Wall clock time and date at job start Sat Apr 11 2020 06:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47272 * 2 1 4 4 N 1.46496 * 109.47343 * 120.00145 * 2 1 3 5 5 C 1.34948 * 126.03884 * 275.00232 * 4 2 1 6 6 C 1.35311 * 107.74985 * 180.02562 * 5 4 2 7 7 S 1.76193 * 126.04220 * 179.97438 * 6 5 4 8 8 O 1.42105 * 106.40403 * 203.54033 * 7 6 5 9 9 O 1.42098 * 106.40145 * 336.45962 * 7 6 5 10 10 N 1.65606 * 107.21910 * 90.00144 * 7 6 5 11 11 C 1.46923 * 120.62553 * 269.71992 * 10 7 6 12 12 C 1.52760 * 109.00861 * 233.58205 * 11 10 7 13 13 C 1.53046 * 109.38256 * 305.58983 * 12 11 10 14 14 C 1.52996 * 109.44823 * 181.25114 * 13 12 11 15 15 C 1.50697 * 109.47112 * 64.93986 * 14 13 12 16 16 H 1.08004 * 120.00434 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00384 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00269 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99525 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47085 * 90.00317 * 19 17 15 21 21 H 1.48501 * 109.46870 * 209.99783 * 19 17 15 22 22 H 1.48502 * 109.47118 * 329.99862 * 19 17 15 23 23 C 1.53042 * 109.53591 * 61.23964 * 13 12 11 24 24 C 1.46921 * 120.63289 * 89.99915 * 10 7 6 25 25 C 1.39876 * 107.91802 * 0.25859 * 6 5 4 26 26 N 1.30837 * 108.20057 * 359.55601 * 25 6 5 27 27 H 1.09000 * 109.46843 * 60.00432 * 1 2 3 28 28 H 1.08997 * 109.46624 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46729 * 300.00372 * 1 2 3 30 30 H 1.09006 * 109.46786 * 239.99911 * 2 1 3 31 31 H 1.09002 * 109.47364 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46961 * 299.99921 * 3 2 1 33 33 H 1.08994 * 109.47135 * 59.99847 * 3 2 1 34 34 H 1.08002 * 126.12315 * 359.97438 * 5 4 2 35 35 H 1.09001 * 109.59343 * 353.42265 * 11 10 7 36 36 H 1.09010 * 109.58634 * 113.84364 * 11 10 7 37 37 H 1.09006 * 109.56563 * 185.55777 * 12 11 10 38 38 H 1.09001 * 109.35973 * 65.50306 * 12 11 10 39 39 H 1.08998 * 109.46354 * 301.21868 * 13 12 11 40 40 H 1.08999 * 109.47426 * 184.93860 * 14 13 12 41 41 H 1.09004 * 109.47658 * 304.93964 * 14 13 12 42 42 H 0.97002 * 119.99863 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.49686 * 178.67995 * 23 13 12 44 44 H 1.09006 * 109.52432 * 58.60089 * 23 13 12 45 45 H 1.08997 * 109.58689 * 246.15965 * 24 10 7 46 46 H 1.08998 * 109.58450 * 6.44081 * 24 10 7 47 47 H 1.07997 * 125.89725 * 179.73769 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1934 -0.1393 2.4154 6 6 2.6572 -1.1050 3.2420 7 16 3.0507 -0.9082 4.9481 8 8 3.9782 -1.9364 5.2672 9 8 3.3250 0.4728 5.1399 10 7 1.6748 -1.2357 5.8095 11 6 0.7256 -0.1640 6.1398 12 6 0.4767 -0.1668 7.6470 13 6 0.0268 -1.5625 8.0850 14 6 -0.2529 -1.5589 9.5891 15 6 -1.4206 -0.6521 9.8808 16 1 -1.9143 -0.1308 9.0739 17 6 -1.8596 -0.4887 11.1776 18 7 -2.8790 0.3023 11.4320 19 14 -1.0063 -1.3908 12.5731 20 1 0.0972 -0.5508 13.1040 21 1 -1.9844 -1.6654 13.6562 22 1 -0.4534 -2.6734 12.0685 23 6 1.1298 -2.5768 7.7739 24 6 1.3832 -2.6024 6.2633 25 6 2.7751 -2.2856 2.5011 26 7 2.3867 -2.0398 1.2761 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6768 1.9563 0.8899 34 1 1.9990 0.8887 2.6831 35 1 1.1421 0.7980 5.8413 36 1 -0.2153 -0.3352 5.6166 37 1 -0.2997 0.5587 7.8901 38 1 1.3980 0.0981 8.1658 39 1 -0.8809 -1.8368 7.5475 40 1 -0.4882 -2.5713 9.9174 41 1 0.6278 -1.1998 10.1217 42 1 -3.1875 0.4175 12.3444 43 1 0.8183 -3.5667 8.1074 44 1 2.0452 -2.2899 8.2916 45 1 0.4972 -2.9764 5.7504 46 1 2.2327 -3.2492 6.0441 47 1 3.1235 -3.2365 2.8763 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516056343.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:06 Heat of formation + Delta-G solvation = -12.330879 kcal Electronic energy + Delta-G solvation = -28326.744398 eV Core-core repulsion = 24444.741297 eV Total energy + Delta-G solvation = -3882.003100 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.69005 -38.33980 -37.16061 -36.31890 -35.72936 -33.96008 -31.97114 -30.87952 -30.73940 -30.46522 -28.18265 -27.94467 -24.14514 -23.90669 -22.92393 -22.04048 -21.09203 -20.54659 -19.57752 -18.93003 -17.88243 -17.41732 -16.64915 -15.96908 -15.87219 -15.71582 -15.29735 -14.63760 -14.35080 -14.32670 -13.97685 -13.69974 -13.60291 -13.47196 -13.36039 -13.09295 -12.90344 -12.83169 -12.45113 -12.31116 -12.16637 -12.04265 -11.98368 -11.77426 -11.71761 -11.60783 -11.41256 -10.96771 -10.84793 -10.77562 -10.55140 -10.28937 -9.93288 -9.85010 -9.63451 -9.52554 -9.46781 -9.01978 -8.70434 -8.50650 -6.01794 -3.98693 0.49333 1.27158 1.95498 2.04754 3.16628 3.33621 3.41151 3.44964 3.80311 3.92203 4.12953 4.21585 4.37951 4.41048 4.48283 4.62350 4.86044 4.89641 4.92034 5.05184 5.13685 5.17793 5.24721 5.31078 5.34175 5.42922 5.45039 5.53471 5.55330 5.68745 5.82102 5.83762 5.99339 6.08240 6.15033 6.37607 6.41094 6.45865 6.64312 6.68508 6.89231 6.93284 7.07879 7.13019 7.32296 7.49102 7.83436 8.56710 9.03144 9.61813 11.11482 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018549 B = 0.002741 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.191963 B =10214.316193 C =10892.964058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.146 3.854 3 C -0.171 4.171 4 N -0.355 5.355 5 C 0.178 3.822 6 C -0.815 4.815 7 S 2.721 3.279 8 O -0.961 6.961 9 O -0.964 6.964 10 N -0.993 5.993 11 C 0.118 3.882 12 C -0.118 4.118 13 C -0.070 4.070 14 C -0.011 4.011 15 C -0.514 4.514 16 H 0.073 0.927 17 C 0.065 3.935 18 N -0.906 5.906 19 Si 0.878 3.122 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.266 1.266 23 C -0.130 4.130 24 C 0.121 3.879 25 C 0.132 3.868 26 N -0.295 5.295 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.189 0.811 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.015 0.985 41 H 0.011 0.989 42 H 0.262 0.738 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.330 -0.963 -24.469 26.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.045 3.955 3 C -0.229 4.229 4 N -0.133 5.133 5 C 0.024 3.976 6 C -0.912 4.912 7 S 2.810 3.190 8 O -0.951 6.951 9 O -0.954 6.954 10 N -0.832 5.832 11 C -0.007 4.007 12 C -0.157 4.157 13 C -0.089 4.089 14 C -0.048 4.048 15 C -0.552 4.552 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.545 5.545 19 Si 0.705 3.295 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.190 1.190 23 C -0.169 4.169 24 C -0.004 4.004 25 C -0.057 4.057 26 N -0.113 5.113 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.206 0.794 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.034 0.966 41 H 0.030 0.970 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.105 0.895 47 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 9.767 -1.090 -25.399 27.234 hybrid contribution -0.075 -0.220 1.063 1.088 sum 9.692 -1.310 -24.336 26.227 Atomic orbital electron populations 1.22265 0.92851 1.03710 1.03668 1.21496 0.95410 0.93046 0.85576 1.22277 1.02623 0.93610 1.04360 1.49462 1.47666 1.07571 1.08605 1.22379 0.91732 0.99047 0.84412 1.31869 1.30872 1.01103 1.27378 1.01007 0.72578 0.73209 0.72244 1.93540 1.59231 1.59129 1.83227 1.93545 1.83208 1.33125 1.85548 1.57623 1.41747 1.15852 1.68022 1.21526 0.92094 0.88681 0.98410 1.21794 1.02260 0.99209 0.92427 1.20967 0.96041 0.93008 0.98871 1.19637 0.96878 0.97023 0.91298 1.21149 1.13670 1.26381 0.94021 0.90856 1.25029 0.94761 0.94945 0.98834 1.69910 1.26230 1.38117 1.20233 0.86809 0.79475 0.81040 0.82127 1.20384 1.21591 1.19022 1.22018 1.00372 1.00550 0.93978 1.21486 1.01393 0.81109 0.96385 1.23527 0.94599 0.97839 0.89752 1.77405 1.20646 0.92697 1.20533 0.89992 0.91354 0.91441 0.87465 0.91177 0.89381 0.91024 0.79431 0.89630 0.91779 0.89252 0.92163 0.91778 0.96624 0.97025 0.92852 0.91135 0.91817 0.91673 0.89531 0.78648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 9.52 37.16 0.35 -0.51 16 2 C 0.15 0.88 3.93 -67.93 -0.27 0.61 16 3 C -0.17 -0.70 8.83 37.16 0.33 -0.37 16 4 N -0.36 -3.38 3.53 -54.86 -0.19 -3.57 16 5 C 0.18 1.74 10.33 -17.22 -0.18 1.56 16 6 C -0.81 -9.28 6.17 -40.01 -0.25 -9.52 16 7 S 2.72 36.29 5.87 -107.50 -0.63 35.66 16 8 O -0.96 -14.85 16.46 -57.17 -0.94 -15.79 16 9 O -0.96 -14.86 16.43 -57.17 -0.94 -15.80 16 10 N -0.99 -13.15 3.30 -113.77 -0.37 -13.52 16 11 C 0.12 1.61 6.45 -3.93 -0.03 1.58 16 12 C -0.12 -2.04 5.17 -26.83 -0.14 -2.18 16 13 C -0.07 -1.29 2.10 -90.58 -0.19 -1.48 16 14 C -0.01 -0.25 3.52 -27.89 -0.10 -0.35 16 15 C -0.51 -14.05 8.94 -34.44 -0.31 -14.36 16 16 H 0.07 2.12 7.30 -52.48 -0.38 1.74 16 17 C 0.07 1.86 5.47 -17.82 -0.10 1.77 16 18 N -0.91 -27.54 13.96 55.43 0.77 -26.76 16 19 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 23 C -0.13 -2.00 5.36 -26.61 -0.14 -2.14 16 24 C 0.12 1.55 6.48 -3.71 -0.02 1.53 16 25 C 0.13 1.48 11.81 -17.36 -0.21 1.27 16 26 N -0.29 -3.42 12.58 30.63 0.39 -3.03 16 27 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.20 8.14 -51.92 -0.42 -0.23 16 33 H 0.07 0.28 7.16 -51.93 -0.37 -0.10 16 34 H 0.19 1.33 7.26 -52.49 -0.38 0.95 16 35 H 0.09 1.08 6.91 -51.93 -0.36 0.72 16 36 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 37 H 0.09 1.70 6.91 -51.93 -0.36 1.34 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 41 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 1.01 6.92 -51.93 -0.36 0.65 16 47 H 0.20 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 385.72 15.07 5.81 5.81 Total: -1.00 -35.43 385.72 -9.66 -45.09 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -7.64 Total: -2.46 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -1.24 Total: -22.59 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.59 Total: -46.89 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -1.88 Total: -31.59 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Atomic # 16 Polarization: 36.29 SS G_CDS: -0.63 Total: 35.66 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.43 -9.66 -45.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516056343.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.755 kcal (2) G-P(sol) polarization free energy of solvation -35.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds