Wall clock time and date at job start Sat Apr 11 2020 06:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47187 * 2 1 4 4 C 1.52995 * 109.47319 * 120.00391 * 2 1 3 5 5 N 1.46500 * 109.47305 * 174.99788 * 4 2 1 6 6 C 1.47178 * 125.40263 * 89.99626 * 5 4 2 7 7 C 1.53739 * 103.98926 * 182.17209 * 6 5 4 8 8 H 1.08999 * 111.52190 * 114.19242 * 7 6 5 9 9 C 1.53359 * 110.29067 * 238.58092 * 7 6 5 10 10 N 1.47099 * 108.06988 * 160.41292 * 9 7 6 11 11 C 1.34776 * 120.13370 * 122.60961 * 10 9 7 12 12 O 1.21278 * 120.00000 * 359.97438 * 11 10 9 13 13 C 1.50706 * 119.99827 * 180.02562 * 11 10 9 14 14 S 1.80996 * 109.46877 * 180.02562 * 13 11 10 15 15 C 1.76200 * 100.00107 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99394 * 359.97438 * 15 14 13 17 17 C 1.38798 * 120.00256 * 179.97438 * 15 14 13 18 18 N 1.31635 * 119.99946 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00030 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47085 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.46910 * 120.00305 * 19 17 15 22 22 H 1.48501 * 109.46831 * 240.00209 * 19 17 15 23 23 C 1.46823 * 119.73054 * 302.62728 * 10 9 7 24 24 C 1.53708 * 109.05303 * 56.33548 * 23 10 9 25 25 N 1.47422 * 108.15050 * 314.35530 * 24 23 10 26 26 C 1.33402 * 128.24927 * 234.36830 * 25 24 23 27 27 O 1.21590 * 123.14676 * 348.99726 * 26 25 24 28 28 H 1.09001 * 109.46549 * 299.99800 * 1 2 3 29 29 H 1.08996 * 109.46893 * 59.99849 * 1 2 3 30 30 H 1.08997 * 109.46782 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46549 * 240.00200 * 2 1 3 32 32 H 1.09006 * 109.46830 * 299.99944 * 3 2 1 33 33 H 1.08994 * 109.47043 * 59.99948 * 3 2 1 34 34 H 1.08999 * 109.46829 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47233 * 54.99196 * 4 2 1 36 36 H 1.09002 * 109.46734 * 294.99508 * 4 2 1 37 37 H 1.09002 * 110.55031 * 63.50483 * 6 5 4 38 38 H 1.08997 * 110.55077 * 300.83699 * 6 5 4 39 39 H 1.09000 * 109.74217 * 280.05744 * 9 7 6 40 40 H 1.08999 * 109.74023 * 40.77385 * 9 7 6 41 41 H 1.08997 * 109.46651 * 299.99812 * 13 11 10 42 42 H 1.08995 * 109.46842 * 59.99801 * 13 11 10 43 43 H 0.96996 * 119.99550 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.53858 * 176.20379 * 23 10 9 45 45 H 1.09001 * 109.54143 * 296.46113 * 23 10 9 46 46 H 1.08997 * 109.87801 * 73.29668 * 24 23 10 47 47 H 1.09010 * 109.87050 * 194.28909 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5002 -0.8265 1.1904 6 6 4.4485 0.1647 1.7236 7 6 5.8279 -0.4030 1.3514 8 1 6.3418 0.2345 0.6320 9 6 6.6725 -0.6185 2.6132 10 7 7.7469 -1.5685 2.2863 11 6 9.0364 -1.2189 2.4639 12 8 9.3128 -0.1189 2.8935 13 6 10.1348 -2.1943 2.1274 14 16 11.7416 -1.4362 2.4730 15 6 12.8101 -2.7560 2.0027 16 1 12.3943 -3.6820 1.6336 17 6 14.1860 -2.6057 2.1065 18 7 14.6927 -1.4769 2.5559 19 14 15.3187 -4.0051 1.6086 20 1 14.5064 -5.1569 1.1408 21 1 16.2131 -3.5521 0.5132 22 1 16.1370 -4.4191 2.7767 23 6 7.4089 -2.8990 1.7655 24 6 6.5487 -2.7395 0.5017 25 7 5.5124 -1.7276 0.7763 26 6 4.1900 -1.8428 0.6436 27 8 3.6575 -2.7786 0.0787 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 -0.8901 33 1 1.6768 1.9563 0.8899 34 1 3.1301 1.4424 -0.0005 35 1 1.6054 -1.7198 1.2951 36 1 1.7518 -0.1583 2.1369 37 1 4.3480 0.2469 2.8059 38 1 4.2939 1.1348 1.2513 39 1 7.1042 0.3297 2.9337 40 1 6.0488 -1.0273 3.4082 41 1 10.0200 -3.0935 2.7327 42 1 10.0762 -2.4573 1.0713 43 1 15.6542 -1.3720 2.6288 44 1 8.3241 -3.4369 1.5180 45 1 6.8505 -3.4544 2.5190 46 1 7.1683 -2.3984 -0.3277 47 1 6.0821 -3.6916 0.2485 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487514697.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:55 Heat of formation + Delta-G solvation = -38.907972 kcal Electronic energy + Delta-G solvation = -27871.054787 eV Core-core repulsion = 23987.899217 eV Total energy + Delta-G solvation = -3883.155569 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.65424 -39.54277 -37.29066 -36.91121 -35.41247 -33.36608 -32.46873 -32.00747 -29.67122 -28.55234 -27.61127 -27.12710 -25.56482 -24.76816 -23.74187 -21.91308 -21.09907 -20.16076 -18.85997 -17.76246 -17.24444 -17.13336 -16.68404 -16.14096 -15.78122 -15.48206 -15.39821 -14.87551 -14.83982 -14.55186 -14.21442 -14.02005 -13.90537 -13.57341 -13.38479 -13.27624 -13.09786 -12.72647 -12.65301 -12.37892 -12.24594 -12.00512 -11.99337 -11.71702 -11.63814 -11.56617 -11.21421 -11.10082 -11.08874 -11.06026 -10.78589 -10.28392 -9.84120 -9.53570 -9.46163 -9.11358 -8.95633 -8.40011 -8.28348 -6.55562 -6.25987 -3.97080 2.04215 2.79878 2.84779 2.98677 3.19108 3.21948 3.28246 3.39095 3.49386 4.12074 4.15830 4.27181 4.32506 4.49543 4.50033 4.64874 4.74295 4.83356 4.86797 4.91923 5.01386 5.06781 5.09569 5.18771 5.20854 5.25620 5.35466 5.38228 5.41672 5.46690 5.48523 5.53419 5.62809 5.65694 5.72948 5.77654 5.80273 5.89212 5.98941 6.02836 6.39101 6.45407 6.53830 7.31918 7.37955 7.56014 8.31175 8.35599 8.39905 9.19749 10.81445 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030317 B = 0.002139 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.367289 B =13084.439039 C =13636.886559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C -0.149 4.149 4 C 0.159 3.841 5 N -0.634 5.634 6 C 0.096 3.904 7 C 0.103 3.897 8 H 0.100 0.900 9 C 0.109 3.891 10 N -0.621 5.621 11 C 0.536 3.464 12 O -0.513 6.513 13 C -0.153 4.153 14 S -0.060 6.060 15 C -0.535 4.535 16 H 0.074 0.926 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.093 3.907 24 C 0.137 3.863 25 N -0.628 5.628 26 C 0.705 3.295 27 O -0.586 6.586 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.268 0.732 44 H 0.107 0.893 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.641 2.730 -2.536 26.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.138 4.138 3 C -0.206 4.206 4 C 0.037 3.963 5 N -0.372 5.372 6 C -0.028 4.028 7 C -0.002 4.002 8 H 0.118 0.882 9 C -0.015 4.015 10 N -0.357 5.357 11 C 0.325 3.675 12 O -0.386 6.386 13 C -0.303 4.303 14 S 0.167 5.833 15 C -0.683 4.683 16 H 0.092 0.908 17 C -0.136 4.136 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.032 4.032 24 C 0.014 3.986 25 N -0.366 5.366 26 C 0.407 3.593 27 O -0.464 6.464 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.127 0.873 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.125 0.875 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -26.384 3.866 -2.202 26.756 hybrid contribution 0.477 -2.076 -0.814 2.280 sum -25.906 1.790 -3.016 26.143 Atomic orbital electron populations 1.21762 0.94421 1.02044 1.01993 1.21598 0.96016 0.96804 0.99348 1.21934 1.01279 0.95587 1.01779 1.21288 0.75910 1.01573 0.97573 1.47326 1.05757 1.22218 1.61926 1.22460 0.86472 0.93489 1.00408 1.22621 0.95591 0.85416 0.96593 0.88165 1.21985 0.88778 0.95987 0.94771 1.48002 1.05567 1.15197 1.66937 1.20427 0.82356 0.88157 0.76603 1.90696 1.81999 1.22304 1.43622 1.23570 1.00556 1.01642 1.04524 1.85414 0.90449 1.21951 1.85511 1.22894 0.93223 1.01675 1.50550 0.90826 1.24998 0.97280 0.96582 0.94733 1.70026 1.12866 1.24279 1.43057 0.86112 0.80003 0.81028 0.78325 1.19578 1.20554 1.20561 1.22205 1.00844 0.84595 0.95529 1.22001 0.87744 0.91663 0.97153 1.47441 1.05247 1.15912 1.68040 1.15720 0.81486 0.82630 0.79444 1.90918 1.71763 1.35309 1.48450 0.92527 0.92365 0.92408 0.90662 0.92699 0.92616 0.92405 0.89927 0.90238 0.89801 0.89374 0.87269 0.90943 0.89106 0.89090 0.92204 0.87518 0.90803 0.90452 0.87991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.19 37.16 0.34 -0.45 16 2 C -0.12 -0.83 3.13 -90.62 -0.28 -1.11 16 3 C -0.15 -0.89 8.82 37.16 0.33 -0.57 16 4 C 0.16 1.18 5.41 -4.04 -0.02 1.15 16 5 N -0.63 -5.84 2.73 -178.95 -0.49 -6.33 16 6 C 0.10 0.67 6.80 -3.29 -0.02 0.64 16 7 C 0.10 0.94 4.10 -66.64 -0.27 0.67 16 8 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 9 C 0.11 1.14 5.89 -3.53 -0.02 1.11 16 10 N -0.62 -8.00 2.92 -172.29 -0.50 -8.50 16 11 C 0.54 9.40 7.70 -10.98 -0.08 9.31 16 12 O -0.51 -10.83 15.22 5.56 0.08 -10.75 16 13 C -0.15 -2.91 4.48 36.01 0.16 -2.74 16 14 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 15 C -0.54 -14.84 9.50 30.94 0.29 -14.55 16 16 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 17 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 18 N -0.87 -25.68 13.22 55.49 0.73 -24.95 16 19 Si 0.92 21.05 29.55 -169.99 -5.02 16.02 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 C 0.09 0.95 6.51 -3.50 -0.02 0.93 16 24 C 0.14 1.39 7.07 -3.17 -0.02 1.36 16 25 N -0.63 -6.91 3.05 -169.51 -0.52 -7.43 16 26 C 0.70 8.84 8.33 -88.43 -0.74 8.10 16 27 O -0.59 -9.52 17.19 5.29 0.09 -9.43 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.38 5.44 -51.93 -0.28 0.10 16 35 H 0.08 0.71 7.97 -51.93 -0.41 0.30 16 36 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.46 7.55 -51.93 -0.39 0.07 16 38 H 0.09 0.49 5.89 -51.93 -0.31 0.18 16 39 H 0.11 1.23 6.95 -51.93 -0.36 0.87 16 40 H 0.07 0.68 7.83 -51.93 -0.41 0.27 16 41 H 0.09 1.60 7.87 -51.92 -0.41 1.19 16 42 H 0.09 1.59 7.72 -51.92 -0.40 1.19 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.11 1.06 5.82 -51.93 -0.30 0.75 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.10 1.00 7.88 -51.92 -0.41 0.59 16 LS Contribution 386.66 15.07 5.83 5.83 Total: -1.00 -36.15 386.66 -9.92 -46.07 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -7.45 Total: -2.58 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -0.46 Total: 5.83 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -0.77 Total: -47.21 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: 0.18 Total: -20.17 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.15 -9.92 -46.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487514697.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.161 kcal (2) G-P(sol) polarization free energy of solvation -36.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds