Wall clock time and date at job start Sat Apr 11 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47323 * 2 1 4 4 C 1.50697 * 109.47506 * 239.99579 * 2 1 3 5 5 H 1.07997 * 120.00594 * 240.84138 * 4 2 1 6 6 C 1.37886 * 119.99803 * 60.83236 * 4 2 1 7 7 N 1.31509 * 119.99965 * 194.57606 * 6 4 2 8 8 Si 1.86802 * 119.99697 * 14.58501 * 6 4 2 9 9 H 1.48498 * 109.46800 * 84.45141 * 8 6 4 10 10 H 1.48499 * 109.46768 * 204.44807 * 8 6 4 11 11 H 1.48493 * 109.47092 * 324.45034 * 8 6 4 12 12 C 1.53001 * 109.47064 * 119.99678 * 2 1 3 13 13 S 1.81397 * 109.47168 * 300.00049 * 12 2 1 14 14 O 1.42098 * 110.54446 * 68.37500 * 13 12 2 15 15 O 1.42103 * 110.54508 * 291.62343 * 13 12 2 16 16 N 1.65606 * 104.45170 * 179.97438 * 13 12 2 17 17 C 1.46921 * 120.63184 * 89.99696 * 16 13 12 18 18 C 1.53192 * 108.89712 * 233.56185 * 17 16 13 19 19 C 1.53073 * 109.29315 * 305.57896 * 18 17 16 20 20 C 1.53043 * 109.65571 * 61.15335 * 19 18 17 21 21 H 1.08994 * 109.50066 * 58.65430 * 20 19 18 22 22 N 1.46507 * 109.49524 * 178.74732 * 20 19 18 23 23 C 1.34948 * 126.03525 * 34.55079 * 22 20 19 24 24 C 1.35318 * 107.74344 * 179.83641 * 23 22 20 25 25 C 1.39867 * 107.91790 * 0.42793 * 24 23 22 26 26 N 1.30837 * 108.20839 * 359.73426 * 25 24 23 27 27 C 1.46926 * 120.63005 * 270.02396 * 16 13 12 28 28 H 1.09003 * 109.47214 * 310.23624 * 1 2 3 29 29 H 1.08999 * 109.46760 * 70.23652 * 1 2 3 30 30 H 1.09003 * 109.46996 * 190.23736 * 1 2 3 31 31 H 1.09003 * 109.47151 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.46687 * 299.99553 * 3 2 1 33 33 H 1.08991 * 109.47258 * 59.99631 * 3 2 1 34 34 H 0.96999 * 119.99672 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.47150 * 179.97438 * 12 2 1 36 36 H 1.08999 * 109.47535 * 60.00064 * 12 2 1 37 37 H 1.09010 * 109.58749 * 353.42011 * 17 16 13 38 38 H 1.09000 * 109.58785 * 113.69776 * 17 16 13 39 39 H 1.09003 * 109.49783 * 65.38591 * 18 17 16 40 40 H 1.08999 * 109.49878 * 185.48537 * 18 17 16 41 41 H 1.09000 * 109.34721 * 301.12926 * 19 18 17 42 42 H 1.08998 * 109.45137 * 181.23471 * 19 18 17 43 43 H 1.07997 * 126.13098 * 0.02562 * 23 22 20 44 44 H 1.07996 * 126.03752 * 180.15800 * 24 23 22 45 45 H 1.08011 * 125.89511 * 179.71170 * 25 24 23 46 46 H 1.08997 * 109.58808 * 246.15374 * 27 16 13 47 47 H 1.09004 * 109.58426 * 6.58213 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6420 -1.5964 -1.1313 6 6 1.7135 -0.2295 -2.4827 7 7 1.8970 -0.9849 -3.5435 8 14 1.0212 1.4951 -2.6724 9 1 2.1371 2.4734 -2.7241 10 1 0.2329 1.5765 -3.9282 11 1 0.1434 1.8060 -1.5157 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1340 2.7303 14 8 0.0279 -0.0182 2.8544 15 8 2.0479 1.4102 2.8544 16 7 2.0529 -0.7406 3.9937 17 6 3.3646 -0.4065 4.5651 18 6 4.2389 -1.6644 4.5691 19 6 3.5013 -2.7908 5.2974 20 6 2.1955 -3.1086 4.5652 21 1 2.4158 -3.3993 3.5381 22 7 1.5070 -4.2070 5.2479 23 6 1.4989 -4.4340 6.5781 24 6 0.7501 -5.5384 6.8033 25 6 0.2929 -6.0077 5.5676 26 7 0.7460 -5.2104 4.6344 27 6 1.2998 -1.8659 4.5641 28 1 -0.3634 0.6638 0.7845 29 1 -0.3633 0.3475 -0.9671 30 1 -0.3633 -1.0113 0.1826 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6723 -0.6466 -4.4244 35 1 3.1300 -0.7216 1.2491 36 1 1.6767 -1.7489 1.2494 37 1 3.8398 0.3669 3.9615 38 1 3.2375 -0.0465 5.5860 39 1 4.4422 -1.9695 3.5426 40 1 5.1787 -1.4526 5.0791 41 1 3.2786 -2.4764 6.3170 42 1 4.1302 -3.6807 5.3210 43 1 1.9978 -3.8391 7.3287 44 1 0.5457 -5.9818 7.7666 45 1 -0.3269 -6.8783 5.4108 46 1 1.0045 -1.6274 5.5859 47 1 0.4126 -2.0554 3.9599 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451158790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:28 Heat of formation + Delta-G solvation = 4.611089 kcal Electronic energy + Delta-G solvation = -29436.011333 eV Core-core repulsion = 25554.742892 eV Total energy + Delta-G solvation = -3881.268441 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.14814 -39.51841 -38.54685 -38.30937 -37.03807 -34.66901 -34.07480 -32.96256 -31.00430 -29.96410 -29.07749 -28.20469 -27.13812 -25.73111 -24.73599 -22.66141 -21.83707 -21.56498 -20.61586 -19.86392 -19.06132 -18.22488 -18.03310 -17.41751 -17.34768 -16.94104 -16.30673 -15.76230 -15.63098 -15.26434 -15.14646 -15.03203 -14.89409 -14.71911 -14.61699 -14.28639 -14.22200 -14.17120 -13.79045 -13.48584 -13.28406 -13.18350 -13.07726 -12.78562 -12.73798 -12.64452 -12.59171 -12.17035 -12.06784 -12.01815 -11.90580 -11.81414 -11.64523 -11.49369 -11.01260 -10.72082 -10.59758 -10.41451 -10.07419 -9.44173 -8.37662 -6.37613 -0.80553 1.02404 1.27781 1.32372 1.38525 1.40814 1.78133 2.01691 2.26895 2.73330 2.96232 3.09165 3.39202 3.45800 3.68620 3.81147 3.88985 3.96870 4.00061 4.09406 4.15209 4.19028 4.19926 4.41983 4.46454 4.54161 4.60062 4.63611 4.64858 4.69954 4.77448 4.83160 4.87300 4.91427 4.98525 5.02274 5.07265 5.12452 5.20794 5.30517 5.34010 5.47055 5.49101 5.59302 5.80297 6.19820 6.22895 6.65056 6.83891 7.26723 8.78313 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015991 B = 0.003607 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.576329 B = 7761.613850 C = 8473.670027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.045 3.955 3 C -0.185 4.185 4 C -0.505 4.505 5 H 0.047 0.953 6 C 0.026 3.974 7 N -0.935 5.935 8 Si 0.918 3.082 9 H -0.271 1.271 10 H -0.305 1.305 11 H -0.223 1.223 12 C -0.584 4.584 13 S 2.611 3.389 14 O -0.984 6.984 15 O -0.972 6.972 16 N -0.994 5.994 17 C 0.103 3.897 18 C -0.129 4.129 19 C -0.116 4.116 20 C 0.144 3.856 21 H 0.090 0.910 22 N -0.374 5.374 23 C 0.058 3.942 24 C -0.284 4.284 25 C 0.035 3.965 26 N -0.350 5.350 27 C 0.116 3.884 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.267 0.733 35 H 0.143 0.857 36 H 0.128 0.872 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.118 0.882 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.208 0.792 44 H 0.170 0.830 45 H 0.200 0.800 46 H 0.096 0.904 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.247 -3.988 25.808 26.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.043 3.957 3 C -0.242 4.242 4 C -0.543 4.543 5 H 0.066 0.934 6 C -0.173 4.173 7 N -0.574 5.574 8 Si 0.747 3.253 9 H -0.198 1.198 10 H -0.234 1.234 11 H -0.148 1.148 12 C -0.716 4.716 13 S 2.708 3.292 14 O -0.975 6.975 15 O -0.962 6.962 16 N -0.832 5.832 17 C -0.020 4.020 18 C -0.169 4.169 19 C -0.155 4.155 20 C 0.040 3.960 21 H 0.108 0.892 22 N -0.157 5.157 23 C -0.088 4.088 24 C -0.313 4.313 25 C -0.151 4.151 26 N -0.172 5.172 27 C -0.011 4.011 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.161 0.839 36 H 0.146 0.854 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.086 0.914 40 H 0.136 0.864 41 H 0.119 0.881 42 H 0.102 0.898 43 H 0.225 0.775 44 H 0.188 0.812 45 H 0.217 0.783 46 H 0.114 0.886 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.789 -2.863 24.421 24.879 hybrid contribution -0.169 -0.328 -0.649 0.746 sum 3.620 -3.191 23.772 24.257 Atomic orbital electron populations 1.22691 0.97079 1.01792 1.01624 1.18202 0.92540 0.92355 0.92617 1.22829 1.03154 0.97141 1.01065 1.20904 1.32577 1.11573 0.89287 0.93445 1.25692 0.95327 1.00629 0.95644 1.70057 1.50211 1.37648 0.99499 0.86693 0.79920 0.81701 0.76995 1.19808 1.23379 1.14758 1.30463 1.13065 1.13007 1.15022 1.04962 0.73997 0.74855 0.75377 1.93526 1.31133 1.86836 1.85962 1.93518 1.78294 1.38484 1.85882 1.57669 1.30763 1.45874 1.48897 1.21877 0.80495 0.98257 1.01409 1.21987 0.99421 0.93282 1.02187 1.21874 0.92746 1.00268 1.00577 1.21734 0.92822 0.83062 0.98415 0.89197 1.48852 1.39796 1.21501 1.05523 1.23159 1.00302 0.99060 0.86257 1.21886 1.08450 1.01185 0.99802 1.24410 0.99669 0.99591 0.91417 1.77432 1.13692 1.01902 1.24127 1.21727 0.93579 0.84417 1.01396 0.93138 0.92383 0.92274 0.90743 0.93748 0.91774 0.92432 0.83891 0.85388 0.88674 0.88328 0.91440 0.86358 0.88145 0.89759 0.77509 0.81204 0.78342 0.88612 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.85 6.95 71.98 0.50 -7.35 16 2 C 0.05 2.05 0.52 -52.93 -0.03 2.02 16 3 C -0.19 -7.93 7.22 71.98 0.52 -7.41 16 4 C -0.50 -27.61 8.62 25.60 0.22 -27.39 16 5 H 0.05 2.81 7.99 -2.91 -0.02 2.79 16 6 C 0.03 1.48 5.31 84.66 0.45 1.93 16 7 N -0.94 -57.47 13.96 21.45 0.30 -57.17 16 8 Si 0.92 44.24 22.79 68.60 1.56 45.80 16 9 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 10 H -0.31 -14.83 7.11 99.48 0.71 -14.12 16 11 H -0.22 -9.86 4.67 99.48 0.46 -9.39 16 12 C -0.58 -20.90 5.10 71.98 0.37 -20.53 16 13 S 2.61 84.85 4.45 -56.49 -0.25 84.60 16 14 O -0.98 -37.57 14.57 -127.65 -1.86 -39.43 16 15 O -0.97 -34.14 14.35 -127.65 -1.83 -35.97 16 16 N -0.99 -22.59 3.22 -513.07 -1.65 -24.24 16 17 C 0.10 1.60 6.31 86.36 0.54 2.15 16 18 C -0.13 -1.41 6.09 30.68 0.19 -1.22 16 19 C -0.12 -1.26 4.76 30.63 0.15 -1.12 16 20 C 0.14 2.72 3.36 45.07 0.15 2.87 16 21 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 22 N -0.37 -7.82 3.53 -327.11 -1.16 -8.98 16 23 C 0.06 0.85 10.59 83.54 0.88 1.74 16 24 C -0.28 -4.42 10.80 21.99 0.24 -4.19 16 25 C 0.03 0.70 12.02 85.24 1.02 1.73 16 26 N -0.35 -9.38 12.58 -57.02 -0.72 -10.09 16 27 C 0.12 2.50 5.92 86.36 0.51 3.01 16 28 H 0.05 2.10 6.21 -2.39 -0.01 2.09 16 29 H 0.06 2.68 4.32 -2.39 -0.01 2.67 16 30 H 0.06 2.58 8.11 -2.39 -0.02 2.56 16 31 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 32 H 0.04 1.96 2.28 -2.38 -0.01 1.96 16 33 H 0.06 2.54 5.46 -2.39 -0.01 2.52 16 34 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 35 H 0.14 4.47 8.14 -2.39 -0.02 4.45 16 36 H 0.13 4.43 8.14 -2.39 -0.02 4.42 16 37 H 0.09 1.59 7.10 -2.38 -0.02 1.57 16 38 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.10 0.61 7.22 -2.39 -0.02 0.59 16 42 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.21 1.26 7.29 -2.91 -0.02 1.24 16 44 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 45 H 0.20 2.89 8.06 -2.91 -0.02 2.87 16 46 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.07 2.04 7.10 -2.38 -0.02 2.02 16 Total: -1.00 -77.34 362.68 0.84 -76.50 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.73 Total: 22.75 kcal Atomic # 6 Polarization: -59.49 SS G_CDS: 5.72 Total: -53.77 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -3.23 Total: -100.48 kcal Atomic # 8 Polarization: -71.71 SS G_CDS: -3.69 Total: -75.40 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.56 Total: 45.80 kcal Atomic # 16 Polarization: 84.85 SS G_CDS: -0.25 Total: 84.60 kcal Total: -77.34 0.84 -76.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451158790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.113 kcal (2) G-P(sol) polarization free energy of solvation -77.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds