Wall clock time and date at job start Sat Apr 11 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46967 * 2 1 4 4 C 1.50694 * 109.47175 * 239.99813 * 2 1 3 5 5 H 1.08002 * 120.00192 * 240.84064 * 4 2 1 6 6 C 1.37882 * 120.00011 * 60.83220 * 4 2 1 7 7 N 1.31510 * 119.99909 * 194.57487 * 6 4 2 8 8 Si 1.86796 * 119.99687 * 14.58408 * 6 4 2 9 9 H 1.48507 * 109.47125 * 84.45050 * 8 6 4 10 10 H 1.48500 * 109.47203 * 204.44832 * 8 6 4 11 11 H 1.48499 * 109.47450 * 324.44971 * 8 6 4 12 12 C 1.52999 * 109.46924 * 119.99976 * 2 1 3 13 13 S 1.81400 * 109.47197 * 299.99949 * 12 2 1 14 14 O 1.42101 * 110.54289 * 68.37739 * 13 12 2 15 15 O 1.42101 * 110.54267 * 291.62666 * 13 12 2 16 16 N 1.65609 * 104.45108 * 180.02562 * 13 12 2 17 17 C 1.46923 * 120.62970 * 270.02332 * 16 13 12 18 18 C 1.53189 * 108.77926 * 126.36857 * 17 16 13 19 19 C 1.53039 * 109.31177 * 54.63098 * 18 17 16 20 20 C 1.53046 * 109.53965 * 298.63750 * 19 18 17 21 21 H 1.08997 * 109.49627 * 301.41156 * 20 19 18 22 22 N 1.46497 * 109.52430 * 181.33218 * 20 19 18 23 23 C 1.34956 * 126.03801 * 324.79875 * 22 20 19 24 24 C 1.35311 * 107.74689 * 179.83885 * 23 22 20 25 25 C 1.39873 * 107.92151 * 0.42296 * 24 23 22 26 26 N 1.30845 * 108.19825 * 359.73614 * 25 24 23 27 27 C 1.46924 * 120.62975 * 89.99776 * 16 13 12 28 28 H 1.09002 * 109.46957 * 310.23245 * 1 2 3 29 29 H 1.08998 * 109.47314 * 70.23346 * 1 2 3 30 30 H 1.08999 * 109.47536 * 190.23352 * 1 2 3 31 31 H 1.09007 * 109.47133 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.47452 * 299.99759 * 3 2 1 33 33 H 1.09002 * 109.47633 * 60.00622 * 3 2 1 34 34 H 0.97001 * 119.99409 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.47140 * 180.02562 * 12 2 1 36 36 H 1.09003 * 109.47585 * 59.99840 * 12 2 1 37 37 H 1.08994 * 109.58493 * 246.15564 * 17 16 13 38 38 H 1.09001 * 109.58557 * 6.43761 * 17 16 13 39 39 H 1.08997 * 109.50157 * 174.58858 * 18 17 16 40 40 H 1.09005 * 109.49463 * 294.65317 * 18 17 16 41 41 H 1.08997 * 109.45842 * 178.61852 * 19 18 17 42 42 H 1.08995 * 109.46020 * 58.65621 * 19 18 17 43 43 H 1.08000 * 126.12347 * 359.97438 * 23 22 20 44 44 H 1.07999 * 126.03989 * 180.15766 * 24 23 22 45 45 H 1.08001 * 125.90147 * 179.75727 * 25 24 23 46 46 H 1.09001 * 109.58269 * 113.84309 * 27 16 13 47 47 H 1.09002 * 109.70665 * 353.48815 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6420 -1.5964 -1.1314 6 6 1.7135 -0.2295 -2.4826 7 7 1.8969 -0.9848 -3.5434 8 14 1.0212 1.4951 -2.6723 9 1 2.1371 2.4736 -2.7240 10 1 0.2328 1.5767 -3.9281 11 1 0.1434 1.8061 -1.5156 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1339 2.7304 14 8 0.0279 -0.0183 2.8544 15 8 2.0479 1.4101 2.8544 16 7 2.0540 -0.7400 3.9937 17 6 1.3020 -1.8656 4.5647 18 6 2.1985 -3.1078 4.5658 19 6 3.5043 -2.7888 5.2973 20 6 4.2392 -1.6633 4.5654 21 1 4.4400 -1.9677 3.5383 22 7 5.5043 -1.3800 5.2476 23 6 5.7184 -1.4361 6.5789 24 6 7.0123 -1.1095 6.8027 25 6 7.6069 -0.8352 5.5668 26 7 6.7038 -0.9970 4.6339 27 6 3.3658 -0.4048 4.5644 28 1 -0.3633 0.6638 0.7846 29 1 -0.3634 0.3475 -0.9671 30 1 -0.3634 -1.0113 0.1826 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6722 -0.6465 -4.4243 35 1 3.1299 -0.7209 1.2495 36 1 1.6766 -1.7489 1.2493 37 1 1.0069 -1.6270 5.5865 38 1 0.4133 -2.0543 3.9624 39 1 1.6870 -3.9252 5.0741 40 1 2.4181 -3.3988 3.5385 41 1 4.1339 -3.6783 5.3209 42 1 3.2820 -2.4743 6.3169 43 1 4.9883 -1.6974 7.3307 44 1 7.4987 -1.0641 7.7659 45 1 8.6341 -0.5409 5.4096 46 1 3.2390 -0.0471 5.5862 47 1 3.8414 0.3696 3.9625 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451158791.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:32 Heat of formation + Delta-G solvation = 29.502455 kcal Electronic energy + Delta-G solvation = -29439.396593 eV Core-core repulsion = 25559.207522 eV Total energy + Delta-G solvation = -3880.189071 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.41996 -38.73023 -36.89191 -36.76516 -35.58785 -33.83532 -32.24400 -31.96332 -30.27051 -29.20679 -27.51728 -26.41759 -25.10147 -24.87255 -23.97645 -21.91334 -21.08100 -20.13029 -19.50501 -18.76531 -17.84709 -17.22731 -16.30838 -16.21599 -15.77093 -15.52267 -15.14837 -14.89613 -14.76205 -14.45184 -14.03326 -13.83735 -13.57693 -13.43813 -13.19197 -13.09071 -12.92214 -12.84470 -12.50070 -12.40057 -11.97954 -11.78058 -11.77341 -11.60668 -11.45173 -11.30740 -11.10404 -11.06426 -10.96789 -10.78958 -10.75264 -10.20669 -10.09021 -10.07291 -9.65197 -9.29723 -9.02532 -8.77551 -8.69571 -8.49122 -6.21395 -4.18891 0.53247 1.74154 2.20455 2.71573 2.84172 3.23898 3.32938 3.37337 4.07374 4.09080 4.29050 4.32200 4.36337 4.48659 4.59390 4.69260 4.74807 4.81308 4.91942 5.07619 5.08323 5.28297 5.31854 5.36795 5.42244 5.47478 5.51246 5.52771 5.57152 5.65547 5.84073 5.84428 5.89190 5.95235 6.16999 6.28160 6.33547 6.39512 6.44804 6.50797 6.67775 6.83477 6.85340 7.09534 7.27544 7.57768 7.59626 8.36366 8.81283 9.42476 10.91109 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015439 B = 0.003633 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.102482 B = 7705.063673 C = 8373.406594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.055 3.945 3 C -0.182 4.182 4 C -0.508 4.508 5 H 0.078 0.922 6 C 0.078 3.922 7 N -0.888 5.888 8 Si 0.873 3.127 9 H -0.280 1.280 10 H -0.300 1.300 11 H -0.246 1.246 12 C -0.573 4.573 13 S 2.587 3.413 14 O -0.956 6.956 15 O -0.958 6.958 16 N -1.004 6.004 17 C 0.115 3.885 18 C -0.133 4.133 19 C -0.124 4.124 20 C 0.144 3.856 21 H 0.111 0.889 22 N -0.364 5.364 23 C 0.054 3.946 24 C -0.277 4.277 25 C 0.042 3.958 26 N -0.291 5.291 27 C 0.116 3.884 28 H 0.036 0.964 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.266 0.734 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.171 0.829 44 H 0.145 0.855 45 H 0.182 0.818 46 H 0.075 0.925 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.309 -4.190 22.102 22.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.052 3.948 3 C -0.239 4.239 4 C -0.547 4.547 5 H 0.096 0.904 6 C -0.125 4.125 7 N -0.524 5.524 8 Si 0.705 3.295 9 H -0.208 1.208 10 H -0.229 1.229 11 H -0.172 1.172 12 C -0.707 4.707 13 S 2.686 3.314 14 O -0.947 6.947 15 O -0.949 6.949 16 N -0.839 5.839 17 C -0.010 4.010 18 C -0.173 4.173 19 C -0.163 4.163 20 C 0.040 3.960 21 H 0.129 0.871 22 N -0.147 5.147 23 C -0.092 4.092 24 C -0.306 4.306 25 C -0.144 4.144 26 N -0.111 5.111 27 C -0.011 4.011 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.091 0.909 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.188 0.812 44 H 0.163 0.837 45 H 0.199 0.801 46 H 0.093 0.907 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.361 -3.415 20.714 21.261 hybrid contribution 0.419 0.342 0.381 0.662 sum 3.780 -3.073 21.095 21.650 Atomic orbital electron populations 1.22681 0.96995 1.01281 1.01801 1.18233 0.92503 0.91709 0.92354 1.22823 1.02442 0.97851 1.00743 1.20631 1.33977 1.12599 0.87465 0.90375 1.24958 0.94542 0.97254 0.95788 1.69931 1.47798 1.35768 0.98912 0.87455 0.79827 0.85743 0.76522 1.20757 1.22861 1.17229 1.30430 1.11853 1.12962 1.15422 1.05960 0.74806 0.75175 0.75477 1.93557 1.28987 1.86458 1.85662 1.93552 1.78067 1.37682 1.85580 1.58037 1.27915 1.47355 1.50613 1.21490 0.94307 0.84769 1.00416 1.21958 0.94985 0.98201 1.02157 1.21860 0.97068 0.97570 0.99783 1.21747 0.79332 0.96349 0.98600 0.87076 1.48787 1.08874 1.52432 1.04583 1.22495 0.98351 1.01725 0.86676 1.21502 0.94455 1.15290 0.99402 1.23923 0.99514 1.00028 0.90930 1.77484 0.90800 1.20754 1.22080 1.21658 0.82376 0.95934 1.01166 0.94515 0.91379 0.92328 0.91735 0.92943 0.93332 0.92386 0.85698 0.85524 0.90929 0.88270 0.89490 0.90356 0.90454 0.90720 0.81224 0.83679 0.80088 0.90678 0.88034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.78 6.95 37.16 0.26 -3.52 16 2 C 0.05 1.24 0.52 -155.67 -0.08 1.16 16 3 C -0.18 -4.10 7.22 37.15 0.27 -3.83 16 4 C -0.51 -13.58 8.62 -34.44 -0.30 -13.88 16 5 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 6 C 0.08 2.18 5.31 -17.82 -0.09 2.09 16 7 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 8 Si 0.87 21.52 22.79 -169.99 -3.87 17.65 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 11 H -0.25 -5.68 4.67 56.52 0.26 -5.42 16 12 C -0.57 -10.31 5.10 37.16 0.19 -10.12 16 13 S 2.59 43.65 4.45 -107.50 -0.48 43.17 16 14 O -0.96 -17.86 14.57 -57.54 -0.84 -18.69 16 15 O -0.96 -18.56 14.34 -57.54 -0.83 -19.38 16 16 N -1.00 -12.39 3.22 -113.53 -0.37 -12.76 16 17 C 0.12 1.09 6.32 -3.71 -0.02 1.07 16 18 C -0.13 -0.97 6.08 -26.61 -0.16 -1.13 16 19 C -0.12 -0.90 4.78 -26.69 -0.13 -1.02 16 20 C 0.14 1.46 3.35 -67.81 -0.23 1.23 16 21 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 22 N -0.36 -4.04 3.53 -54.75 -0.19 -4.24 16 23 C 0.05 0.48 10.60 -17.22 -0.18 0.29 16 24 C -0.28 -2.48 10.80 -40.01 -0.43 -2.91 16 25 C 0.04 0.44 12.03 -17.36 -0.21 0.23 16 26 N -0.29 -3.85 12.58 30.63 0.39 -3.47 16 27 C 0.12 1.33 5.92 -3.71 -0.02 1.31 16 28 H 0.04 0.76 6.21 -51.93 -0.32 0.44 16 29 H 0.07 1.56 4.32 -51.93 -0.22 1.34 16 30 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 31 H 0.06 1.39 8.14 -51.92 -0.42 0.97 16 32 H 0.05 1.22 2.28 -51.93 -0.12 1.10 16 33 H 0.05 1.03 5.46 -51.93 -0.28 0.74 16 34 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 35 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 36 H 0.13 2.02 8.14 -51.92 -0.42 1.60 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.10 0.98 7.10 -51.93 -0.37 0.61 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.43 7.23 -51.93 -0.38 0.05 16 43 H 0.17 0.94 7.31 -52.49 -0.38 0.56 16 44 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.18 1.36 8.06 -52.49 -0.42 0.93 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.10 1.36 7.10 -51.93 -0.37 0.99 16 LS Contribution 362.71 15.07 5.47 5.47 Total: -1.00 -34.59 362.71 -8.30 -42.89 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -7.21 Total: 3.95 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: -1.14 Total: -29.02 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.60 Total: -46.03 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -1.66 Total: -38.08 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -3.87 Total: 17.65 kcal Atomic # 16 Polarization: 43.65 SS G_CDS: -0.48 Total: 43.17 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.59 -8.30 -42.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451158791.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.389 kcal (2) G-P(sol) polarization free energy of solvation -34.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds