Wall clock time and date at job start Sat Apr 11 2020 06:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.46582 * 2 1 4 4 C 1.53003 * 109.47022 * 120.00011 * 2 1 3 5 5 N 1.46500 * 109.46840 * 174.99968 * 4 2 1 6 6 C 1.47171 * 125.40493 * 270.02331 * 5 4 2 7 7 C 1.53737 * 103.86114 * 177.86531 * 6 5 4 8 8 H 1.09002 * 111.52273 * 245.71929 * 7 6 5 9 9 C 1.53360 * 111.10175 * 120.72665 * 7 6 5 10 10 N 1.45440 * 108.94134 * 200.31483 * 9 7 6 11 11 C 1.34782 * 119.73211 * 236.85004 * 10 9 7 12 12 O 1.21274 * 119.99637 * 359.37769 * 11 10 9 13 13 C 1.50698 * 120.00147 * 179.38342 * 11 10 9 14 14 S 1.80996 * 109.47063 * 180.02562 * 13 11 10 15 15 C 1.76204 * 99.99946 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00129 * 359.97438 * 15 14 13 17 17 C 1.38794 * 119.99974 * 179.97438 * 15 14 13 18 18 N 1.31631 * 120.00034 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00209 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46948 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47363 * 119.99849 * 19 17 15 22 22 H 1.48501 * 109.47238 * 240.00162 * 19 17 15 23 23 C 1.46826 * 120.13578 * 56.23317 * 10 9 7 24 24 C 1.53709 * 109.05378 * 304.27256 * 23 10 9 25 25 N 1.47043 * 107.36922 * 46.17761 * 24 23 10 26 26 C 1.33404 * 128.05910 * 125.52659 * 25 24 23 27 27 O 1.21590 * 123.14345 * 9.38389 * 26 25 24 28 28 H 1.08995 * 109.46915 * 299.99614 * 1 2 3 29 29 H 1.08992 * 109.47060 * 60.00225 * 1 2 3 30 30 H 1.09005 * 109.46878 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46733 * 239.99982 * 2 1 3 32 32 H 1.08998 * 109.47278 * 299.99243 * 3 2 1 33 33 H 1.08995 * 109.47181 * 60.00548 * 3 2 1 34 34 H 1.09003 * 109.46440 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47354 * 55.00127 * 4 2 1 36 36 H 1.09001 * 109.47123 * 295.00058 * 4 2 1 37 37 H 1.08996 * 110.55005 * 59.26899 * 6 5 4 38 38 H 1.09004 * 110.54702 * 296.45498 * 6 5 4 39 39 H 1.09002 * 109.74559 * 318.83062 * 9 7 6 40 40 H 1.09007 * 109.74183 * 79.54600 * 9 7 6 41 41 H 1.09004 * 109.46579 * 299.99948 * 13 11 10 42 42 H 1.08996 * 109.47759 * 59.99491 * 13 11 10 43 43 H 0.97003 * 119.99832 * 180.02562 * 18 17 15 44 44 H 1.09004 * 109.54019 * 184.40410 * 23 10 9 45 45 H 1.08996 * 109.54234 * 64.14875 * 23 10 9 46 46 H 1.08998 * 109.87930 * 286.71012 * 24 23 10 47 47 H 1.09006 * 109.87510 * 165.63992 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 7 3.5001 -0.8264 1.1906 6 6 4.2513 -1.9396 0.5886 7 6 5.7219 -1.5212 0.7493 8 1 6.1945 -1.3419 -0.2164 9 6 6.5026 -2.5527 1.5729 10 7 7.7014 -1.9233 2.1039 11 6 8.9110 -2.4502 1.8285 12 8 8.9959 -3.4516 1.1497 13 6 10.1580 -1.7950 2.3640 14 16 11.6104 -2.7309 1.8250 15 6 12.8866 -1.7712 2.5700 16 1 12.6351 -0.8959 3.1506 17 6 14.2151 -2.1401 2.4108 18 7 14.5217 -3.2065 1.7028 19 14 15.5681 -1.1223 3.2000 20 1 14.9647 0.0172 3.9367 21 1 16.3379 -1.9702 4.1454 22 1 16.4773 -0.6051 2.1460 23 6 7.5953 -0.7110 2.9255 24 6 6.8273 0.3629 2.1384 25 7 5.6429 -0.2839 1.5543 26 6 4.3644 0.0768 1.6770 27 8 4.0153 1.1262 2.1823 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6055 -1.7198 1.2952 36 1 1.7517 -0.1583 2.1370 37 1 3.9970 -2.0469 -0.4658 38 1 4.0566 -2.8676 1.1265 39 1 5.8933 -2.8929 2.4102 40 1 6.7699 -3.4010 0.9426 41 1 10.2230 -0.7745 1.9864 42 1 10.1202 -1.7775 3.4532 43 1 15.4502 -3.4645 1.5918 44 1 8.5935 -0.3439 3.1643 45 1 7.0599 -0.9406 3.8467 46 1 7.4589 0.7643 1.3460 47 1 6.5187 1.1645 2.8095 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487514698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:58 Heat of formation + Delta-G solvation = -39.213452 kcal Electronic energy + Delta-G solvation = -27936.503746 eV Core-core repulsion = 24053.334930 eV Total energy + Delta-G solvation = -3883.168816 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.70848 -39.62563 -37.32962 -36.74760 -35.50169 -33.40255 -32.46991 -32.01265 -29.66877 -28.48360 -27.42744 -27.14404 -25.57725 -24.87901 -23.71520 -21.99448 -20.86819 -20.25441 -18.89035 -17.76485 -17.30680 -17.07990 -16.65319 -16.20926 -15.77242 -15.46251 -15.21899 -14.84136 -14.72570 -14.62091 -14.43543 -14.09125 -13.79086 -13.54604 -13.33066 -13.26628 -12.97283 -12.71474 -12.55120 -12.35784 -12.28076 -11.99057 -11.98694 -11.74561 -11.58636 -11.45938 -11.22251 -11.10120 -11.06129 -11.03381 -10.78596 -10.24990 -9.84093 -9.54589 -9.44206 -9.11406 -8.96002 -8.38905 -8.28398 -6.55610 -6.26003 -3.97127 2.05932 2.81420 2.86158 2.99595 3.19076 3.22304 3.28273 3.39735 3.50001 4.12285 4.15834 4.25913 4.35921 4.48217 4.55660 4.72037 4.75169 4.83951 4.87667 4.93122 5.03366 5.09562 5.11036 5.19873 5.22058 5.33946 5.36830 5.40480 5.45595 5.52458 5.54539 5.61840 5.64762 5.66351 5.76397 5.78226 5.87483 5.94337 6.02821 6.13747 6.43419 6.47265 6.56294 7.31910 7.38033 7.55993 8.31142 8.37405 8.39953 9.19728 10.81419 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030755 B = 0.002145 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.215172 B =13051.624787 C =13615.062507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.138 4.138 4 C 0.157 3.843 5 N -0.635 5.635 6 C 0.102 3.898 7 C 0.103 3.897 8 H 0.099 0.901 9 C 0.109 3.891 10 N -0.618 5.618 11 C 0.535 3.465 12 O -0.512 6.512 13 C -0.153 4.153 14 S -0.060 6.060 15 C -0.535 4.535 16 H 0.074 0.926 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.093 3.907 24 C 0.137 3.863 25 N -0.630 5.630 26 C 0.705 3.295 27 O -0.583 6.583 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.268 0.732 44 H 0.106 0.894 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.393 5.055 -1.583 26.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 C -0.196 4.196 4 C 0.035 3.965 5 N -0.373 5.373 6 C -0.023 4.023 7 C -0.002 4.002 8 H 0.117 0.883 9 C -0.016 4.016 10 N -0.354 5.354 11 C 0.323 3.677 12 O -0.386 6.386 13 C -0.303 4.303 14 S 0.167 5.833 15 C -0.683 4.683 16 H 0.092 0.908 17 C -0.136 4.136 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.032 4.032 24 C 0.014 3.986 25 N -0.368 5.368 26 C 0.407 3.593 27 O -0.461 6.461 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.128 0.872 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.124 0.876 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -26.325 4.104 -2.314 26.743 hybrid contribution 0.841 1.738 1.176 2.261 sum -25.484 5.843 -1.137 26.170 Atomic orbital electron populations 1.21773 0.94485 1.01766 1.02236 1.21582 0.95886 0.97563 0.98528 1.21765 1.01589 0.94962 1.01265 1.21316 0.75780 1.00799 0.98616 1.47264 1.05644 1.21886 1.62480 1.22287 0.88895 0.91154 0.99921 1.22644 0.95616 0.85822 0.96135 0.88264 1.21644 0.86190 0.95623 0.98125 1.47593 1.05848 1.28733 1.53183 1.20442 0.83810 0.84049 0.79353 1.90695 1.85840 1.24562 1.37462 1.23567 0.98190 1.04421 1.04129 1.85414 0.92549 1.36511 1.68871 1.22893 0.92655 1.14744 1.38046 0.90825 1.24996 0.98081 0.95407 0.95109 1.70026 1.19058 1.23685 1.37459 0.86112 0.80747 0.79677 0.78930 1.19579 1.20561 1.20555 1.22214 1.02544 0.84838 0.93565 1.21931 0.84038 0.94874 0.97756 1.47358 1.05543 1.28860 1.55076 1.15619 0.81072 0.83495 0.79101 1.90924 1.79916 1.23761 1.51489 0.92407 0.92358 0.92582 0.91169 0.93435 0.92386 0.92547 0.90280 0.89871 0.89707 0.89730 0.91305 0.87240 0.89095 0.89095 0.92203 0.87592 0.90769 0.90443 0.87941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.19 37.16 0.34 -0.43 16 2 C -0.12 -0.81 3.13 -90.61 -0.28 -1.09 16 3 C -0.14 -1.28 8.27 37.16 0.31 -0.98 16 4 C 0.16 1.15 5.44 -4.04 -0.02 1.13 16 5 N -0.63 -5.78 2.80 -179.05 -0.50 -6.28 16 6 C 0.10 0.70 7.31 -3.29 -0.02 0.68 16 7 C 0.10 0.94 4.12 -66.64 -0.27 0.67 16 8 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 9 C 0.11 1.15 5.77 -4.43 -0.03 1.12 16 10 N -0.62 -7.97 2.90 -173.60 -0.50 -8.47 16 11 C 0.54 9.38 7.69 -10.98 -0.08 9.30 16 12 O -0.51 -10.82 15.18 5.56 0.08 -10.73 16 13 C -0.15 -2.91 4.48 36.00 0.16 -2.75 16 14 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 15 C -0.54 -14.84 9.50 30.94 0.29 -14.55 16 16 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 17 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 18 N -0.87 -25.68 13.22 55.49 0.73 -24.95 16 19 Si 0.92 21.04 29.55 -169.99 -5.02 16.02 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 C 0.09 0.96 6.50 -3.50 -0.02 0.93 16 24 C 0.14 1.37 7.09 -3.38 -0.02 1.35 16 25 N -0.63 -6.84 2.99 -169.91 -0.51 -7.35 16 26 C 0.70 8.57 7.07 -88.70 -0.63 7.94 16 27 O -0.58 -8.99 15.71 5.29 0.08 -8.90 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.66 6.07 -51.93 -0.32 0.35 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.72 7.95 -51.93 -0.41 0.30 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.46 7.62 -51.93 -0.40 0.06 16 39 H 0.07 0.66 7.90 -51.93 -0.41 0.25 16 40 H 0.11 1.25 6.91 -51.92 -0.36 0.89 16 41 H 0.09 1.58 7.72 -51.91 -0.40 1.18 16 42 H 0.09 1.60 7.87 -51.92 -0.41 1.20 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.11 1.05 5.82 -51.93 -0.30 0.75 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.10 1.00 7.84 -51.93 -0.41 0.59 16 LS Contribution 386.66 15.07 5.83 5.83 Total: -1.00 -35.74 386.66 -10.01 -45.75 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -7.61 Total: -2.40 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -0.38 Total: 5.28 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -0.78 Total: -47.05 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: 0.17 Total: -19.64 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.74 -10.01 -45.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487514698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.536 kcal (2) G-P(sol) polarization free energy of solvation -35.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds