Wall clock time and date at job start Sat Apr 11 2020 06:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46502 * 120.00100 * 2 1 4 4 C 1.50705 * 109.47217 * 275.00363 * 3 2 1 5 5 H 1.08006 * 119.99896 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99853 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99332 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 120.00295 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.46759 * 90.00012 * 8 6 4 10 10 H 1.48495 * 109.47220 * 209.99911 * 8 6 4 11 11 H 1.48494 * 109.47032 * 330.00180 * 8 6 4 12 12 S 1.65597 * 120.00340 * 180.02562 * 2 1 3 13 13 O 1.42098 * 106.40674 * 156.45436 * 12 2 1 14 14 O 1.42107 * 106.40001 * 23.53487 * 12 2 1 15 15 N 1.65600 * 107.21730 * 269.99863 * 12 2 1 16 16 C 1.46507 * 120.00145 * 64.99684 * 15 12 2 17 17 C 1.50700 * 109.47085 * 164.78981 * 16 15 12 18 18 C 1.38227 * 120.41863 * 266.09977 * 17 16 15 19 19 N 1.31860 * 120.75790 * 179.73264 * 18 17 16 20 20 C 1.31882 * 121.72815 * 0.58242 * 19 18 17 21 21 C 1.38183 * 120.76393 * 359.68411 * 20 19 18 22 22 C 1.38623 * 120.41580 * 86.38298 * 17 16 15 23 23 C 1.50698 * 120.79304 * 359.97438 * 22 17 16 24 24 C 1.53005 * 109.47220 * 187.50121 * 23 22 17 25 25 C 1.52999 * 109.47398 * 307.50376 * 23 22 17 26 26 C 1.53001 * 109.46764 * 67.50754 * 23 22 17 27 27 H 1.09001 * 109.47249 * 270.00008 * 1 2 3 28 28 H 1.09002 * 109.47335 * 29.99796 * 1 2 3 29 29 H 1.09002 * 109.47545 * 149.99823 * 1 2 3 30 30 H 1.08999 * 109.47349 * 35.00265 * 3 2 1 31 31 H 1.08993 * 109.47501 * 155.00338 * 3 2 1 32 32 H 0.97006 * 119.98996 * 179.97438 * 7 6 4 33 33 H 0.97005 * 120.00226 * 244.99417 * 15 12 2 34 34 H 1.08998 * 109.46843 * 284.79224 * 16 15 12 35 35 H 1.09001 * 109.47073 * 44.78996 * 16 15 12 36 36 H 1.08000 * 119.62020 * 0.02615 * 18 17 16 37 37 H 1.08000 * 119.61655 * 179.70759 * 20 19 18 38 38 H 1.07998 * 120.41670 * 180.02562 * 21 20 19 39 39 H 1.08995 * 109.46589 * 60.00466 * 24 23 22 40 40 H 1.08998 * 109.47119 * 180.02562 * 24 23 22 41 41 H 1.09001 * 109.46993 * 300.00327 * 24 23 22 42 42 H 1.09001 * 109.46664 * 75.94211 * 25 23 22 43 43 H 1.09000 * 109.46783 * 195.93831 * 25 23 22 44 44 H 1.09001 * 109.47233 * 315.94458 * 25 23 22 45 45 H 1.08994 * 109.47661 * 75.49904 * 26 23 22 46 46 H 1.09001 * 109.47140 * 195.50190 * 26 23 22 47 47 H 1.09007 * 109.47110 * 315.49312 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3413 1.7658 -1.4154 5 1 1.9288 1.1935 -2.2333 6 6 3.0006 2.9504 -1.6664 7 7 3.1265 3.3838 -2.9018 8 14 3.7148 3.9397 -0.2520 9 1 5.1117 3.5040 0.0010 10 1 3.7020 5.3830 -0.6013 11 1 2.8985 3.7186 0.9686 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1565 -0.5451 14 8 1.4113 -2.4063 -0.5454 15 7 2.5381 -1.8592 1.5810 16 6 1.3947 -2.1788 2.4393 17 6 1.8797 -2.8804 3.6817 18 6 1.9114 -4.2611 3.7386 19 7 2.3395 -4.8818 4.8203 20 6 2.7409 -4.2188 5.8874 21 6 2.7322 -2.8371 5.9057 22 6 2.2943 -2.1491 4.7841 23 6 2.2696 -0.6425 4.7641 24 6 2.9489 -0.1045 6.0252 25 6 3.0153 -0.1365 3.5277 26 6 0.8194 -0.1568 4.7194 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5139 30 1 1.6502 2.0043 0.5895 31 1 3.1857 1.1177 0.4342 32 1 3.5900 4.2175 -3.0782 33 1 3.4389 -1.8968 1.9391 34 1 0.8816 -1.2585 2.7185 35 1 0.7062 -2.8294 1.9000 36 1 1.5863 -4.8381 2.8855 37 1 3.0805 -4.7620 6.7568 38 1 3.0625 -2.2998 6.7824 39 1 3.9819 -0.4505 6.0570 40 1 2.9306 0.9852 6.0109 41 1 2.4175 -0.4651 6.9060 42 1 2.3901 -0.2727 2.6453 43 1 3.2454 0.9219 3.6502 44 1 3.9416 -0.6982 3.4069 45 1 0.3668 -0.2727 5.7042 46 1 0.7968 0.8940 4.4306 47 1 0.2613 -0.7457 3.9914 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416581199.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:50 Heat of formation + Delta-G solvation = -50.063878 kcal Electronic energy + Delta-G solvation = -29735.348308 eV Core-core repulsion = 25851.708983 eV Total energy + Delta-G solvation = -3883.639326 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.83572 -38.42665 -38.30690 -37.27402 -36.88648 -36.36232 -34.48371 -32.34619 -32.13249 -30.25196 -28.50680 -28.11954 -26.91382 -26.65882 -24.61712 -23.81789 -22.96180 -20.63262 -20.42478 -19.17774 -18.76327 -18.35988 -17.88269 -17.46932 -17.14406 -16.59103 -16.10636 -15.79258 -15.45878 -15.34328 -15.23171 -14.98062 -14.68036 -14.48696 -14.44534 -14.17511 -14.10730 -13.79630 -13.41008 -13.39459 -13.18149 -13.12120 -13.09785 -12.98015 -12.90509 -12.53530 -12.40408 -12.34426 -12.23966 -11.97690 -11.93988 -11.89695 -11.68615 -11.35695 -10.76584 -10.55929 -10.43035 -10.21326 -10.03532 -9.74718 -8.26927 -6.32706 -0.46335 0.16919 0.31036 1.37915 1.42435 1.50417 2.03724 2.37221 2.59209 2.87197 3.07579 3.34227 3.47719 3.58087 3.66778 3.86193 3.89559 4.04868 4.08179 4.21049 4.24834 4.35314 4.46633 4.70729 4.71127 4.74670 4.75553 4.77665 4.82050 4.86355 4.90383 4.91587 4.96909 5.06894 5.07562 5.11866 5.21427 5.31268 5.38067 5.42703 5.45606 5.50824 5.56936 5.71498 5.77336 6.01299 6.32984 6.71081 7.02882 7.30335 8.90816 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014449 B = 0.004242 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.432788 B = 6598.985875 C = 7722.612567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.995 5.995 3 C 0.238 3.762 4 C -0.544 4.544 5 H 0.026 0.974 6 C 0.005 3.995 7 N -0.951 5.951 8 Si 0.942 3.058 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.221 1.221 12 S 2.794 3.206 13 O -1.010 7.010 14 O -1.009 7.009 15 N -1.112 6.112 16 C 0.148 3.852 17 C -0.149 4.149 18 C 0.105 3.895 19 N -0.515 5.515 20 C 0.097 3.903 21 C -0.172 4.172 22 C -0.011 4.011 23 C -0.029 4.029 24 C -0.142 4.142 25 C -0.173 4.173 26 C -0.150 4.150 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.035 0.965 32 H 0.266 0.734 33 H 0.421 0.579 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.160 0.840 37 H 0.179 0.821 38 H 0.163 0.837 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.581 -9.067 25.366 27.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.836 5.836 3 C 0.113 3.887 4 C -0.583 4.583 5 H 0.044 0.956 6 C -0.192 4.192 7 N -0.591 5.591 8 Si 0.764 3.236 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.143 1.143 12 S 2.803 3.197 13 O -0.994 6.994 14 O -0.992 6.992 15 N -0.876 5.876 16 C 0.023 3.977 17 C -0.153 4.153 18 C -0.052 4.052 19 N -0.224 5.224 20 C -0.060 4.060 21 C -0.191 4.191 22 C -0.019 4.019 23 C -0.029 4.029 24 C -0.199 4.199 25 C -0.231 4.231 26 C -0.207 4.207 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.258 0.742 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.177 0.823 37 H 0.196 0.804 38 H 0.180 0.820 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.446 -10.341 24.414 26.884 hybrid contribution 0.875 1.516 -0.192 1.761 sum -3.571 -8.825 24.222 26.026 Atomic orbital electron populations 1.21685 0.77685 1.03677 1.03133 1.57253 1.15821 1.21231 1.89332 1.19206 0.91988 0.82359 0.95163 1.21763 1.36172 1.06714 0.93657 0.95558 1.25958 0.95828 0.98715 0.98714 1.70091 1.44199 1.22900 1.21919 0.85812 0.79852 0.77475 0.80506 1.19666 1.20797 1.14324 1.01324 0.72146 0.72771 0.73495 1.93588 1.43034 1.85420 1.77320 1.93507 1.67720 1.60202 1.77740 1.56181 1.15849 1.85116 1.30488 1.20612 0.87364 1.01122 0.88595 1.20578 1.03875 0.94818 0.96023 1.22912 0.94518 0.91610 0.96160 1.67743 1.11680 1.41971 1.01032 1.23280 0.94081 0.92264 0.96346 1.22423 1.01483 0.95405 0.99828 1.20428 0.92792 0.96254 0.92467 1.19583 0.97405 0.88822 0.97127 1.21987 1.00467 1.01578 0.95900 1.22693 1.00623 1.01446 0.98332 1.22131 0.93572 1.02045 1.02947 0.89488 0.91124 0.91130 0.92120 0.94719 0.92466 0.74160 0.87865 0.89058 0.82270 0.80403 0.81970 0.92192 0.91665 0.90854 0.90270 0.91823 0.93008 0.91228 0.91249 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.43 10.68 127.77 1.36 3.79 16 2 N -0.99 -36.49 3.23 -543.23 -1.75 -38.24 16 3 C 0.24 10.25 4.15 85.63 0.36 10.60 16 4 C -0.54 -30.91 9.94 25.60 0.25 -30.66 16 5 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 6 C 0.01 0.31 5.47 84.65 0.46 0.77 16 7 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 8 Si 0.94 41.48 27.47 68.60 1.88 43.36 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.22 -8.13 6.54 99.48 0.65 -7.48 16 12 S 2.79 102.67 6.10 -56.49 -0.34 102.32 16 13 O -1.01 -47.21 17.11 -128.00 -2.19 -49.40 16 14 O -1.01 -39.76 16.21 -128.00 -2.07 -41.83 16 15 N -1.11 -28.18 3.76 -190.78 -0.72 -28.89 16 16 C 0.15 2.92 5.09 85.63 0.44 3.36 16 17 C -0.15 -2.78 5.02 -19.77 -0.10 -2.88 16 18 C 0.11 2.13 10.85 84.69 0.92 3.05 16 19 N -0.52 -10.76 10.36 -195.84 -2.03 -12.79 16 20 C 0.10 1.51 11.18 84.67 0.95 2.45 16 21 C -0.17 -2.35 9.08 22.36 0.20 -2.14 16 22 C -0.01 -0.17 4.69 -19.67 -0.09 -0.27 16 23 C -0.03 -0.43 0.75 -52.93 -0.04 -0.47 16 24 C -0.14 -1.60 7.07 71.98 0.51 -1.09 16 25 C -0.17 -3.32 6.85 71.98 0.49 -2.82 16 26 C -0.15 -1.97 8.20 71.98 0.59 -1.38 16 27 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.07 2.21 8.07 -2.39 -0.02 2.19 16 29 H 0.07 2.04 7.02 -2.39 -0.02 2.02 16 30 H 0.06 2.32 7.17 -2.39 -0.02 2.30 16 31 H 0.03 1.48 7.04 -2.39 -0.02 1.46 16 32 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 33 H 0.42 9.90 6.91 -96.74 -0.67 9.23 16 34 H 0.10 1.74 3.67 -2.39 -0.01 1.73 16 35 H 0.09 1.75 7.67 -2.39 -0.02 1.73 16 36 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 37 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 38 H 0.16 1.37 6.09 -2.91 -0.02 1.35 16 39 H 0.06 0.67 7.90 -2.39 -0.02 0.65 16 40 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 41 H 0.07 0.61 7.22 -2.39 -0.02 0.59 16 42 H 0.08 1.67 3.91 -2.39 -0.01 1.66 16 43 H 0.06 1.21 8.04 -2.39 -0.02 1.19 16 44 H 0.05 1.01 7.08 -2.39 -0.02 0.99 16 45 H 0.07 0.76 8.05 -2.39 -0.02 0.74 16 46 H 0.07 0.92 8.05 -2.39 -0.02 0.90 16 47 H 0.07 0.87 5.17 -2.38 -0.01 0.86 16 Total: -1.00 -79.41 375.76 -0.35 -79.76 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.27 Total: 22.95 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 6.30 Total: -17.69 kcal Atomic # 7 Polarization: -135.28 SS G_CDS: -4.20 Total: -139.48 kcal Atomic # 8 Polarization: -86.97 SS G_CDS: -4.26 Total: -91.23 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.88 Total: 43.36 kcal Atomic # 16 Polarization: 102.67 SS G_CDS: -0.34 Total: 102.32 kcal Total: -79.41 -0.35 -79.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416581199.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.695 kcal (2) G-P(sol) polarization free energy of solvation -79.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds