Wall clock time and date at job start Sat Apr 11 2020 06:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.46909 * 2 1 4 4 N 1.46495 * 109.47234 * 120.00351 * 2 1 3 5 5 N 1.40297 * 126.09142 * 300.02173 * 4 2 1 6 6 C 1.31074 * 108.26839 * 180.02562 * 5 4 2 7 7 C 1.39289 * 108.08084 * 359.97438 * 6 5 4 8 8 C 1.34324 * 126.09031 * 120.02358 * 4 2 1 9 9 C 1.50822 * 128.03478 * 359.87122 * 8 4 2 10 10 H 1.08996 * 109.68781 * 76.83840 * 9 8 4 11 11 N 1.46500 * 109.68413 * 316.31765 * 9 8 4 12 12 S 1.65591 * 120.00325 * 145.00309 * 11 9 8 13 13 O 1.42098 * 104.28043 * 181.07218 * 12 11 9 14 14 O 1.42101 * 104.27584 * 308.92865 * 12 11 9 15 15 C 1.81397 * 104.45095 * 64.99637 * 12 11 9 16 16 C 1.53004 * 109.47144 * 180.02562 * 15 12 11 17 17 C 1.50693 * 109.47213 * 180.02562 * 16 15 12 18 18 H 1.08006 * 120.00422 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00174 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00374 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 120.00013 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.46771 * 90.00271 * 21 19 17 23 23 H 1.48494 * 109.47419 * 209.99883 * 21 19 17 24 24 H 1.48500 * 109.47183 * 330.00473 * 21 19 17 25 25 C 1.53370 * 108.38157 * 196.59504 * 9 8 4 26 26 C 1.53110 * 109.50679 * 310.05703 * 25 9 8 27 27 C 1.50838 * 127.90217 * 179.86657 * 7 6 5 28 28 H 1.09003 * 109.47296 * 299.99509 * 1 2 3 29 29 H 1.08998 * 109.47763 * 60.00044 * 1 2 3 30 30 H 1.09002 * 109.47356 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46843 * 240.00209 * 2 1 3 32 32 H 1.09005 * 109.46776 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47331 * 300.00228 * 3 2 1 34 34 H 1.08993 * 109.47191 * 60.00449 * 3 2 1 35 35 H 1.08001 * 125.95617 * 179.97438 * 6 5 4 36 36 H 0.97002 * 119.99353 * 324.99773 * 11 9 8 37 37 H 1.08994 * 109.47578 * 300.00087 * 15 12 11 38 38 H 1.09003 * 109.46745 * 60.00633 * 15 12 11 39 39 H 1.09003 * 109.47503 * 300.00605 * 16 15 12 40 40 H 1.08999 * 109.47010 * 59.99936 * 16 15 12 41 41 H 0.97002 * 120.00169 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.46482 * 70.06395 * 25 9 8 43 43 H 1.09000 * 109.46886 * 190.05270 * 25 9 8 44 44 H 1.08998 * 109.46677 * 190.28849 * 26 25 9 45 45 H 1.09005 * 109.46515 * 310.26575 * 26 25 9 46 46 H 1.08998 * 109.68267 * 316.35732 * 27 7 6 47 47 H 1.08999 * 109.68302 * 76.90958 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 7 1.7590 -0.3248 2.5254 6 6 2.3647 -1.1801 3.3126 7 6 3.0236 -2.1114 2.5135 8 6 2.7941 -1.7870 1.2154 9 6 3.3388 -2.5608 0.0409 10 1 4.1818 -2.0236 -0.3936 11 7 2.2896 -2.7308 -0.9673 12 16 2.6775 -2.7140 -2.5771 13 8 1.4312 -2.8776 -3.2397 14 8 3.4440 -1.5287 -2.7404 15 6 3.7183 -4.1818 -2.8072 16 6 4.1471 -4.2782 -4.2728 17 6 5.0112 -5.4978 -4.4641 18 1 5.2322 -6.1404 -3.6245 19 6 5.5199 -5.7936 -5.7110 20 7 6.2736 -6.8583 -5.8782 21 14 5.1373 -4.6829 -7.1634 22 1 6.1751 -3.6254 -7.2646 23 1 5.1263 -5.4866 -8.4119 24 1 3.8066 -4.0534 -6.9681 25 6 3.8029 -3.9347 0.5402 26 6 4.7040 -3.7559 1.7651 27 6 3.8590 -3.2866 2.9567 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4424 -0.0005 33 1 1.6765 1.9563 -0.8899 34 1 1.6766 1.9562 0.8900 35 1 2.3545 -1.1653 4.3925 36 1 1.3676 -2.8534 -0.6918 37 1 4.6025 -4.1031 -2.1748 38 1 3.1542 -5.0736 -2.5340 39 1 3.2632 -4.3566 -4.9057 40 1 4.7112 -3.3863 -4.5457 41 1 6.6317 -7.0662 -6.7553 42 1 2.9345 -4.5345 0.8126 43 1 4.3596 -4.4392 -0.2495 44 1 5.1785 -4.7064 2.0088 45 1 5.4708 -3.0127 1.5465 46 1 4.5148 -2.9837 3.7729 47 1 3.2080 -4.0952 3.2889 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368138282.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:29 Heat of formation + Delta-G solvation = -13.788000 kcal Electronic energy + Delta-G solvation = -29186.299202 eV Core-core repulsion = 25304.232916 eV Total energy + Delta-G solvation = -3882.066286 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.79694 -37.49722 -36.84102 -36.18078 -35.72182 -34.04920 -33.89146 -31.57577 -30.78630 -29.52951 -28.09924 -27.50492 -26.07616 -23.43813 -23.14535 -22.14621 -21.32677 -19.91959 -19.52520 -18.90838 -17.93499 -17.38418 -16.82339 -16.08841 -15.72423 -15.36805 -14.92688 -14.80806 -14.58952 -14.36318 -14.32062 -13.91106 -13.76021 -13.68244 -13.21782 -13.12270 -12.86352 -12.55272 -12.43391 -12.24397 -12.04163 -11.97171 -11.92307 -11.80784 -11.59426 -11.57415 -11.42120 -11.31764 -11.29280 -11.07750 -10.74508 -10.52854 -10.51476 -10.23940 -9.95866 -9.62878 -9.43634 -9.28278 -8.71292 -8.34142 -6.21488 -4.23281 0.46381 1.70175 2.30727 2.61768 2.87044 3.22324 3.30165 3.33413 3.92496 4.11994 4.27450 4.31017 4.36635 4.59943 4.69188 4.72539 4.79266 4.83302 4.91239 4.92786 5.09570 5.15470 5.33135 5.33460 5.33840 5.39820 5.42685 5.47556 5.49894 5.52435 5.63424 5.68694 5.80255 5.87431 5.91641 5.95516 6.00359 6.09951 6.16712 6.21994 6.57946 6.72775 6.76072 6.86352 6.91909 7.48436 7.62168 8.30667 8.79240 9.37917 10.90720 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015906 B = 0.003590 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.947218 B = 7796.785342 C = 9055.173186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 C -0.160 4.160 4 N -0.344 5.344 5 N -0.294 5.294 6 C 0.047 3.953 7 C -0.231 4.231 8 C 0.081 3.919 9 C 0.215 3.785 10 H 0.111 0.889 11 N -1.124 6.124 12 S 2.580 3.420 13 O -0.961 6.961 14 O -0.963 6.963 15 C -0.580 4.580 16 C -0.007 4.007 17 C -0.520 4.520 18 H 0.079 0.921 19 C 0.073 3.927 20 N -0.894 5.894 21 Si 0.868 3.132 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.262 1.262 25 C -0.139 4.139 26 C -0.118 4.118 27 C -0.040 4.040 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.180 0.820 36 H 0.415 0.585 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.032 0.968 40 H 0.028 0.972 41 H 0.267 0.733 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.620 10.370 17.944 22.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.044 3.956 3 C -0.217 4.217 4 N -0.126 5.126 5 N -0.115 5.115 6 C -0.137 4.137 7 C -0.243 4.243 8 C -0.050 4.050 9 C 0.106 3.894 10 H 0.129 0.871 11 N -0.880 5.880 12 S 2.678 3.322 13 O -0.951 6.951 14 O -0.953 6.953 15 C -0.714 4.714 16 C -0.046 4.046 17 C -0.559 4.559 18 H 0.097 0.903 19 C -0.130 4.130 20 N -0.532 5.532 21 Si 0.694 3.306 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.187 1.187 25 C -0.179 4.179 26 C -0.157 4.157 27 C -0.078 4.078 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.125 0.875 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.197 0.803 36 H 0.249 0.751 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.454 12.136 16.933 22.483 hybrid contribution 0.260 -0.840 -0.357 0.949 sum -8.194 11.296 16.577 21.669 Atomic orbital electron populations 1.22158 0.93238 1.03084 1.03533 1.21539 0.95643 0.94388 0.83989 1.22112 1.02108 0.94252 1.03264 1.48519 1.38018 1.20577 1.05462 1.77449 1.24211 1.23525 0.86305 1.23525 0.97016 0.93376 0.99829 1.19915 1.10064 1.03300 0.91052 1.20852 0.97191 0.90612 0.96331 1.19516 0.89533 0.95300 0.85061 0.87135 1.56047 1.16484 1.90684 1.24797 1.05953 0.75961 0.78150 0.72151 1.93582 1.41688 1.87840 1.72002 1.93567 1.73273 1.44351 1.84105 1.30366 1.13960 1.17688 1.09381 1.19422 0.98190 1.00057 0.86939 1.20816 1.30378 1.08064 0.96665 0.90294 1.24974 0.94303 0.95015 0.98715 1.69874 1.33468 1.25879 1.23936 0.86949 0.79939 0.81222 0.82484 1.19632 1.20700 1.18669 1.22251 1.01078 0.95373 0.99191 1.21607 0.97876 1.02157 0.94030 1.20019 0.96328 0.93978 0.97484 0.91033 0.90435 0.92013 0.87546 0.91828 0.90519 0.91225 0.80278 0.75087 0.85402 0.85124 0.94945 0.95342 0.92319 0.90145 0.89584 0.90616 0.91283 0.91074 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.45 37.16 0.35 -1.27 16 2 C 0.15 1.69 3.44 -67.94 -0.23 1.45 16 3 C -0.16 -1.68 9.46 37.16 0.35 -1.33 16 4 N -0.34 -4.21 3.26 -50.69 -0.17 -4.38 16 5 N -0.29 -3.67 12.45 30.54 0.38 -3.29 16 6 C 0.05 0.50 12.00 -17.48 -0.21 0.29 16 7 C -0.23 -2.43 5.91 -105.05 -0.62 -3.05 16 8 C 0.08 0.94 6.33 -82.33 -0.52 0.42 16 9 C 0.21 2.38 2.76 -68.83 -0.19 2.19 16 10 H 0.11 1.26 7.49 -51.93 -0.39 0.87 16 11 N -1.12 -13.17 3.48 -5.67 -0.02 -13.19 16 12 S 2.58 40.34 5.24 -107.50 -0.56 39.78 16 13 O -0.96 -17.62 18.08 -57.54 -1.04 -18.66 16 14 O -0.96 -17.13 17.01 -57.54 -0.98 -18.11 16 15 C -0.58 -9.79 5.47 37.16 0.20 -9.58 16 16 C -0.01 -0.15 4.05 -27.88 -0.11 -0.26 16 17 C -0.52 -13.96 9.66 -34.44 -0.33 -14.30 16 18 H 0.08 2.22 7.99 -52.48 -0.42 1.80 16 19 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 20 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 21 Si 0.87 20.92 27.47 -169.99 -4.67 16.25 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 25 C -0.14 -1.32 5.44 -26.48 -0.14 -1.46 16 26 C -0.12 -0.98 5.90 -26.45 -0.16 -1.14 16 27 C -0.04 -0.32 6.28 -27.59 -0.17 -0.50 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.11 1.33 5.47 -51.93 -0.28 1.05 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.42 4.31 8.80 -34.47 -0.30 4.00 16 37 H 0.13 1.89 6.76 -51.93 -0.35 1.54 16 38 H 0.13 1.98 8.14 -51.92 -0.42 1.56 16 39 H 0.03 0.74 7.20 -51.93 -0.37 0.36 16 40 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.08 0.71 8.11 -51.93 -0.42 0.29 16 43 H 0.09 0.82 6.20 -51.93 -0.32 0.49 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 384.83 15.07 5.80 5.80 Total: -1.00 -33.93 384.83 -9.87 -43.79 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -7.50 Total: 4.19 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -1.89 Total: -26.59 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.97 Total: -46.44 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -2.02 Total: -36.77 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Atomic # 16 Polarization: 40.34 SS G_CDS: -0.56 Total: 39.78 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.93 -9.87 -43.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368138282.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.003 kcal (2) G-P(sol) polarization free energy of solvation -33.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds