Wall clock time and date at job start Sat Apr 11 2020 06:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99579 * 2 1 4 4 C 1.53005 * 109.47169 * 124.99960 * 3 2 1 5 5 N 1.46492 * 109.47188 * 179.97438 * 4 3 2 6 6 C 1.34818 * 126.59704 * 125.29201 * 5 4 3 7 7 C 1.36597 * 106.84030 * 180.15005 * 6 5 4 8 8 C 1.47517 * 125.77093 * 179.83825 * 7 6 5 9 9 O 1.21593 * 119.99978 * 353.78191 * 8 7 6 10 10 N 1.34777 * 120.00283 * 174.05328 * 8 7 6 11 11 C 1.46499 * 119.99526 * 3.39925 * 10 8 7 12 12 C 1.50698 * 109.47465 * 83.50375 * 11 10 8 13 13 H 1.07994 * 119.99923 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00019 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99692 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 119.99989 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47335 * 90.00090 * 16 14 12 18 18 H 1.48506 * 109.47125 * 209.99840 * 16 14 12 19 19 H 1.48500 * 109.47575 * 329.99850 * 16 14 12 20 20 C 1.46497 * 120.00370 * 183.39405 * 10 8 7 21 21 C 1.50706 * 109.46873 * 90.00228 * 20 10 8 22 22 C 1.38670 * 120.41458 * 269.72072 * 21 20 10 23 23 C 1.38631 * 118.42091 * 179.78483 * 22 21 20 24 24 C 1.38236 * 119.15681 * 0.51367 * 23 22 21 25 25 N 1.31848 * 120.76061 * 359.72574 * 24 23 22 26 26 C 1.31885 * 121.72887 * 0.02562 * 25 24 23 27 27 N 1.34402 * 108.45611 * 359.57147 * 7 6 5 28 28 N 1.28756 * 109.52682 * 0.27034 * 27 7 6 29 29 H 1.08002 * 120.00347 * 0.02562 * 1 2 3 30 30 H 1.08006 * 119.99701 * 179.97438 * 1 2 3 31 31 H 1.07995 * 120.00033 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47558 * 4.99687 * 3 2 1 33 33 H 1.09000 * 109.46806 * 244.99984 * 3 2 1 34 34 H 1.09002 * 109.46754 * 59.99751 * 4 3 2 35 35 H 1.09004 * 109.46622 * 300.00036 * 4 3 2 36 36 H 1.07995 * 126.57950 * 359.97438 * 6 5 4 37 37 H 1.09006 * 109.46864 * 203.50435 * 11 10 8 38 38 H 1.09003 * 109.47270 * 323.49905 * 11 10 8 39 39 H 0.96998 * 119.99448 * 180.02562 * 15 14 12 40 40 H 1.08991 * 109.47381 * 210.00410 * 20 10 8 41 41 H 1.09007 * 109.47014 * 330.00282 * 20 10 8 42 42 H 1.08003 * 120.79593 * 0.02562 * 22 21 20 43 43 H 1.07997 * 120.42790 * 180.22371 * 23 22 21 44 44 H 1.07991 * 119.61861 * 179.74650 * 24 23 22 45 45 H 1.08005 * 119.61578 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 7 3.7678 2.6017 1.1813 6 6 3.8538 3.4805 2.2001 7 6 4.6289 4.5173 1.7639 8 6 4.9897 5.7136 2.5481 9 8 4.4975 5.8923 3.6455 10 7 5.8606 6.6112 2.0458 11 6 6.3917 6.4378 0.6916 12 6 5.4122 6.9972 -0.3077 13 1 4.4864 7.4374 0.0319 14 6 5.6980 6.9469 -1.6556 15 7 4.8433 7.4355 -2.5277 16 14 7.2990 6.1848 -2.2431 17 1 7.0971 4.7336 -2.4850 18 1 7.7266 6.8420 -3.5043 19 1 8.3463 6.3729 -1.2072 20 6 6.2760 7.7603 2.8540 21 6 7.5009 7.3960 3.6529 22 6 7.3751 6.8536 4.9229 23 6 8.5291 6.5296 5.6192 24 6 9.7584 6.7663 5.0329 25 7 9.8400 7.2883 3.8249 26 6 8.7635 7.6041 3.1316 27 7 5.0122 4.2603 0.5016 28 7 4.5197 3.1323 0.1235 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1317 0.0895 33 1 2.6212 1.4027 -0.9314 34 1 3.7399 0.5067 1.0921 35 1 2.4771 1.2357 2.1130 36 1 3.3953 3.3847 3.1731 37 1 7.3417 6.9652 0.6036 38 1 6.5457 5.3768 0.4948 39 1 5.0443 7.3998 -3.4759 40 1 6.5058 8.6009 2.1994 41 1 5.4691 8.0381 3.5323 42 1 6.4011 6.6839 5.3577 43 1 8.4688 6.1020 6.6091 44 1 10.6623 6.5205 5.5703 45 1 8.8700 8.0296 2.1447 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424610439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:01 Heat of formation + Delta-G solvation = 136.361330 kcal Electronic energy + Delta-G solvation = -29252.624912 eV Core-core repulsion = 25273.918390 eV Total energy + Delta-G solvation = -3978.706522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.74422 -40.08853 -38.72909 -36.42485 -35.36952 -33.68465 -32.87958 -32.08258 -31.43459 -30.53481 -29.26160 -27.99477 -26.21124 -24.51764 -23.42832 -23.19447 -22.25677 -21.46886 -21.42582 -20.13617 -19.00096 -17.14585 -16.99977 -16.73879 -16.25382 -15.85512 -15.84186 -15.72711 -15.30911 -15.16330 -14.40791 -14.32049 -14.03828 -13.84008 -13.55020 -13.25246 -13.10856 -12.97565 -12.82336 -12.70480 -12.32873 -12.13635 -11.86944 -11.79777 -11.45581 -11.40616 -11.24723 -10.84795 -10.66908 -10.17664 -10.03705 -10.00170 -9.72635 -9.64045 -9.47774 -9.41742 -9.27844 -8.83859 -8.81938 -8.45903 -7.79427 -6.00050 -3.97070 1.22639 1.45273 1.51157 1.91853 2.35855 2.38797 3.38778 3.43230 3.48166 3.66029 3.87475 4.11331 4.36766 4.49410 4.50432 4.60164 4.65870 4.78740 4.93154 4.95266 5.01311 5.07175 5.09123 5.18725 5.25281 5.34703 5.35706 5.41932 5.56268 5.58704 5.73782 5.81001 5.83856 5.96322 6.10854 6.19935 6.28321 6.30522 6.42015 6.47695 6.55788 6.68994 6.86329 7.05897 7.37381 7.66702 8.06244 8.11901 8.46005 8.58790 8.81560 9.02905 9.62000 11.13318 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009253 B = 0.003871 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3025.378356 B = 7232.235716 C = 9271.386123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.154 4.154 3 C -0.109 4.109 4 C 0.131 3.869 5 N -0.373 5.373 6 C 0.077 3.923 7 C -0.088 4.088 8 C 0.607 3.393 9 O -0.570 6.570 10 N -0.571 5.571 11 C 0.200 3.800 12 C -0.513 4.513 13 H 0.072 0.928 14 C 0.084 3.916 15 N -0.899 5.899 16 Si 0.868 3.132 17 H -0.270 1.270 18 H -0.289 1.289 19 H -0.266 1.266 20 C 0.160 3.840 21 C -0.146 4.146 22 C -0.056 4.056 23 C -0.181 4.181 24 C 0.090 3.910 25 N -0.489 5.489 26 C 0.113 3.887 27 N -0.146 5.146 28 N -0.080 5.080 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.196 0.804 37 H 0.028 0.972 38 H 0.061 0.939 39 H 0.262 0.738 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.139 0.861 43 H 0.130 0.870 44 H 0.150 0.850 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.590 -11.569 12.851 17.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.173 4.173 3 C -0.147 4.147 4 C 0.010 3.990 5 N -0.158 5.158 6 C -0.079 4.079 7 C -0.227 4.227 8 C 0.394 3.606 9 O -0.451 6.451 10 N -0.299 5.299 11 C 0.079 3.921 12 C -0.552 4.552 13 H 0.090 0.910 14 C -0.118 4.118 15 N -0.538 5.538 16 Si 0.695 3.305 17 H -0.195 1.195 18 H -0.215 1.215 19 H -0.191 1.191 20 C 0.036 3.964 21 C -0.149 4.149 22 C -0.082 4.082 23 C -0.200 4.200 24 C -0.067 4.067 25 N -0.198 5.198 26 C -0.044 4.044 27 N -0.019 5.019 28 N -0.060 5.060 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.213 0.787 37 H 0.045 0.955 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.114 0.886 41 H 0.108 0.892 42 H 0.157 0.843 43 H 0.148 0.852 44 H 0.167 0.833 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.575 -11.543 11.384 16.223 hybrid contribution -0.569 -0.611 0.733 1.111 sum -1.144 -12.154 12.118 17.200 Atomic orbital electron populations 1.23938 0.95917 1.02152 1.00193 1.22773 0.95995 0.97748 1.00757 1.21044 0.98176 0.96451 0.99021 1.21843 0.94258 0.81988 1.00946 1.50577 1.36793 1.17297 1.11147 1.23165 0.99395 0.90183 0.95198 1.21359 1.08201 0.99533 0.93565 1.16760 0.78567 0.81269 0.83991 1.90673 1.55654 1.77388 1.21347 1.47797 1.42697 1.22755 1.16603 1.20283 0.94891 0.99309 0.77596 1.21114 1.05230 1.38746 0.90116 0.91007 1.24680 0.96333 0.94387 0.96408 1.69894 1.35788 1.46235 1.01855 0.86971 0.84525 0.80536 0.78426 1.19525 1.21541 1.19119 1.20223 0.93059 0.89113 0.94031 1.21443 0.97259 1.00509 0.95734 1.21672 0.99371 0.93585 0.93593 1.22113 0.93696 1.02722 1.01516 1.22705 0.97221 0.95145 0.91647 1.67699 1.33309 1.11318 1.07453 1.22803 0.87317 0.95214 0.99064 1.75201 1.13282 1.04658 1.08776 1.82114 1.09213 1.06205 1.08433 0.88353 0.88221 0.86898 0.90452 0.88855 0.88754 0.88185 0.78700 0.95455 0.92207 0.92764 0.88608 0.89166 0.84321 0.85183 0.83261 0.82571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.36 14.32 29.01 0.42 -0.95 16 2 C -0.15 -1.18 9.52 -36.03 -0.34 -1.53 16 3 C -0.11 -1.07 5.86 -27.88 -0.16 -1.23 16 4 C 0.13 1.22 6.52 -4.04 -0.03 1.20 16 5 N -0.37 -5.45 3.69 -61.06 -0.23 -5.68 16 6 C 0.08 1.17 11.28 -16.83 -0.19 0.98 16 7 C -0.09 -1.75 6.67 -83.55 -0.56 -2.30 16 8 C 0.61 12.48 7.61 -12.48 -0.09 12.39 16 9 O -0.57 -11.57 16.26 5.28 0.09 -11.48 16 10 N -0.57 -11.77 2.46 -177.67 -0.44 -12.21 16 11 C 0.20 4.66 3.83 -5.20 -0.02 4.64 16 12 C -0.51 -14.01 8.89 -34.44 -0.31 -14.31 16 13 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 14 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 15 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 16 Si 0.87 21.59 27.47 -169.99 -4.67 16.92 16 17 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 19 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 20 C 0.16 2.75 5.56 -5.19 -0.03 2.72 16 21 C -0.15 -2.31 5.48 -104.48 -0.57 -2.89 16 22 C -0.06 -0.80 9.86 -39.28 -0.39 -1.18 16 23 C -0.18 -2.23 10.11 -39.44 -0.40 -2.63 16 24 C 0.09 1.17 11.18 -17.55 -0.20 0.98 16 25 N -0.49 -7.70 10.36 -13.26 -0.14 -7.84 16 26 C 0.11 1.81 10.86 -17.55 -0.19 1.62 16 27 N -0.15 -3.23 8.05 32.85 0.26 -2.97 16 28 N -0.08 -1.57 13.65 60.35 0.82 -0.74 16 29 H 0.10 0.75 7.84 -52.49 -0.41 0.34 16 30 H 0.10 0.59 8.06 -52.48 -0.42 0.17 16 31 H 0.11 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.08 0.84 7.79 -51.93 -0.40 0.43 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.10 0.64 8.08 -51.93 -0.42 0.23 16 36 H 0.20 2.19 8.06 -52.49 -0.42 1.77 16 37 H 0.03 0.62 7.08 -51.93 -0.37 0.26 16 38 H 0.06 1.46 4.75 -51.93 -0.25 1.21 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.10 1.59 8.02 -51.93 -0.42 1.17 16 41 H 0.09 1.51 7.32 -51.93 -0.38 1.13 16 42 H 0.14 1.94 7.89 -52.48 -0.41 1.53 16 43 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 45 H 0.16 2.40 8.06 -52.48 -0.42 1.98 16 LS Contribution 389.45 15.07 5.87 5.87 Total: -1.00 -34.74 389.45 -6.84 -41.58 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.03 Total: 3.24 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -3.16 Total: -0.21 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 1.06 Total: -55.93 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.74 -6.84 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424610439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.943 kcal (2) G-P(sol) polarization free energy of solvation -34.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds