Wall clock time and date at job start Sat Apr 11 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46502 * 120.00100 * 2 1 4 4 C 1.50705 * 109.47217 * 275.00363 * 3 2 1 5 5 H 1.08006 * 119.99896 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99853 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99332 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 120.00295 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.46759 * 90.00012 * 8 6 4 10 10 H 1.48495 * 109.47220 * 209.99911 * 8 6 4 11 11 H 1.48494 * 109.47032 * 330.00180 * 8 6 4 12 12 S 1.65597 * 120.00340 * 180.02562 * 2 1 3 13 13 O 1.42098 * 106.40674 * 156.45436 * 12 2 1 14 14 O 1.42107 * 106.40001 * 23.53487 * 12 2 1 15 15 N 1.65600 * 107.21730 * 269.99863 * 12 2 1 16 16 C 1.46507 * 120.00145 * 64.99684 * 15 12 2 17 17 C 1.50700 * 109.47085 * 164.78981 * 16 15 12 18 18 C 1.38227 * 120.41863 * 266.09977 * 17 16 15 19 19 N 1.31860 * 120.75790 * 179.73264 * 18 17 16 20 20 C 1.31882 * 121.72815 * 0.58242 * 19 18 17 21 21 C 1.38183 * 120.76393 * 359.68411 * 20 19 18 22 22 C 1.38623 * 120.41580 * 86.38298 * 17 16 15 23 23 C 1.50698 * 120.79304 * 359.97438 * 22 17 16 24 24 C 1.53005 * 109.47220 * 187.50121 * 23 22 17 25 25 C 1.52999 * 109.47398 * 307.50376 * 23 22 17 26 26 C 1.53001 * 109.46764 * 67.50754 * 23 22 17 27 27 H 1.09001 * 109.47249 * 270.00008 * 1 2 3 28 28 H 1.09002 * 109.47335 * 29.99796 * 1 2 3 29 29 H 1.09002 * 109.47545 * 149.99823 * 1 2 3 30 30 H 1.08999 * 109.47349 * 35.00265 * 3 2 1 31 31 H 1.08993 * 109.47501 * 155.00338 * 3 2 1 32 32 H 0.97006 * 119.98996 * 179.97438 * 7 6 4 33 33 H 0.97005 * 120.00226 * 244.99417 * 15 12 2 34 34 H 1.08998 * 109.46843 * 284.79224 * 16 15 12 35 35 H 1.09001 * 109.47073 * 44.78996 * 16 15 12 36 36 H 1.08000 * 119.62020 * 0.02615 * 18 17 16 37 37 H 1.08000 * 119.61655 * 179.70759 * 20 19 18 38 38 H 1.07998 * 120.41670 * 180.02562 * 21 20 19 39 39 H 1.08995 * 109.46589 * 60.00466 * 24 23 22 40 40 H 1.08998 * 109.47119 * 180.02562 * 24 23 22 41 41 H 1.09001 * 109.46993 * 300.00327 * 24 23 22 42 42 H 1.09001 * 109.46664 * 75.94211 * 25 23 22 43 43 H 1.09000 * 109.46783 * 195.93831 * 25 23 22 44 44 H 1.09001 * 109.47233 * 315.94458 * 25 23 22 45 45 H 1.08994 * 109.47661 * 75.49904 * 26 23 22 46 46 H 1.09001 * 109.47140 * 195.50190 * 26 23 22 47 47 H 1.09007 * 109.47110 * 315.49312 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3413 1.7658 -1.4154 5 1 1.9288 1.1935 -2.2333 6 6 3.0006 2.9504 -1.6664 7 7 3.1265 3.3838 -2.9018 8 14 3.7148 3.9397 -0.2520 9 1 5.1117 3.5040 0.0010 10 1 3.7020 5.3830 -0.6013 11 1 2.8985 3.7186 0.9686 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1565 -0.5451 14 8 1.4113 -2.4063 -0.5454 15 7 2.5381 -1.8592 1.5810 16 6 1.3947 -2.1788 2.4393 17 6 1.8797 -2.8804 3.6817 18 6 1.9114 -4.2611 3.7386 19 7 2.3395 -4.8818 4.8203 20 6 2.7409 -4.2188 5.8874 21 6 2.7322 -2.8371 5.9057 22 6 2.2943 -2.1491 4.7841 23 6 2.2696 -0.6425 4.7641 24 6 2.9489 -0.1045 6.0252 25 6 3.0153 -0.1365 3.5277 26 6 0.8194 -0.1568 4.7194 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5139 30 1 1.6502 2.0043 0.5895 31 1 3.1857 1.1177 0.4342 32 1 3.5900 4.2175 -3.0782 33 1 3.4389 -1.8968 1.9391 34 1 0.8816 -1.2585 2.7185 35 1 0.7062 -2.8294 1.9000 36 1 1.5863 -4.8381 2.8855 37 1 3.0805 -4.7620 6.7568 38 1 3.0625 -2.2998 6.7824 39 1 3.9819 -0.4505 6.0570 40 1 2.9306 0.9852 6.0109 41 1 2.4175 -0.4651 6.9060 42 1 2.3901 -0.2727 2.6453 43 1 3.2454 0.9219 3.6502 44 1 3.9416 -0.6982 3.4069 45 1 0.3668 -0.2727 5.7042 46 1 0.7968 0.8940 4.4306 47 1 0.2613 -0.7457 3.9914 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416581199.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:51 Heat of formation + Delta-G solvation = -24.116604 kcal Electronic energy + Delta-G solvation = -29734.223150 eV Core-core repulsion = 25851.708983 eV Total energy + Delta-G solvation = -3882.514168 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.10728 -37.64776 -36.74948 -35.72165 -35.41786 -35.27704 -32.41720 -31.52100 -31.40325 -28.44994 -27.88646 -27.38348 -25.99702 -25.20464 -23.88954 -22.21624 -21.94424 -19.89130 -19.13417 -17.57311 -17.14084 -16.98984 -16.75881 -16.53607 -16.05296 -15.26672 -14.94992 -14.70758 -14.57062 -14.31420 -14.25087 -13.89755 -13.64460 -13.40207 -13.23517 -13.02376 -12.58907 -12.56622 -12.40795 -12.27570 -12.12454 -11.87581 -11.79804 -11.58957 -11.44671 -11.38594 -11.27239 -11.25736 -11.22567 -10.72540 -10.67483 -10.49588 -10.28325 -9.70515 -9.68387 -9.58753 -9.30040 -9.27576 -8.62624 -8.19051 -6.11244 -4.10790 0.72896 1.01087 1.17919 3.23096 3.27663 3.29691 3.35733 3.62504 4.01311 4.13608 4.24222 4.34679 4.36621 4.55860 4.62930 4.73446 4.89088 4.90346 4.92147 5.12493 5.14872 5.19707 5.36233 5.43557 5.47459 5.48611 5.50254 5.57081 5.64584 5.72100 5.75259 5.77852 5.82145 5.86794 6.00174 6.09535 6.14655 6.17310 6.29746 6.40508 6.46761 6.66078 6.92070 7.06271 7.34850 7.54305 7.74864 8.45542 8.93919 9.47510 11.02374 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014449 B = 0.004242 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.432788 B = 6598.985875 C = 7722.612567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.989 5.989 3 C 0.229 3.771 4 C -0.533 4.533 5 H 0.078 0.922 6 C 0.073 3.927 7 N -0.894 5.894 8 Si 0.871 3.129 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.264 1.264 12 S 2.779 3.221 13 O -0.958 6.958 14 O -0.991 6.991 15 N -1.131 6.131 16 C 0.152 3.848 17 C -0.144 4.144 18 C 0.118 3.882 19 N -0.490 5.490 20 C 0.101 3.899 21 C -0.177 4.177 22 C -0.008 4.008 23 C -0.032 4.032 24 C -0.143 4.143 25 C -0.168 4.168 26 C -0.149 4.149 27 H 0.039 0.961 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.029 0.971 32 H 0.265 0.735 33 H 0.415 0.585 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.138 0.862 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.068 0.932 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.227 -9.415 21.048 23.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.831 5.831 3 C 0.105 3.895 4 C -0.572 4.572 5 H 0.096 0.904 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.698 3.302 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.189 1.189 12 S 2.786 3.214 13 O -0.942 6.942 14 O -0.974 6.974 15 N -0.891 5.891 16 C 0.026 3.974 17 C -0.148 4.148 18 C -0.039 4.039 19 N -0.199 5.199 20 C -0.056 4.056 21 C -0.197 4.197 22 C -0.017 4.017 23 C -0.032 4.032 24 C -0.201 4.201 25 C -0.225 4.225 26 C -0.205 4.205 27 H 0.058 0.942 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.250 0.750 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.175 0.825 37 H 0.171 0.829 38 H 0.156 0.844 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.109 0.891 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.055 -10.660 20.088 23.100 hybrid contribution 0.814 1.753 1.160 2.255 sum -3.240 -8.907 21.248 23.266 Atomic orbital electron populations 1.21427 0.79662 1.04153 1.00208 1.57370 1.14475 1.22482 1.88820 1.19433 0.90790 0.80631 0.98617 1.21383 1.36894 1.07055 0.91892 0.90405 1.24872 0.95367 0.97209 0.95498 1.69902 1.42475 1.21996 1.18859 0.86935 0.80410 0.79784 0.83074 1.19817 1.20982 1.18904 1.02096 0.73519 0.73053 0.72729 1.93662 1.40554 1.84749 1.75235 1.93536 1.67529 1.59803 1.76561 1.56672 1.14593 1.85694 1.32135 1.20384 0.88282 1.00070 0.88651 1.20694 1.02989 0.95042 0.96051 1.22789 0.94080 0.91190 0.95850 1.67731 1.10750 1.41101 1.00294 1.22788 0.94956 0.91574 0.96234 1.22160 1.02556 0.95576 0.99415 1.20267 0.93138 0.95847 0.92425 1.19593 0.97031 0.89331 0.97265 1.21989 1.00401 1.01461 0.96207 1.22668 1.00742 1.01350 0.97780 1.22112 0.94071 1.02115 1.02248 0.94230 0.89996 0.91173 0.94827 0.95313 0.92508 0.75018 0.89455 0.89459 0.82457 0.82898 0.84427 0.92253 0.91821 0.92364 0.89150 0.91837 0.92556 0.92373 0.91309 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.40 10.68 59.84 0.64 2.04 16 2 N -0.99 -18.52 3.23 -123.05 -0.40 -18.92 16 3 C 0.23 5.07 4.15 -5.19 -0.02 5.05 16 4 C -0.53 -14.79 9.94 -34.44 -0.34 -15.13 16 5 H 0.08 2.39 8.06 -52.48 -0.42 1.97 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 7 N -0.89 -27.14 13.96 55.43 0.77 -26.37 16 8 Si 0.87 20.50 27.47 -169.99 -4.67 15.83 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 12 S 2.78 51.09 6.10 -107.50 -0.66 50.43 16 13 O -0.96 -21.88 17.11 -57.17 -0.98 -22.86 16 14 O -0.99 -19.46 16.21 -57.17 -0.93 -20.39 16 15 N -1.13 -15.00 3.76 -11.65 -0.04 -15.05 16 16 C 0.15 1.65 5.09 -5.19 -0.03 1.63 16 17 C -0.14 -1.49 5.02 -104.48 -0.52 -2.02 16 18 C 0.12 1.28 10.85 -17.54 -0.19 1.09 16 19 N -0.49 -5.54 10.36 -13.25 -0.14 -5.67 16 20 C 0.10 0.93 11.18 -17.55 -0.20 0.73 16 21 C -0.18 -1.51 9.08 -39.44 -0.36 -1.87 16 22 C -0.01 -0.08 4.69 -104.32 -0.49 -0.57 16 23 C -0.03 -0.29 0.75 -155.66 -0.12 -0.41 16 24 C -0.14 -1.08 7.07 37.16 0.26 -0.82 16 25 C -0.17 -1.84 6.85 37.16 0.25 -1.58 16 26 C -0.15 -1.25 8.20 37.16 0.30 -0.94 16 27 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 29 H 0.07 1.04 7.02 -51.93 -0.36 0.68 16 30 H 0.03 0.70 7.17 -51.93 -0.37 0.33 16 31 H 0.03 0.64 7.04 -51.93 -0.37 0.27 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.41 5.10 6.91 -34.47 -0.24 4.86 16 34 H 0.09 0.86 3.67 -51.93 -0.19 0.67 16 35 H 0.09 0.91 7.67 -51.93 -0.40 0.51 16 36 H 0.16 1.51 8.06 -52.49 -0.42 1.08 16 37 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.14 0.88 6.09 -52.49 -0.32 0.57 16 39 H 0.06 0.44 7.90 -51.93 -0.41 0.03 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.37 7.22 -51.93 -0.37 0.00 16 42 H 0.09 1.07 3.91 -51.93 -0.20 0.87 16 43 H 0.06 0.70 8.04 -51.93 -0.42 0.28 16 44 H 0.06 0.61 7.08 -51.93 -0.37 0.24 16 45 H 0.06 0.43 8.05 -51.93 -0.42 0.01 16 46 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 47 H 0.07 0.56 5.17 -51.92 -0.27 0.29 16 LS Contribution 375.76 15.07 5.66 5.66 Total: -1.00 -35.04 375.76 -9.10 -44.14 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.83 Total: 4.00 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -0.90 Total: -10.81 kcal Atomic # 7 Polarization: -66.20 SS G_CDS: 0.20 Total: -66.01 kcal Atomic # 8 Polarization: -41.34 SS G_CDS: -1.90 Total: -43.25 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.67 Total: 15.83 kcal Atomic # 16 Polarization: 51.09 SS G_CDS: -0.66 Total: 50.43 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.04 -9.10 -44.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416581199.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.022 kcal (2) G-P(sol) polarization free energy of solvation -35.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds