O -0.97 -20.00 18.08 -57.54 -1.04 -21.04 16 15 O -0.97 -20.03 17.39 -57.54 -1.00 -21.03 16 16 C -0.59 -11.39 5.37 37.16 0.20 -11.19 16 17 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 18 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 19 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 22 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 C -0.12 -1.10 5.39 -26.51 -0.14 -1.24 16 27 C -0.04 -0.33 6.28 -27.59 -0.17 -0.50 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.27 7.16 -51.93 -0.37 -0.11 16 35 H 0.17 1.02 7.26 -52.48 -0.38 0.64 16 36 H 0.09 1.23 6.02 -51.93 -0.31 0.91 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.41 4.19 8.80 -34.47 -0.30 3.89 16 39 H 0.12 2.10 6.64 -51.92 -0.34 1.76 16 40 H 0.12 2.11 8.14 -51.92 -0.42 1.68 16 41 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 390.62 15.07 5.89 5.89 Total: -1.00 -37.34 390.62 -10.35 -47.69 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -7.56 Total: 2.01 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: -1.98 Total: -27.54 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.94 Total: -48.06 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -2.04 Total: -42.07 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 46.12 SS G_CDS: -0.58 Total: 45.54 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.34 -10.35 -47.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360109336.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.763 kcal (2) G-P(sol) polarization free energy of solvation -37.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds