Wall clock time and date at job start Sat Apr 11 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47096 * 2 1 4 4 C 1.38254 * 119.99836 * 277.22190 * 3 2 1 5 5 C 1.38211 * 120.00270 * 180.02562 * 4 3 2 6 6 C 1.38262 * 119.99623 * 359.97438 * 5 4 3 7 7 C 1.38215 * 120.00133 * 359.74939 * 6 5 4 8 8 C 1.38212 * 119.99958 * 97.20489 * 3 2 1 9 9 C 1.50699 * 120.00141 * 0.02562 * 8 3 2 10 10 H 1.08999 * 109.46776 * 31.93008 * 9 8 3 11 11 N 1.46899 * 109.47019 * 151.92617 * 9 8 3 12 12 C 1.52999 * 109.47041 * 271.92522 * 9 8 3 13 13 N 1.46501 * 109.47182 * 182.51826 * 12 9 8 14 14 S 1.65593 * 120.00142 * 95.83639 * 13 12 9 15 15 O 1.42100 * 106.40485 * 180.48828 * 14 13 12 16 16 O 1.42099 * 106.40237 * 313.40700 * 14 13 12 17 17 N 1.65598 * 107.21898 * 66.94409 * 14 13 12 18 18 C 1.46502 * 119.99803 * 94.25361 * 17 14 13 19 19 C 1.46498 * 120.00213 * 274.25720 * 17 14 13 20 20 C 1.50703 * 109.47097 * 99.92977 * 19 17 14 21 21 H 1.07997 * 120.00076 * 5.02269 * 20 19 17 22 22 C 1.37874 * 119.99828 * 185.02436 * 20 19 17 23 23 N 1.31515 * 120.00269 * 184.97466 * 22 20 19 24 24 Si 1.86803 * 120.00195 * 4.97048 * 22 20 19 25 25 H 1.48501 * 109.47050 * 90.00210 * 24 22 20 26 26 H 1.48500 * 109.47596 * 210.00085 * 24 22 20 27 27 H 1.48500 * 109.46894 * 330.00518 * 24 22 20 28 28 H 1.08996 * 109.47347 * 186.85932 * 1 2 3 29 29 H 1.08999 * 109.47302 * 306.86271 * 1 2 3 30 30 H 1.08995 * 109.46890 * 66.86051 * 1 2 3 31 31 H 1.09005 * 109.47376 * 239.99479 * 2 1 3 32 32 H 1.09000 * 109.46853 * 119.99815 * 2 1 3 33 33 H 1.07998 * 119.99920 * 359.97438 * 4 3 2 34 34 H 1.07999 * 120.00309 * 179.97438 * 5 4 3 35 35 H 1.08003 * 119.99912 * 179.97438 * 6 5 4 36 36 H 1.07996 * 119.99950 * 180.27220 * 7 6 5 37 37 H 1.00903 * 111.00231 * 296.04713 * 11 9 8 38 38 H 1.00906 * 111.00051 * 60.00106 * 11 9 8 39 39 H 1.08997 * 109.47047 * 302.52185 * 12 9 8 40 40 H 1.08997 * 109.46762 * 62.52081 * 12 9 8 41 41 H 0.97006 * 119.99658 * 275.84053 * 13 12 9 42 42 H 1.09001 * 109.46954 * 90.00286 * 18 17 14 43 43 H 1.09006 * 109.47107 * 210.00201 * 18 17 14 44 44 H 1.09001 * 109.47376 * 330.00228 * 18 17 14 45 45 H 1.09001 * 109.46924 * 219.92335 * 19 17 14 46 46 H 1.09000 * 109.47250 * 339.92383 * 19 17 14 47 47 H 0.96999 * 120.00319 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1208 2.1227 -1.1878 5 6 2.5820 3.4256 -1.1880 6 6 2.9544 4.0272 -0.0001 7 6 2.8605 3.3275 1.1881 8 6 2.4042 2.0223 1.1875 9 6 2.3079 1.2572 2.4822 10 1 2.4900 0.1992 2.2934 11 7 3.3111 1.7656 3.4272 12 6 0.9098 1.4359 3.0775 13 7 0.8350 0.7418 4.3654 14 16 1.0884 1.5776 5.7724 15 8 0.9604 0.6348 6.8278 16 8 2.2555 2.3621 5.5684 17 7 -0.1676 2.6433 5.9424 18 6 -1.3416 2.2713 6.7358 19 6 -0.1048 3.9582 5.2994 20 6 -0.9093 3.9333 4.0253 21 1 -1.4824 3.0555 3.7656 22 6 -0.9137 5.0311 3.1913 23 7 -1.6911 5.0480 2.1306 24 14 0.1843 6.4947 3.5678 25 1 1.5010 6.3086 2.9067 26 1 -0.4535 7.7358 3.0599 27 1 0.3785 6.6029 5.0361 28 1 -0.3634 -1.0203 0.1227 29 1 -0.3634 0.6165 0.8222 30 1 -0.3633 0.4038 -0.9450 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8304 1.6526 -2.1157 34 1 2.6515 3.9737 -2.1160 35 1 3.3151 5.0452 -0.0003 36 1 3.1472 3.7989 2.1165 37 1 4.2461 1.6006 3.0856 38 1 3.1638 2.7453 3.6187 39 1 0.7106 2.4974 3.2246 40 1 0.1688 1.0182 2.3960 41 1 0.6372 -0.2074 4.3940 42 1 -1.1883 2.5689 7.7731 43 1 -2.2228 2.7760 6.3395 44 1 -1.4874 1.1923 6.6851 45 1 -0.5136 4.7117 5.9725 46 1 0.9327 4.2010 5.0694 47 1 -1.6945 5.8205 1.5440 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420468706.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:54 Heat of formation + Delta-G solvation = -45.912817 kcal Electronic energy + Delta-G solvation = -30225.149006 eV Core-core repulsion = 26341.689684 eV Total energy + Delta-G solvation = -3883.459322 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.73748 -36.69056 -35.99312 -35.55745 -35.00506 -34.02278 -32.93338 -32.48404 -29.75755 -29.13114 -28.41374 -26.70098 -25.14986 -23.78657 -22.91143 -21.88253 -20.90233 -19.84630 -18.74645 -17.43548 -16.84892 -16.67244 -16.60097 -15.85316 -15.73144 -15.05918 -14.93398 -14.50045 -14.23026 -13.72525 -13.58309 -13.47643 -13.31466 -13.16900 -12.99090 -12.95637 -12.54763 -12.34602 -12.18295 -11.79125 -11.71202 -11.66114 -11.59113 -11.36059 -11.22725 -11.14569 -11.05523 -10.72901 -10.69355 -10.54107 -10.39898 -10.28242 -10.19595 -9.63172 -9.18204 -8.68929 -8.52770 -8.32458 -8.14065 -8.04732 -6.22666 -4.22198 1.41467 1.61058 1.64625 3.19324 3.28191 3.32456 3.68891 3.98841 4.28563 4.31415 4.86623 4.91518 4.99258 5.08440 5.09731 5.20130 5.29419 5.32828 5.46354 5.55625 5.59820 5.63690 5.68866 5.75463 5.77805 6.00590 6.01307 6.07514 6.08629 6.17584 6.27684 6.27855 6.32607 6.48144 6.58006 6.67798 6.73086 6.77417 6.85044 6.89973 7.10904 7.25595 7.29833 7.48469 7.61900 7.70331 7.99006 8.35635 8.82033 9.38330 10.88667 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009791 B = 0.006207 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2859.104352 B = 4510.150304 C = 5877.724718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 C -0.074 4.074 4 C -0.118 4.118 5 C -0.122 4.122 6 C -0.119 4.119 7 C -0.107 4.107 8 C -0.106 4.106 9 C 0.106 3.894 10 H 0.087 0.913 11 N -0.822 5.822 12 C 0.123 3.877 13 N -1.112 6.112 14 S 2.792 3.208 15 O -1.009 7.009 16 O -0.960 6.960 17 N -0.998 5.998 18 C 0.106 3.894 19 C 0.215 3.785 20 C -0.545 4.545 21 H 0.082 0.918 22 C 0.082 3.918 23 N -0.884 5.884 24 Si 0.862 3.138 25 H -0.270 1.270 26 H -0.285 1.285 27 H -0.263 1.263 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.330 0.670 38 H 0.355 0.645 39 H 0.117 0.883 40 H 0.079 0.921 41 H 0.403 0.597 42 H 0.042 0.958 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.031 0.969 46 H 0.042 0.958 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.130 -7.259 -4.223 10.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.125 4.125 3 C -0.075 4.075 4 C -0.136 4.136 5 C -0.140 4.140 6 C -0.137 4.137 7 C -0.126 4.126 8 C -0.109 4.109 9 C -0.008 4.008 10 H 0.105 0.895 11 N -0.354 5.354 12 C -0.004 4.004 13 N -0.868 5.868 14 S 2.799 3.201 15 O -0.993 6.993 16 O -0.943 6.943 17 N -0.839 5.839 18 C -0.041 4.041 19 C 0.091 3.909 20 C -0.584 4.584 21 H 0.100 0.900 22 C -0.123 4.123 23 N -0.521 5.521 24 Si 0.688 3.312 25 H -0.196 1.196 26 H -0.211 1.211 27 H -0.188 1.188 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.173 0.827 39 H 0.135 0.865 40 H 0.097 0.903 41 H 0.234 0.766 42 H 0.061 0.939 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.049 0.951 46 H 0.059 0.941 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.513 -7.547 -3.222 10.476 hybrid contribution 0.193 1.330 -1.256 1.839 sum 6.706 -6.217 -4.477 10.182 Atomic orbital electron populations 1.21864 0.94372 1.01681 1.02959 1.20601 0.96555 0.92825 1.02493 1.19683 0.98868 0.96238 0.92723 1.20910 1.00550 0.94781 0.97378 1.21035 0.99866 0.95221 0.97853 1.21051 1.00471 0.99515 0.92703 1.20976 0.99502 0.93906 0.98169 1.20672 0.99199 0.95080 0.95991 1.21055 0.94991 0.98029 0.86690 0.89549 1.58992 1.04720 1.26092 1.45611 1.21644 0.93646 1.00917 0.84166 1.55627 1.88784 1.20437 1.21910 1.01619 0.73603 0.72656 0.72254 1.93527 1.87698 1.63507 1.54566 1.93531 1.45236 1.70155 1.85345 1.57560 1.34330 1.28837 1.63162 1.21213 0.89374 0.99453 0.94034 1.19555 0.97917 0.79884 0.93561 1.21426 1.30052 1.02973 1.03909 0.90001 1.24828 0.94921 0.97777 0.94747 1.69886 1.37348 1.30511 1.14322 0.87073 0.81594 0.82883 0.79643 1.19571 1.21125 1.18775 0.92634 0.91299 0.92669 0.91530 0.90722 0.86597 0.86581 0.86539 0.86226 0.85860 0.82653 0.86478 0.90285 0.76648 0.93915 0.90669 0.92570 0.95091 0.94059 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.83 37.16 0.37 -1.49 16 2 C -0.09 -1.03 5.77 -27.88 -0.16 -1.20 16 3 C -0.07 -1.06 5.13 -104.63 -0.54 -1.60 16 4 C -0.12 -1.63 9.73 -39.59 -0.39 -2.01 16 5 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 16 6 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 7 C -0.11 -1.75 9.28 -39.58 -0.37 -2.12 16 8 C -0.11 -1.66 5.03 -104.62 -0.53 -2.19 16 9 C 0.11 1.62 2.81 -68.87 -0.19 1.43 16 10 H 0.09 1.18 5.97 -51.93 -0.31 0.87 16 11 N -0.82 -12.97 6.63 -5.66 -0.04 -13.01 16 12 C 0.12 2.11 5.93 -4.04 -0.02 2.09 16 13 N -1.11 -18.16 5.67 -10.61 -0.06 -18.22 16 14 S 2.79 53.26 6.03 -107.50 -0.65 52.61 16 15 O -1.01 -20.76 17.07 -57.17 -0.98 -21.74 16 16 O -0.96 -19.76 12.95 -57.17 -0.74 -20.50 16 17 N -1.00 -19.75 3.24 -123.05 -0.40 -20.15 16 18 C 0.11 1.82 10.29 59.85 0.62 2.44 16 19 C 0.21 4.79 4.10 -5.19 -0.02 4.77 16 20 C -0.54 -13.52 7.58 -34.44 -0.26 -13.79 16 21 H 0.08 2.19 8.06 -52.49 -0.42 1.76 16 22 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 23 N -0.88 -24.50 13.96 55.43 0.77 -23.72 16 24 Si 0.86 19.88 27.36 -169.99 -4.65 15.23 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.26 -5.91 6.75 56.52 0.38 -5.53 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.99 5.58 -51.93 -0.29 0.70 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 32 H 0.07 0.84 5.72 -51.93 -0.30 0.54 16 33 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 36 H 0.12 1.97 6.34 -52.49 -0.33 1.63 16 37 H 0.33 4.50 9.06 -39.29 -0.36 4.14 16 38 H 0.36 6.19 5.87 -39.29 -0.23 5.95 16 39 H 0.12 2.41 4.95 -51.93 -0.26 2.15 16 40 H 0.08 1.30 5.49 -51.93 -0.29 1.02 16 41 H 0.40 5.51 8.96 -34.47 -0.31 5.21 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 44 H 0.06 0.88 7.68 -51.93 -0.40 0.48 16 45 H 0.03 0.69 7.76 -51.93 -0.40 0.29 16 46 H 0.04 0.94 5.91 -51.93 -0.31 0.63 16 47 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 375.38 15.07 5.66 5.66 Total: -1.00 -30.19 375.38 -10.20 -40.39 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: -6.73 Total: 19.42 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -2.39 Total: -15.97 kcal Atomic # 7 Polarization: -75.38 SS G_CDS: 0.28 Total: -75.10 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -1.72 Total: -42.24 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.65 Total: 15.23 kcal Atomic # 16 Polarization: 53.26 SS G_CDS: -0.65 Total: 52.61 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.19 -10.20 -40.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420468706.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.523 kcal (2) G-P(sol) polarization free energy of solvation -30.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds