Wall clock time and date at job start Sat Apr 11 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47411 * 2 1 4 4 N 1.46498 * 109.46851 * 120.00370 * 2 1 3 5 5 N 1.40300 * 126.08958 * 299.97005 * 4 2 1 6 6 C 1.31066 * 108.26830 * 179.97438 * 5 4 2 7 7 C 1.39301 * 108.08269 * 0.02562 * 6 5 4 8 8 C 1.34321 * 126.09348 * 120.00106 * 4 2 1 9 9 C 1.50825 * 128.03509 * 0.10611 * 8 4 2 10 10 H 1.09004 * 109.68509 * 283.19061 * 9 8 4 11 11 N 1.46498 * 109.68040 * 43.70763 * 9 8 4 12 12 S 1.65606 * 119.99850 * 214.99939 * 11 9 8 13 13 O 1.42094 * 104.27817 * 308.92879 * 12 11 9 14 14 O 1.42106 * 104.27580 * 181.07110 * 12 11 9 15 15 C 1.81396 * 104.45103 * 65.00095 * 12 11 9 16 16 C 1.52997 * 109.47360 * 179.97438 * 15 12 11 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 12 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47432 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46890 * 120.00210 * 21 19 17 24 24 H 1.48501 * 109.47062 * 240.00257 * 21 19 17 25 25 C 1.53362 * 108.38275 * 163.42822 * 9 8 4 26 26 C 1.53125 * 109.49769 * 49.95128 * 25 9 8 27 27 C 1.50833 * 127.89906 * 180.15378 * 7 6 5 28 28 H 1.09000 * 109.46835 * 300.00405 * 1 2 3 29 29 H 1.08996 * 109.46938 * 59.99781 * 1 2 3 30 30 H 1.08997 * 109.47322 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46835 * 239.99594 * 2 1 3 32 32 H 1.09006 * 109.47021 * 59.99953 * 3 2 1 33 33 H 1.08989 * 109.47180 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.46910 * 300.00133 * 3 2 1 35 35 H 1.07998 * 125.96366 * 180.02562 * 6 5 4 36 36 H 0.96995 * 119.99965 * 35.00115 * 11 9 8 37 37 H 1.09002 * 109.47134 * 59.99751 * 15 12 11 38 38 H 1.08998 * 109.46953 * 300.00489 * 15 12 11 39 39 H 1.09002 * 109.47153 * 59.99820 * 16 15 12 40 40 H 1.09001 * 109.46832 * 300.00011 * 16 15 12 41 41 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.46401 * 169.94650 * 25 9 8 43 43 H 1.08999 * 109.46698 * 289.92790 * 25 9 8 44 44 H 1.09006 * 109.46521 * 169.70211 * 26 25 9 45 45 H 1.09001 * 109.48063 * 49.71740 * 26 25 9 46 46 H 1.08998 * 109.68505 * 283.07077 * 27 7 6 47 47 H 1.08993 * 109.68486 * 43.59970 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 7 1.7598 -0.3242 2.5255 6 6 2.3641 -1.1803 3.3127 7 6 3.0225 -2.1122 2.5136 8 6 2.7937 -1.7873 1.2155 9 6 3.3420 -2.5587 0.0411 10 1 2.5545 -3.1743 -0.3937 11 7 3.8522 -1.6261 -0.9669 12 16 3.7073 -1.9862 -2.5768 13 8 4.2355 -3.3003 -2.6909 14 8 4.3229 -0.8892 -3.2380 15 6 1.9190 -1.9903 -2.8805 16 6 1.6523 -2.3139 -4.3519 17 6 0.1665 -2.3180 -4.6041 18 1 -0.5190 -2.1101 -3.7958 19 6 -0.3176 -2.5860 -5.8670 20 7 0.5171 -2.8387 -6.8513 21 14 -2.1592 -2.5904 -6.1796 22 1 -2.8765 -2.2785 -4.9173 23 1 -2.4900 -1.5658 -7.2025 24 1 -2.5752 -3.9297 -6.6679 25 6 4.4824 -3.4542 0.5406 26 6 4.0129 -4.2443 1.7653 27 6 3.8514 -3.2918 2.9570 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 2.3536 -1.1659 4.3925 36 1 4.2750 -0.7977 -0.6913 37 1 1.5081 -1.0087 -2.6445 38 1 1.4453 -2.7434 -2.2508 39 1 2.0633 -3.2954 -4.5884 40 1 2.1260 -1.5604 -4.9812 41 1 0.1765 -3.0276 -7.7396 42 1 4.7726 -4.1471 -0.2492 43 1 5.3374 -2.8355 0.8131 44 1 4.7507 -5.0088 2.0091 45 1 3.0566 -4.7194 1.5467 46 1 4.8310 -2.9480 3.2892 47 1 3.3473 -3.8086 3.7735 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368138283.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:32 Heat of formation + Delta-G solvation = -39.704583 kcal Electronic energy + Delta-G solvation = -29494.179099 eV Core-core repulsion = 25610.988986 eV Total energy + Delta-G solvation = -3883.190113 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.61686 -38.47992 -37.98894 -37.10660 -37.03521 -35.91364 -34.72734 -33.17378 -31.64281 -30.30211 -28.90718 -28.27421 -27.64855 -24.24439 -23.97106 -23.68941 -22.81261 -20.78184 -20.58288 -19.86372 -19.19873 -18.51063 -17.98539 -17.17902 -17.09817 -16.53941 -16.37908 -15.83929 -15.66579 -15.35866 -15.30859 -14.94632 -14.70480 -14.50437 -14.45388 -13.99967 -13.93985 -13.76543 -13.35382 -13.27321 -13.19994 -13.16789 -13.08410 -13.00472 -12.90953 -12.81637 -12.42427 -12.37218 -12.36383 -12.15452 -12.12126 -11.80659 -11.70811 -11.47473 -11.29370 -11.23791 -10.65201 -10.62952 -10.22696 -9.13820 -8.26043 -6.39097 -0.84270 0.84064 1.40813 1.41578 1.48299 1.53855 1.67355 1.93738 2.37310 2.66690 3.08372 3.14122 3.29486 3.41976 3.73835 3.82757 3.88187 3.90729 3.94589 4.04394 4.06010 4.15639 4.21527 4.45765 4.59086 4.62032 4.63394 4.70640 4.72006 4.72316 4.73929 4.88246 5.03466 5.09544 5.13477 5.15311 5.25199 5.25606 5.30264 5.31960 5.40341 5.51463 5.68554 5.83246 5.86003 6.05608 6.09366 6.74430 6.80355 7.31197 8.86349 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012300 B = 0.003975 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.947899 B = 7042.114164 C = 7905.123691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.138 3.862 3 C -0.161 4.161 4 N -0.351 5.351 5 N -0.317 5.317 6 C 0.045 3.955 7 C -0.229 4.229 8 C 0.061 3.939 9 C 0.216 3.784 10 H 0.104 0.896 11 N -1.108 6.108 12 S 2.612 3.388 13 O -0.981 6.981 14 O -0.989 6.989 15 C -0.595 4.595 16 C 0.025 3.975 17 C -0.533 4.533 18 H 0.076 0.924 19 C 0.000 4.000 20 N -0.933 5.933 21 Si 0.968 3.032 22 H -0.256 1.256 23 H -0.279 1.279 24 H -0.280 1.280 25 C -0.130 4.130 26 C -0.116 4.116 27 C -0.036 4.036 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.208 0.792 36 H 0.424 0.576 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.010 0.990 40 H 0.009 0.991 41 H 0.267 0.733 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.421 2.183 22.145 22.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 C -0.219 4.219 4 N -0.133 5.133 5 N -0.138 5.138 6 C -0.139 4.139 7 C -0.241 4.241 8 C -0.070 4.070 9 C 0.107 3.893 10 H 0.122 0.878 11 N -0.867 5.867 12 S 2.708 3.292 13 O -0.971 6.971 14 O -0.980 6.980 15 C -0.727 4.727 16 C -0.014 4.014 17 C -0.572 4.572 18 H 0.095 0.905 19 C -0.199 4.199 20 N -0.572 5.572 21 Si 0.792 3.208 22 H -0.180 1.180 23 H -0.205 1.205 24 H -0.206 1.206 25 C -0.170 4.170 26 C -0.155 4.155 27 C -0.074 4.074 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.225 0.775 36 H 0.260 0.740 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.028 0.972 40 H 0.027 0.973 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.109 0.891 45 H 0.084 0.916 46 H 0.098 0.902 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.304 2.963 21.130 21.766 hybrid contribution -0.759 -0.180 -0.491 0.922 sum 3.545 2.783 20.639 21.126 Atomic orbital electron populations 1.22142 0.92726 1.02996 1.04017 1.21682 0.96275 0.94799 0.83571 1.22160 1.01776 0.93764 1.04195 1.48594 1.38090 1.21111 1.05509 1.77428 1.25026 1.24693 0.86686 1.24057 0.96100 0.92653 1.01101 1.20269 1.09524 1.03768 0.90571 1.21068 0.97403 0.91517 0.96993 1.19617 0.96607 0.88371 0.84672 0.87829 1.55684 1.75147 1.32655 1.23228 1.04847 0.78332 0.73404 0.72574 1.93527 1.77467 1.40840 1.85272 1.93530 1.75467 1.55240 1.73716 1.30485 1.22765 1.11956 1.07449 1.18790 0.98882 0.96211 0.87521 1.21494 0.91713 1.48367 0.95658 0.90542 1.26024 1.03275 0.94539 0.96016 1.70094 1.36782 1.48347 1.02010 0.85353 0.78935 0.77778 0.78744 1.17959 1.20509 1.20561 1.22108 0.97051 0.98448 0.99375 1.21641 1.02466 0.97993 0.93360 1.20087 0.98427 0.91256 0.97668 0.91259 0.89263 0.92564 0.88484 0.91240 0.92001 0.89074 0.77513 0.74042 0.83901 0.84019 0.97211 0.97291 0.92439 0.90391 0.90182 0.89086 0.91582 0.90202 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 9.46 71.98 0.68 -2.82 16 2 C 0.14 3.08 3.44 44.99 0.15 3.23 16 3 C -0.16 -3.20 9.46 71.98 0.68 -2.52 16 4 N -0.35 -8.21 3.26 -314.28 -1.03 -9.24 16 5 N -0.32 -7.62 12.45 -57.28 -0.71 -8.34 16 6 C 0.04 0.87 12.00 85.06 1.02 1.89 16 7 C -0.23 -4.37 5.91 -20.14 -0.12 -4.49 16 8 C 0.06 1.33 6.33 41.64 0.26 1.60 16 9 C 0.22 4.75 2.63 44.41 0.12 4.87 16 10 H 0.10 2.23 7.18 -2.38 -0.02 2.21 16 11 N -1.11 -26.73 3.52 -171.84 -0.60 -27.33 16 12 S 2.61 87.67 5.32 -56.49 -0.30 87.37 16 13 O -0.98 -38.11 17.48 -127.65 -2.23 -40.34 16 14 O -0.99 -39.16 18.08 -127.65 -2.31 -41.46 16 15 C -0.59 -20.92 5.03 71.98 0.36 -20.56 16 16 C 0.02 1.23 4.98 29.85 0.15 1.38 16 17 C -0.53 -28.16 9.11 25.60 0.23 -27.93 16 18 H 0.08 3.71 7.74 -2.91 -0.02 3.69 16 19 C 0.00 0.01 5.46 84.66 0.46 0.47 16 20 N -0.93 -55.18 13.29 21.45 0.28 -54.90 16 21 Si 0.97 42.10 29.54 68.60 2.03 44.12 16 22 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 25 C -0.13 -2.52 5.52 30.76 0.17 -2.35 16 26 C -0.12 -1.70 5.90 30.78 0.18 -1.52 16 27 C -0.04 -0.48 6.28 30.03 0.19 -0.30 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.10 2.18 3.37 -2.39 -0.01 2.17 16 32 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.21 2.53 8.06 -2.91 -0.02 2.51 16 36 H 0.42 8.97 8.80 -96.75 -0.85 8.12 16 37 H 0.14 4.33 6.66 -2.39 -0.02 4.32 16 38 H 0.14 4.31 7.46 -2.39 -0.02 4.29 16 39 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 42 H 0.08 1.72 7.80 -2.39 -0.02 1.71 16 43 H 0.08 1.45 8.11 -2.39 -0.02 1.43 16 44 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 45 H 0.07 1.00 8.11 -2.39 -0.02 0.98 16 46 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 47 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -73.34 386.92 -0.20 -73.55 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.12 Total: 25.60 kcal Atomic # 6 Polarization: -53.58 SS G_CDS: 4.54 Total: -49.04 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -2.06 Total: -99.80 kcal Atomic # 8 Polarization: -77.27 SS G_CDS: -4.54 Total: -81.81 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: 87.67 SS G_CDS: -0.30 Total: 87.37 kcal Total: -73.34 -0.20 -73.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368138283.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.841 kcal (2) G-P(sol) polarization free energy of solvation -73.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds