Wall clock time and date at job start Sat Apr 11 2020 06:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.46909 * 2 1 4 4 N 1.46495 * 109.47234 * 120.00351 * 2 1 3 5 5 N 1.40297 * 126.09142 * 300.02173 * 4 2 1 6 6 C 1.31074 * 108.26839 * 180.02562 * 5 4 2 7 7 C 1.39289 * 108.08084 * 359.97438 * 6 5 4 8 8 C 1.34324 * 126.09031 * 120.02358 * 4 2 1 9 9 C 1.50822 * 128.03478 * 359.87122 * 8 4 2 10 10 H 1.08996 * 109.68781 * 76.83840 * 9 8 4 11 11 N 1.46500 * 109.68413 * 316.31765 * 9 8 4 12 12 S 1.65591 * 120.00325 * 145.00309 * 11 9 8 13 13 O 1.42098 * 104.28043 * 181.07218 * 12 11 9 14 14 O 1.42101 * 104.27584 * 308.92865 * 12 11 9 15 15 C 1.81397 * 104.45095 * 64.99637 * 12 11 9 16 16 C 1.53004 * 109.47144 * 180.02562 * 15 12 11 17 17 C 1.50693 * 109.47213 * 180.02562 * 16 15 12 18 18 H 1.08006 * 120.00422 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00174 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00374 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 120.00013 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.46771 * 90.00271 * 21 19 17 23 23 H 1.48494 * 109.47419 * 209.99883 * 21 19 17 24 24 H 1.48500 * 109.47183 * 330.00473 * 21 19 17 25 25 C 1.53370 * 108.38157 * 196.59504 * 9 8 4 26 26 C 1.53110 * 109.50679 * 310.05703 * 25 9 8 27 27 C 1.50838 * 127.90217 * 179.86657 * 7 6 5 28 28 H 1.09003 * 109.47296 * 299.99509 * 1 2 3 29 29 H 1.08998 * 109.47763 * 60.00044 * 1 2 3 30 30 H 1.09002 * 109.47356 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46843 * 240.00209 * 2 1 3 32 32 H 1.09005 * 109.46776 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47331 * 300.00228 * 3 2 1 34 34 H 1.08993 * 109.47191 * 60.00449 * 3 2 1 35 35 H 1.08001 * 125.95617 * 179.97438 * 6 5 4 36 36 H 0.97002 * 119.99353 * 324.99773 * 11 9 8 37 37 H 1.08994 * 109.47578 * 300.00087 * 15 12 11 38 38 H 1.09003 * 109.46745 * 60.00633 * 15 12 11 39 39 H 1.09003 * 109.47503 * 300.00605 * 16 15 12 40 40 H 1.08999 * 109.47010 * 59.99936 * 16 15 12 41 41 H 0.97002 * 120.00169 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.46482 * 70.06395 * 25 9 8 43 43 H 1.09000 * 109.46886 * 190.05270 * 25 9 8 44 44 H 1.08998 * 109.46677 * 190.28849 * 26 25 9 45 45 H 1.09005 * 109.46515 * 310.26575 * 26 25 9 46 46 H 1.08998 * 109.68267 * 316.35732 * 27 7 6 47 47 H 1.08999 * 109.68302 * 76.90958 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 7 1.7590 -0.3248 2.5254 6 6 2.3647 -1.1801 3.3126 7 6 3.0236 -2.1114 2.5135 8 6 2.7941 -1.7870 1.2154 9 6 3.3388 -2.5608 0.0409 10 1 4.1818 -2.0236 -0.3936 11 7 2.2896 -2.7308 -0.9673 12 16 2.6775 -2.7140 -2.5771 13 8 1.4312 -2.8776 -3.2397 14 8 3.4440 -1.5287 -2.7404 15 6 3.7183 -4.1818 -2.8072 16 6 4.1471 -4.2782 -4.2728 17 6 5.0112 -5.4978 -4.4641 18 1 5.2322 -6.1404 -3.6245 19 6 5.5199 -5.7936 -5.7110 20 7 6.2736 -6.8583 -5.8782 21 14 5.1373 -4.6829 -7.1634 22 1 6.1751 -3.6254 -7.2646 23 1 5.1263 -5.4866 -8.4119 24 1 3.8066 -4.0534 -6.9681 25 6 3.8029 -3.9347 0.5402 26 6 4.7040 -3.7559 1.7651 27 6 3.8590 -3.2866 2.9567 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4424 -0.0005 33 1 1.6765 1.9563 -0.8899 34 1 1.6766 1.9562 0.8900 35 1 2.3545 -1.1653 4.3925 36 1 1.3676 -2.8534 -0.6918 37 1 4.6025 -4.1031 -2.1748 38 1 3.1542 -5.0736 -2.5340 39 1 3.2632 -4.3566 -4.9057 40 1 4.7112 -3.3863 -4.5457 41 1 6.6317 -7.0662 -6.7553 42 1 2.9345 -4.5345 0.8126 43 1 4.3596 -4.4392 -0.2495 44 1 5.1785 -4.7064 2.0088 45 1 5.4708 -3.0127 1.5465 46 1 4.5148 -2.9837 3.7729 47 1 3.2080 -4.0952 3.2889 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368138282.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:28 Heat of formation + Delta-G solvation = -37.043669 kcal Electronic energy + Delta-G solvation = -29187.307643 eV Core-core repulsion = 25304.232916 eV Total energy + Delta-G solvation = -3883.074727 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.62020 -38.46489 -38.06749 -37.21161 -36.91868 -35.89713 -34.73402 -33.48326 -31.64806 -30.32638 -28.91638 -28.30827 -27.89386 -24.27134 -23.96388 -23.29158 -22.70475 -20.77461 -20.63510 -19.87989 -19.41287 -18.69120 -18.09730 -17.16928 -17.07054 -16.47225 -16.32852 -15.86696 -15.66775 -15.43174 -15.22729 -15.05549 -14.83630 -14.72220 -14.44813 -14.02648 -13.97985 -13.78347 -13.37806 -13.29597 -13.22682 -13.20989 -13.11584 -13.05892 -12.97596 -12.93137 -12.43832 -12.40352 -12.27159 -12.21480 -11.98546 -11.76355 -11.70392 -11.46347 -11.30891 -11.29777 -10.82570 -10.66999 -10.22861 -9.14649 -8.34554 -6.39841 -0.83287 0.83264 1.32698 1.35357 1.44137 1.47680 1.64194 1.92134 2.30627 2.63716 2.99682 3.10596 3.29679 3.44614 3.79204 3.82073 3.86578 3.92865 3.97322 4.03157 4.09941 4.11505 4.21569 4.44015 4.55223 4.57324 4.59283 4.61762 4.68426 4.69742 4.72198 4.84734 4.99510 5.06477 5.07568 5.09942 5.11115 5.13451 5.27883 5.31918 5.39849 5.48752 5.51982 5.82159 5.85937 6.08450 6.18758 6.66755 6.79167 7.24558 8.80702 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015906 B = 0.003590 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.947218 B = 7796.785342 C = 9055.173186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 C -0.156 4.156 4 N -0.353 5.353 5 N -0.318 5.318 6 C 0.045 3.955 7 C -0.229 4.229 8 C 0.063 3.937 9 C 0.212 3.788 10 H 0.106 0.894 11 N -1.108 6.108 12 S 2.612 3.388 13 O -0.986 6.986 14 O -0.983 6.983 15 C -0.586 4.586 16 C -0.017 4.017 17 C -0.524 4.524 18 H 0.054 0.946 19 C 0.015 3.985 20 N -0.939 5.939 21 Si 0.920 3.080 22 H -0.261 1.261 23 H -0.276 1.276 24 H -0.250 1.250 25 C -0.140 4.140 26 C -0.118 4.118 27 C -0.036 4.036 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.208 0.792 36 H 0.424 0.576 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.031 0.969 40 H 0.032 0.968 41 H 0.269 0.731 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.308 11.150 19.182 23.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.036 3.964 3 C -0.214 4.214 4 N -0.135 5.135 5 N -0.140 5.140 6 C -0.139 4.139 7 C -0.242 4.242 8 C -0.067 4.067 9 C 0.104 3.896 10 H 0.123 0.877 11 N -0.867 5.867 12 S 2.708 3.292 13 O -0.976 6.976 14 O -0.973 6.973 15 C -0.718 4.718 16 C -0.056 4.056 17 C -0.563 4.563 18 H 0.072 0.928 19 C -0.184 4.184 20 N -0.579 5.579 21 Si 0.743 3.257 22 H -0.186 1.186 23 H -0.201 1.201 24 H -0.173 1.173 25 C -0.180 4.180 26 C -0.156 4.156 27 C -0.074 4.074 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.225 0.775 36 H 0.260 0.740 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.049 0.951 40 H 0.050 0.950 41 H 0.078 0.922 42 H 0.107 0.893 43 H 0.103 0.897 44 H 0.108 0.892 45 H 0.084 0.916 46 H 0.105 0.895 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.147 12.912 18.173 24.097 hybrid contribution 0.482 -1.096 -0.590 1.335 sum -8.664 11.816 17.583 22.887 Atomic orbital electron populations 1.22140 0.92226 1.03138 1.04114 1.21619 0.96549 0.94610 0.83612 1.22094 1.01316 0.94034 1.03963 1.48599 1.38465 1.20887 1.05508 1.77414 1.25298 1.24608 0.86648 1.24062 0.96110 0.92669 1.01105 1.20266 1.09655 1.03712 0.90546 1.21036 0.97843 0.90903 0.96933 1.19665 0.88929 0.96339 0.84675 0.87669 1.55614 1.17289 1.90307 1.23460 1.04807 0.74767 0.76977 0.72613 1.93544 1.42655 1.87931 1.73476 1.93542 1.73779 1.45000 1.84937 1.30369 1.15619 1.19694 1.06156 1.19381 0.97390 0.98114 0.90761 1.21154 1.30284 1.08987 0.95838 0.92770 1.25825 0.94394 0.96401 1.01739 1.70000 1.35223 1.27889 1.24761 0.86096 0.80561 0.79744 0.79277 1.18558 1.20147 1.17317 1.22287 1.01654 0.94247 0.99779 1.21633 0.97615 1.02861 0.93530 1.20086 0.96342 0.93308 0.97706 0.91185 0.89093 0.92203 0.88668 0.92974 0.89103 0.91230 0.77509 0.73979 0.83550 0.83563 0.95102 0.94981 0.92187 0.89338 0.89705 0.89177 0.91625 0.89528 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.45 71.98 0.68 -2.32 16 2 C 0.14 3.08 3.44 44.99 0.15 3.23 16 3 C -0.16 -3.20 9.46 71.98 0.68 -2.52 16 4 N -0.35 -8.27 3.26 -314.29 -1.03 -9.30 16 5 N -0.32 -7.55 12.45 -57.28 -0.71 -8.27 16 6 C 0.04 0.85 12.00 85.06 1.02 1.87 16 7 C -0.23 -4.33 5.91 -20.14 -0.12 -4.45 16 8 C 0.06 1.39 6.33 41.64 0.26 1.65 16 9 C 0.21 4.41 2.76 44.41 0.12 4.54 16 10 H 0.11 2.30 7.49 -2.39 -0.02 2.28 16 11 N -1.11 -24.46 3.48 -171.84 -0.60 -25.05 16 12 S 2.61 78.52 5.24 -56.49 -0.30 78.22 16 13 O -0.99 -34.97 18.08 -127.65 -2.31 -37.28 16 14 O -0.98 -33.96 17.01 -127.65 -2.17 -36.13 16 15 C -0.59 -19.09 5.47 71.98 0.39 -18.69 16 16 C -0.02 -0.77 4.05 29.85 0.12 -0.65 16 17 C -0.52 -28.28 9.66 25.60 0.25 -28.03 16 18 H 0.05 3.10 7.99 -2.91 -0.02 3.08 16 19 C 0.02 0.85 5.47 84.65 0.46 1.31 16 20 N -0.94 -56.33 13.96 21.45 0.30 -56.03 16 21 Si 0.92 42.62 27.47 68.60 1.88 44.50 16 22 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 25 C -0.14 -2.37 5.44 30.76 0.17 -2.21 16 26 C -0.12 -1.68 5.90 30.78 0.18 -1.50 16 27 C -0.04 -0.48 6.28 30.04 0.19 -0.29 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.10 2.31 5.47 -2.39 -0.01 2.30 16 32 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.21 2.50 8.06 -2.91 -0.02 2.47 16 36 H 0.42 8.19 8.80 -96.75 -0.85 7.34 16 37 H 0.15 4.15 6.76 -2.39 -0.02 4.13 16 38 H 0.15 4.25 8.14 -2.39 -0.02 4.23 16 39 H 0.03 1.37 7.20 -2.39 -0.02 1.35 16 40 H 0.03 1.39 7.57 -2.39 -0.02 1.37 16 41 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 42 H 0.09 1.36 8.11 -2.39 -0.02 1.34 16 43 H 0.08 1.46 6.20 -2.39 -0.01 1.44 16 44 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.06 0.98 8.11 -2.38 -0.02 0.96 16 46 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -72.67 384.83 -0.30 -72.96 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.07 Total: 24.43 kcal Atomic # 6 Polarization: -52.63 SS G_CDS: 4.57 Total: -48.06 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -2.04 Total: -98.64 kcal Atomic # 8 Polarization: -68.93 SS G_CDS: -4.48 Total: -73.41 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.88 Total: 44.50 kcal Atomic # 16 Polarization: 78.52 SS G_CDS: -0.30 Total: 78.22 kcal Total: -72.67 -0.30 -72.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368138282.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.921 kcal (2) G-P(sol) polarization free energy of solvation -72.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds