Wall clock time and date at job start Sat Apr 11 2020 06:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47323 * 2 1 4 4 C 1.50697 * 109.47506 * 239.99579 * 2 1 3 5 5 H 1.07997 * 120.00594 * 240.84138 * 4 2 1 6 6 C 1.37886 * 119.99803 * 60.83236 * 4 2 1 7 7 N 1.31509 * 119.99965 * 194.57606 * 6 4 2 8 8 Si 1.86802 * 119.99697 * 14.58501 * 6 4 2 9 9 H 1.48498 * 109.46800 * 84.45141 * 8 6 4 10 10 H 1.48499 * 109.46768 * 204.44807 * 8 6 4 11 11 H 1.48493 * 109.47092 * 324.45034 * 8 6 4 12 12 C 1.53001 * 109.47064 * 119.99678 * 2 1 3 13 13 S 1.81397 * 109.47168 * 300.00049 * 12 2 1 14 14 O 1.42098 * 110.54446 * 68.37500 * 13 12 2 15 15 O 1.42103 * 110.54508 * 291.62343 * 13 12 2 16 16 N 1.65606 * 104.45170 * 179.97438 * 13 12 2 17 17 C 1.46921 * 120.63184 * 89.99696 * 16 13 12 18 18 C 1.53192 * 108.89712 * 233.56185 * 17 16 13 19 19 C 1.53073 * 109.29315 * 305.57896 * 18 17 16 20 20 C 1.53043 * 109.65571 * 61.15335 * 19 18 17 21 21 H 1.08994 * 109.50066 * 58.65430 * 20 19 18 22 22 N 1.46507 * 109.49524 * 178.74732 * 20 19 18 23 23 C 1.34948 * 126.03525 * 34.55079 * 22 20 19 24 24 C 1.35318 * 107.74344 * 179.83641 * 23 22 20 25 25 C 1.39867 * 107.91790 * 0.42793 * 24 23 22 26 26 N 1.30837 * 108.20839 * 359.73426 * 25 24 23 27 27 C 1.46926 * 120.63005 * 270.02396 * 16 13 12 28 28 H 1.09003 * 109.47214 * 310.23624 * 1 2 3 29 29 H 1.08999 * 109.46760 * 70.23652 * 1 2 3 30 30 H 1.09003 * 109.46996 * 190.23736 * 1 2 3 31 31 H 1.09003 * 109.47151 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.46687 * 299.99553 * 3 2 1 33 33 H 1.08991 * 109.47258 * 59.99631 * 3 2 1 34 34 H 0.96999 * 119.99672 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.47150 * 179.97438 * 12 2 1 36 36 H 1.08999 * 109.47535 * 60.00064 * 12 2 1 37 37 H 1.09010 * 109.58749 * 353.42011 * 17 16 13 38 38 H 1.09000 * 109.58785 * 113.69776 * 17 16 13 39 39 H 1.09003 * 109.49783 * 65.38591 * 18 17 16 40 40 H 1.08999 * 109.49878 * 185.48537 * 18 17 16 41 41 H 1.09000 * 109.34721 * 301.12926 * 19 18 17 42 42 H 1.08998 * 109.45137 * 181.23471 * 19 18 17 43 43 H 1.07997 * 126.13098 * 0.02562 * 23 22 20 44 44 H 1.07996 * 126.03752 * 180.15800 * 24 23 22 45 45 H 1.08011 * 125.89511 * 179.71170 * 25 24 23 46 46 H 1.08997 * 109.58808 * 246.15374 * 27 16 13 47 47 H 1.09004 * 109.58426 * 6.58213 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6420 -1.5964 -1.1313 6 6 1.7135 -0.2295 -2.4827 7 7 1.8970 -0.9849 -3.5435 8 14 1.0212 1.4951 -2.6724 9 1 2.1371 2.4734 -2.7241 10 1 0.2329 1.5765 -3.9282 11 1 0.1434 1.8060 -1.5157 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1340 2.7303 14 8 0.0279 -0.0182 2.8544 15 8 2.0479 1.4102 2.8544 16 7 2.0529 -0.7406 3.9937 17 6 3.3646 -0.4065 4.5651 18 6 4.2389 -1.6644 4.5691 19 6 3.5013 -2.7908 5.2974 20 6 2.1955 -3.1086 4.5652 21 1 2.4158 -3.3993 3.5381 22 7 1.5070 -4.2070 5.2479 23 6 1.4989 -4.4340 6.5781 24 6 0.7501 -5.5384 6.8033 25 6 0.2929 -6.0077 5.5676 26 7 0.7460 -5.2104 4.6344 27 6 1.2998 -1.8659 4.5641 28 1 -0.3634 0.6638 0.7845 29 1 -0.3633 0.3475 -0.9671 30 1 -0.3633 -1.0113 0.1826 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6723 -0.6466 -4.4244 35 1 3.1300 -0.7216 1.2491 36 1 1.6767 -1.7489 1.2494 37 1 3.8398 0.3669 3.9615 38 1 3.2375 -0.0465 5.5860 39 1 4.4422 -1.9695 3.5426 40 1 5.1787 -1.4526 5.0791 41 1 3.2786 -2.4764 6.3170 42 1 4.1302 -3.6807 5.3210 43 1 1.9978 -3.8391 7.3287 44 1 0.5457 -5.9818 7.7666 45 1 -0.3269 -6.8783 5.4108 46 1 1.0045 -1.6274 5.5859 47 1 0.4126 -2.0554 3.9599 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451158790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:29 Heat of formation + Delta-G solvation = 29.568139 kcal Electronic energy + Delta-G solvation = -29434.929114 eV Core-core repulsion = 25554.742892 eV Total energy + Delta-G solvation = -3880.186222 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.41355 -38.72539 -36.89253 -36.76355 -35.58747 -33.83352 -32.24346 -31.96349 -30.26399 -29.20332 -27.51753 -26.41540 -25.10163 -24.87371 -23.97325 -21.91083 -21.07321 -20.12489 -19.50216 -18.76280 -17.84650 -17.22435 -16.30718 -16.21738 -15.76877 -15.53993 -15.11891 -14.88613 -14.78230 -14.44970 -14.02631 -13.83828 -13.57160 -13.44550 -13.19175 -13.07711 -12.92250 -12.83386 -12.54682 -12.37151 -11.97030 -11.78248 -11.77357 -11.60821 -11.44964 -11.30672 -11.10449 -11.06331 -10.96741 -10.79098 -10.74451 -10.20684 -10.08837 -10.07092 -9.64826 -9.29591 -9.02416 -8.77590 -8.69065 -8.49220 -6.21197 -4.18793 0.53282 1.74920 2.20873 2.72385 2.84318 3.23363 3.32446 3.37203 4.07663 4.09079 4.29638 4.32121 4.36000 4.48459 4.59715 4.69639 4.75040 4.81425 4.92120 5.07590 5.08528 5.28369 5.32071 5.37023 5.42087 5.47692 5.51124 5.53050 5.56960 5.65966 5.83966 5.84919 5.88932 5.95260 6.16411 6.27364 6.33065 6.40568 6.45883 6.51510 6.67333 6.83653 6.85930 7.09555 7.28222 7.58568 7.59933 8.36430 8.81414 9.42501 10.91293 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015991 B = 0.003607 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.576329 B = 7761.613850 C = 8473.670027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.055 3.945 3 C -0.181 4.181 4 C -0.508 4.508 5 H 0.078 0.922 6 C 0.078 3.922 7 N -0.888 5.888 8 Si 0.873 3.127 9 H -0.281 1.281 10 H -0.300 1.300 11 H -0.246 1.246 12 C -0.574 4.574 13 S 2.587 3.413 14 O -0.957 6.957 15 O -0.958 6.958 16 N -1.004 6.004 17 C 0.115 3.885 18 C -0.133 4.133 19 C -0.124 4.124 20 C 0.144 3.856 21 H 0.111 0.889 22 N -0.364 5.364 23 C 0.054 3.946 24 C -0.277 4.277 25 C 0.042 3.958 26 N -0.290 5.290 27 C 0.116 3.884 28 H 0.036 0.964 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.266 0.734 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.171 0.829 44 H 0.145 0.855 45 H 0.182 0.818 46 H 0.075 0.925 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.367 -4.877 22.096 22.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.052 3.948 3 C -0.238 4.238 4 C -0.547 4.547 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.524 5.524 8 Si 0.705 3.295 9 H -0.208 1.208 10 H -0.228 1.228 11 H -0.172 1.172 12 C -0.707 4.707 13 S 2.686 3.314 14 O -0.947 6.947 15 O -0.948 6.948 16 N -0.839 5.839 17 C -0.010 4.010 18 C -0.173 4.173 19 C -0.163 4.163 20 C 0.040 3.960 21 H 0.129 0.871 22 N -0.147 5.147 23 C -0.093 4.093 24 C -0.307 4.307 25 C -0.144 4.144 26 N -0.111 5.111 27 C -0.011 4.011 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.117 0.883 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.188 0.812 44 H 0.163 0.837 45 H 0.199 0.801 46 H 0.093 0.907 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.903 -3.753 20.707 21.244 hybrid contribution 0.069 0.084 0.378 0.393 sum 2.973 -3.669 21.085 21.607 Atomic orbital electron populations 1.22684 0.96998 1.01354 1.01769 1.18233 0.92524 0.91685 0.92349 1.22821 1.02352 0.97866 1.00769 1.20631 1.34014 1.12583 0.87465 0.90386 1.24963 0.94530 0.97276 0.95792 1.69932 1.47774 1.35753 0.98917 0.87450 0.79812 0.85695 0.76570 1.20785 1.22848 1.17218 1.30433 1.11801 1.13019 1.15428 1.05954 0.74815 0.75161 0.75468 1.93564 1.29165 1.86408 1.85583 1.93545 1.78143 1.37475 1.85654 1.58040 1.29342 1.45928 1.50613 1.21484 0.82026 0.97073 1.00413 1.21965 0.98672 0.94487 1.02166 1.21865 0.94672 0.99971 0.99806 1.21737 0.91753 0.83933 0.98589 0.87081 1.48784 1.39594 1.21652 1.04653 1.22494 1.01033 0.99040 0.86696 1.21502 1.08695 1.01050 0.99404 1.23923 1.00073 0.99486 0.90910 1.77491 1.11492 1.00046 1.22041 1.21662 0.94171 0.84103 1.01166 0.94523 0.91385 0.92309 0.91754 0.92941 0.93325 0.92384 0.85633 0.85594 0.88320 0.90927 0.90391 0.89474 0.90729 0.90458 0.81230 0.83682 0.80082 0.90656 0.88013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.86 6.95 37.16 0.26 -3.60 16 2 C 0.05 1.25 0.52 -155.66 -0.08 1.17 16 3 C -0.18 -4.01 7.22 37.16 0.27 -3.75 16 4 C -0.51 -13.59 8.62 -34.44 -0.30 -13.89 16 5 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 6 C 0.08 2.18 5.31 -17.82 -0.09 2.08 16 7 N -0.89 -26.37 13.96 55.43 0.77 -25.60 16 8 Si 0.87 21.46 22.79 -169.99 -3.87 17.59 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 11 H -0.25 -5.68 4.67 56.52 0.26 -5.42 16 12 C -0.57 -10.31 5.10 37.16 0.19 -10.12 16 13 S 2.59 43.67 4.45 -107.50 -0.48 43.19 16 14 O -0.96 -18.60 14.57 -57.54 -0.84 -19.44 16 15 O -0.96 -17.82 14.35 -57.54 -0.83 -18.64 16 16 N -1.00 -12.40 3.22 -113.52 -0.37 -12.77 16 17 C 0.12 1.09 6.31 -3.71 -0.02 1.06 16 18 C -0.13 -0.96 6.09 -26.59 -0.16 -1.12 16 19 C -0.12 -0.90 4.76 -26.67 -0.13 -1.02 16 20 C 0.14 1.46 3.36 -67.81 -0.23 1.24 16 21 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 22 N -0.36 -4.07 3.53 -54.74 -0.19 -4.26 16 23 C 0.05 0.48 10.59 -17.22 -0.18 0.29 16 24 C -0.28 -2.49 10.80 -40.01 -0.43 -2.92 16 25 C 0.04 0.45 12.02 -17.37 -0.21 0.24 16 26 N -0.29 -3.87 12.58 30.63 0.39 -3.49 16 27 C 0.12 1.34 5.92 -3.71 -0.02 1.32 16 28 H 0.04 0.78 6.21 -51.93 -0.32 0.45 16 29 H 0.07 1.59 4.32 -51.93 -0.22 1.36 16 30 H 0.06 1.26 8.11 -51.93 -0.42 0.84 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.05 1.21 2.28 -51.93 -0.12 1.09 16 33 H 0.05 1.01 5.46 -51.93 -0.28 0.72 16 34 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.13 1.99 8.14 -51.92 -0.42 1.56 16 36 H 0.13 2.12 8.14 -51.92 -0.42 1.70 16 37 H 0.10 0.97 7.10 -51.92 -0.37 0.60 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.43 7.22 -51.93 -0.38 0.05 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.17 0.94 7.29 -52.49 -0.38 0.56 16 44 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.18 1.37 8.06 -52.48 -0.42 0.95 16 46 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.10 1.37 7.10 -51.93 -0.37 1.00 16 LS Contribution 362.68 15.07 5.47 5.47 Total: -1.00 -34.62 362.68 -8.30 -42.92 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.21 Total: 4.05 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: -1.14 Total: -29.02 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.60 Total: -46.11 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -1.66 Total: -38.08 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -3.87 Total: 17.59 kcal Atomic # 16 Polarization: 43.67 SS G_CDS: -0.48 Total: 43.19 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.62 -8.30 -42.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451158790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.489 kcal (2) G-P(sol) polarization free energy of solvation -34.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds