Wall clock time and date at job start Sat Apr 11 2020 06:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 120.00081 * 2 1 4 4 N 1.46497 * 109.46954 * 125.00173 * 3 2 1 5 5 C 1.46505 * 120.00069 * 270.00151 * 4 3 2 6 6 C 1.50702 * 109.46878 * 269.99924 * 5 4 3 7 7 H 1.08001 * 119.99950 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99486 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00182 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99579 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.46929 * 59.99742 * 10 8 6 12 12 H 1.48495 * 109.47050 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47013 * 300.00021 * 10 8 6 14 14 C 1.34771 * 119.99934 * 90.00047 * 4 3 2 15 15 O 1.21592 * 120.00464 * 179.97438 * 14 4 3 16 16 N 1.34777 * 120.00303 * 359.97438 * 14 4 3 17 17 C 1.40188 * 120.00471 * 179.97438 * 16 14 4 18 18 C 1.40403 * 125.97178 * 0.02562 * 17 16 14 19 19 C 1.35247 * 107.86738 * 179.71404 * 18 17 16 20 20 N 1.34965 * 107.85789 * 0.41907 * 19 18 17 21 21 C 1.46502 * 125.97521 * 179.83545 * 20 19 18 22 22 C 1.50703 * 109.46792 * 124.71677 * 21 20 19 23 23 C 1.38654 * 120.78409 * 90.00088 * 22 21 20 24 24 C 1.38209 * 119.15786 * 180.02562 * 23 22 21 25 25 N 1.31870 * 120.76375 * 0.26353 * 24 23 22 26 26 C 1.31872 * 121.72489 * 359.46946 * 25 24 23 27 27 C 1.38200 * 120.76402 * 0.52682 * 26 25 24 28 28 N 1.31215 * 125.97685 * 179.97438 * 17 16 14 29 29 H 1.08001 * 119.99873 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.00191 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.00191 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.46519 * 5.00460 * 3 2 1 33 33 H 1.08998 * 109.46881 * 245.00317 * 3 2 1 34 34 H 1.09000 * 109.47268 * 30.00320 * 5 4 3 35 35 H 1.09000 * 109.46931 * 150.00446 * 5 4 3 36 36 H 0.97007 * 119.99494 * 179.97438 * 9 8 6 37 37 H 0.97007 * 119.99427 * 0.02562 * 16 14 4 38 38 H 1.07996 * 126.06635 * 0.02562 * 18 17 16 39 39 H 1.08000 * 126.07244 * 180.25878 * 19 18 17 40 40 H 1.08996 * 109.46984 * 4.72431 * 21 20 19 41 41 H 1.08997 * 109.47513 * 244.72111 * 21 20 19 42 42 H 1.07995 * 120.42251 * 0.04566 * 23 22 21 43 43 H 1.08002 * 119.61346 * 179.97438 * 24 23 22 44 44 H 1.08004 * 119.61160 * 180.27376 * 26 25 24 45 45 H 1.08004 * 120.41549 * 179.76941 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8648 2.4249 6 6 2.8444 3.3435 2.4805 7 1 3.3034 3.8370 1.6365 8 6 2.5195 4.0664 3.6088 9 7 1.9601 3.4655 4.6362 10 14 2.8727 5.8995 3.6774 11 1 2.1359 6.5866 2.5865 12 1 2.4331 6.4394 4.9890 13 1 4.3304 6.1292 3.5115 14 6 4.2497 0.8661 0.9823 15 8 5.0220 0.8887 1.9212 16 7 4.6496 0.3753 -0.2075 17 6 5.9561 -0.1087 -0.3627 18 6 6.9467 -0.1425 0.6317 19 6 8.0607 -0.6850 0.0895 20 7 7.7933 -0.9760 -1.2010 21 6 8.7255 -1.5756 -2.1589 22 6 8.1119 -2.8214 -2.7444 23 6 7.3410 -2.7593 -3.8952 24 6 6.7939 -3.9226 -4.4028 25 7 6.9938 -5.0798 -3.8028 26 6 7.7254 -5.1770 -2.7099 27 6 8.3042 -4.0566 -2.1448 28 7 6.4668 -0.6101 -1.4625 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0897 33 1 2.6213 1.4026 -0.9314 34 1 1.4888 1.6965 2.5460 35 1 3.0991 1.3602 3.2259 36 1 1.7319 3.9741 5.4301 37 1 4.0336 0.3576 -0.9566 38 1 6.8369 0.1989 1.6504 39 1 8.9985 -0.8529 0.5981 40 1 9.6542 -1.8330 -1.6497 41 1 8.9342 -0.8636 -2.9574 42 1 7.1704 -1.8140 -4.3888 43 1 6.1918 -3.8827 -5.2985 44 1 7.8704 -6.1429 -2.2490 45 1 8.8993 -4.1421 -1.2475 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432953935.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:12 Heat of formation + Delta-G solvation = 110.078317 kcal Electronic energy + Delta-G solvation = -28479.151439 eV Core-core repulsion = 24499.305200 eV Total energy + Delta-G solvation = -3979.846239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.38590 -41.20595 -40.80942 -37.44089 -36.37143 -35.26496 -34.77338 -33.72739 -32.15835 -31.90681 -30.92390 -29.50037 -27.49148 -26.89866 -25.14949 -24.44140 -23.31411 -22.66410 -21.75420 -21.17359 -20.45511 -18.95377 -18.53528 -18.35025 -17.87624 -17.46448 -17.12116 -16.69288 -16.56500 -16.42611 -15.94838 -15.89101 -15.57402 -14.98267 -14.75514 -14.63710 -14.48703 -14.39861 -14.15019 -13.85461 -13.73159 -13.44121 -13.29481 -13.08817 -12.86345 -12.56680 -12.47012 -12.29480 -12.18060 -11.85778 -11.72248 -11.65865 -10.96234 -10.75900 -10.61054 -10.49613 -10.37385 -10.08819 -9.84112 -9.60714 -9.06755 -8.18884 -6.33186 0.08668 0.20116 0.87719 1.09795 1.38849 1.39140 1.43131 1.50473 1.69566 2.07567 2.38143 2.47296 2.87069 3.01923 3.11320 3.40272 3.58718 3.68942 3.93679 4.00244 4.07158 4.14574 4.17099 4.22572 4.30543 4.45640 4.50627 4.61715 4.69457 4.77280 4.87685 4.91255 4.95132 4.96753 5.01720 5.21576 5.24553 5.29677 5.53248 5.66693 5.71307 5.74804 5.80480 5.90842 5.96090 6.08577 6.17388 6.64303 6.74794 7.00140 7.07394 7.32997 7.58415 8.87745 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015419 B = 0.002510 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.552346 B =11151.344116 C =12296.539960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.190 4.190 3 C 0.134 3.866 4 N -0.604 5.604 5 C 0.282 3.718 6 C -0.542 4.542 7 H 0.052 0.948 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.965 3.035 11 H -0.262 1.262 12 H -0.278 1.278 13 H -0.279 1.279 14 C 0.705 3.295 15 O -0.603 6.603 16 N -0.643 5.643 17 C 0.303 3.697 18 C -0.305 4.305 19 C 0.089 3.911 20 N -0.363 5.363 21 C 0.175 3.825 22 C -0.072 4.072 23 C -0.143 4.143 24 C 0.080 3.920 25 N -0.511 5.511 26 C 0.079 3.921 27 C -0.154 4.154 28 N -0.338 5.338 29 H 0.116 0.884 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.028 0.972 35 H 0.002 0.998 36 H 0.267 0.733 37 H 0.416 0.584 38 H 0.142 0.858 39 H 0.224 0.776 40 H 0.151 0.849 41 H 0.110 0.890 42 H 0.145 0.855 43 H 0.171 0.829 44 H 0.174 0.826 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.343 -13.520 -18.386 25.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.209 4.209 3 C 0.011 3.989 4 N -0.338 5.338 5 C 0.161 3.839 6 C -0.581 4.581 7 H 0.070 0.930 8 C -0.188 4.188 9 N -0.566 5.566 10 Si 0.789 3.211 11 H -0.186 1.186 12 H -0.203 1.203 13 H -0.204 1.204 14 C 0.406 3.594 15 O -0.481 6.481 16 N -0.297 5.297 17 C 0.047 3.953 18 C -0.336 4.336 19 C -0.057 4.057 20 N -0.147 5.147 21 C 0.056 3.944 22 C -0.081 4.081 23 C -0.164 4.164 24 C -0.076 4.076 25 N -0.220 5.220 26 C -0.077 4.077 27 C -0.174 4.174 28 N -0.170 5.170 29 H 0.134 0.866 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.046 0.954 35 H 0.020 0.980 36 H 0.076 0.924 37 H 0.255 0.745 38 H 0.160 0.840 39 H 0.240 0.760 40 H 0.169 0.831 41 H 0.128 0.872 42 H 0.163 0.837 43 H 0.188 0.812 44 H 0.191 0.809 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 12.253 -14.509 -19.134 26.958 hybrid contribution -0.077 1.831 1.338 2.269 sum 12.177 -12.678 -17.795 25.013 Atomic orbital electron populations 1.24065 0.95271 1.03112 0.97363 1.23278 0.97022 0.97898 1.02733 1.20784 0.92817 0.96853 0.88410 1.47395 1.09406 1.62822 1.14181 1.18681 0.93999 0.92469 0.78745 1.21669 1.40642 0.94412 1.01374 0.92963 1.25790 0.94674 1.03506 0.94828 1.70041 1.42732 1.38112 1.05725 0.85511 0.78435 0.79283 0.77825 1.18609 1.20336 1.20449 1.15828 0.82964 0.78467 0.82134 1.90796 1.53572 1.62998 1.40781 1.41706 1.10823 1.64159 1.12963 1.19135 0.86008 0.96670 0.93529 1.21875 0.93719 1.15705 1.02331 1.23075 1.00734 0.97300 0.84588 1.48342 1.08233 1.48951 1.09178 1.20962 0.89693 0.91232 0.92518 1.20490 0.97299 0.95279 0.95024 1.22253 0.96865 1.00478 0.96778 1.23105 0.97263 0.87596 0.99611 1.67670 1.14985 1.29192 1.10195 1.23167 0.92737 1.00036 0.91772 1.22361 1.01127 0.92563 1.01307 1.77218 0.93578 1.26364 1.19793 0.86596 0.87698 0.87729 0.89249 0.88894 0.95362 0.97971 0.92388 0.74479 0.84028 0.75986 0.83121 0.87207 0.83679 0.81184 0.80884 0.82252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 14.32 67.78 0.97 -2.97 16 2 C -0.19 -5.39 9.85 25.65 0.25 -5.14 16 3 C 0.13 4.36 5.61 85.64 0.48 4.84 16 4 N -0.60 -26.51 2.44 -848.56 -2.07 -28.58 16 5 C 0.28 15.29 5.16 85.63 0.44 15.73 16 6 C -0.54 -31.25 9.39 25.60 0.24 -31.01 16 7 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 8 C 0.01 0.65 5.46 84.66 0.46 1.11 16 9 N -0.93 -55.79 13.29 21.45 0.28 -55.50 16 10 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 11 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 14 C 0.71 31.67 8.25 179.06 1.48 33.15 16 15 O -0.60 -32.12 13.05 -4.01 -0.05 -32.17 16 16 N -0.64 -23.16 5.32 -321.23 -1.71 -24.87 16 17 C 0.30 10.58 8.11 133.31 1.08 11.67 16 18 C -0.31 -10.44 9.61 22.11 0.21 -10.23 16 19 C 0.09 1.97 11.44 83.52 0.96 2.93 16 20 N -0.36 -7.67 3.67 -351.84 -1.29 -8.96 16 21 C 0.18 1.97 6.68 85.63 0.57 2.54 16 22 C -0.07 -1.05 5.35 -19.67 -0.11 -1.15 16 23 C -0.14 -2.29 9.82 22.36 0.22 -2.07 16 24 C 0.08 1.41 11.18 84.68 0.95 2.36 16 25 N -0.51 -10.45 10.36 -195.84 -2.03 -12.47 16 26 C 0.08 1.29 11.18 84.68 0.95 2.24 16 27 C -0.15 -2.09 9.82 22.36 0.22 -1.87 16 28 N -0.34 -9.92 12.42 -54.44 -0.68 -10.60 16 29 H 0.12 2.37 8.06 -2.91 -0.02 2.34 16 30 H 0.10 2.48 7.84 -2.91 -0.02 2.46 16 31 H 0.10 2.96 8.06 -2.91 -0.02 2.94 16 32 H 0.09 2.97 7.72 -2.39 -0.02 2.95 16 33 H 0.09 2.49 6.36 -2.39 -0.02 2.48 16 34 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 35 H 0.00 0.13 7.42 -2.39 -0.02 0.12 16 36 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 37 H 0.42 12.48 6.55 -92.70 -0.61 11.87 16 38 H 0.14 5.87 5.91 -2.91 -0.02 5.86 16 39 H 0.22 2.51 8.06 -2.91 -0.02 2.49 16 40 H 0.15 0.46 8.03 -2.39 -0.02 0.44 16 41 H 0.11 0.97 8.10 -2.39 -0.02 0.95 16 42 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 43 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 44 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 45 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -82.15 391.15 4.26 -77.89 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 0.41 Total: 26.22 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 9.37 Total: 22.11 kcal Atomic # 7 Polarization: -133.50 SS G_CDS: -7.49 Total: -140.99 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.05 Total: -32.17 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -82.15 4.26 -77.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432953935.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.964 kcal (2) G-P(sol) polarization free energy of solvation -82.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds