Wall clock time and date at job start Sat Apr 11 2020 06:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47272 * 2 1 4 4 N 1.46496 * 109.47343 * 120.00145 * 2 1 3 5 5 C 1.34948 * 126.03884 * 275.00232 * 4 2 1 6 6 C 1.35311 * 107.74985 * 180.02562 * 5 4 2 7 7 S 1.76193 * 126.04220 * 179.97438 * 6 5 4 8 8 O 1.42105 * 106.40403 * 203.54033 * 7 6 5 9 9 O 1.42098 * 106.40145 * 336.45962 * 7 6 5 10 10 N 1.65606 * 107.21910 * 90.00144 * 7 6 5 11 11 C 1.46923 * 120.62553 * 269.71992 * 10 7 6 12 12 C 1.52760 * 109.00861 * 233.58205 * 11 10 7 13 13 C 1.53046 * 109.38256 * 305.58983 * 12 11 10 14 14 C 1.52996 * 109.44823 * 181.25114 * 13 12 11 15 15 C 1.50697 * 109.47112 * 64.93986 * 14 13 12 16 16 H 1.08004 * 120.00434 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00384 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00269 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99525 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47085 * 90.00317 * 19 17 15 21 21 H 1.48501 * 109.46870 * 209.99783 * 19 17 15 22 22 H 1.48502 * 109.47118 * 329.99862 * 19 17 15 23 23 C 1.53042 * 109.53591 * 61.23964 * 13 12 11 24 24 C 1.46921 * 120.63289 * 89.99915 * 10 7 6 25 25 C 1.39876 * 107.91802 * 0.25859 * 6 5 4 26 26 N 1.30837 * 108.20057 * 359.55601 * 25 6 5 27 27 H 1.09000 * 109.46843 * 60.00432 * 1 2 3 28 28 H 1.08997 * 109.46624 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46729 * 300.00372 * 1 2 3 30 30 H 1.09006 * 109.46786 * 239.99911 * 2 1 3 31 31 H 1.09002 * 109.47364 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46961 * 299.99921 * 3 2 1 33 33 H 1.08994 * 109.47135 * 59.99847 * 3 2 1 34 34 H 1.08002 * 126.12315 * 359.97438 * 5 4 2 35 35 H 1.09001 * 109.59343 * 353.42265 * 11 10 7 36 36 H 1.09010 * 109.58634 * 113.84364 * 11 10 7 37 37 H 1.09006 * 109.56563 * 185.55777 * 12 11 10 38 38 H 1.09001 * 109.35973 * 65.50306 * 12 11 10 39 39 H 1.08998 * 109.46354 * 301.21868 * 13 12 11 40 40 H 1.08999 * 109.47426 * 184.93860 * 14 13 12 41 41 H 1.09004 * 109.47658 * 304.93964 * 14 13 12 42 42 H 0.97002 * 119.99863 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.49686 * 178.67995 * 23 13 12 44 44 H 1.09006 * 109.52432 * 58.60089 * 23 13 12 45 45 H 1.08997 * 109.58689 * 246.15965 * 24 10 7 46 46 H 1.08998 * 109.58450 * 6.44081 * 24 10 7 47 47 H 1.07997 * 125.89725 * 179.73769 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1934 -0.1393 2.4154 6 6 2.6572 -1.1050 3.2420 7 16 3.0507 -0.9082 4.9481 8 8 3.9782 -1.9364 5.2672 9 8 3.3250 0.4728 5.1399 10 7 1.6748 -1.2357 5.8095 11 6 0.7256 -0.1640 6.1398 12 6 0.4767 -0.1668 7.6470 13 6 0.0268 -1.5625 8.0850 14 6 -0.2529 -1.5589 9.5891 15 6 -1.4206 -0.6521 9.8808 16 1 -1.9143 -0.1308 9.0739 17 6 -1.8596 -0.4887 11.1776 18 7 -2.8790 0.3023 11.4320 19 14 -1.0063 -1.3908 12.5731 20 1 0.0972 -0.5508 13.1040 21 1 -1.9844 -1.6654 13.6562 22 1 -0.4534 -2.6734 12.0685 23 6 1.1298 -2.5768 7.7739 24 6 1.3832 -2.6024 6.2633 25 6 2.7751 -2.2856 2.5011 26 7 2.3867 -2.0398 1.2761 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6768 1.9563 0.8899 34 1 1.9990 0.8887 2.6831 35 1 1.1421 0.7980 5.8413 36 1 -0.2153 -0.3352 5.6166 37 1 -0.2997 0.5587 7.8901 38 1 1.3980 0.0981 8.1658 39 1 -0.8809 -1.8368 7.5475 40 1 -0.4882 -2.5713 9.9174 41 1 0.6278 -1.1998 10.1217 42 1 -3.1875 0.4175 12.3444 43 1 0.8183 -3.5667 8.1074 44 1 2.0452 -2.2899 8.2916 45 1 0.4972 -2.9764 5.7504 46 1 2.2327 -3.2492 6.0441 47 1 3.1235 -3.2365 2.8763 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516056343.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:05 Heat of formation + Delta-G solvation = -36.528036 kcal Electronic energy + Delta-G solvation = -28327.793665 eV Core-core repulsion = 24444.741297 eV Total energy + Delta-G solvation = -3883.052368 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.43816 -39.60601 -38.28194 -36.87186 -36.81927 -35.63005 -33.86042 -31.93069 -31.63931 -31.15887 -29.93051 -28.29123 -25.74735 -24.57659 -24.14192 -22.89918 -22.61783 -21.17535 -20.95879 -19.88613 -19.00506 -18.66000 -18.43035 -16.87136 -16.71072 -16.48313 -16.32993 -15.93843 -15.46175 -15.27407 -15.17834 -15.15295 -14.83008 -14.46474 -14.26714 -14.19063 -13.99049 -13.62594 -13.36527 -13.32165 -13.20987 -13.16534 -13.11379 -12.89336 -12.81061 -12.57196 -12.45472 -12.26339 -12.09783 -12.00644 -11.94634 -11.72096 -11.66933 -11.31687 -10.97855 -10.83704 -10.69551 -10.68780 -10.31621 -9.85281 -8.22580 -6.23339 -0.53475 0.51154 1.19923 1.33837 1.38206 1.39436 1.50778 2.16679 2.40502 2.87553 3.12983 3.13532 3.48802 3.66531 3.80735 3.82213 3.89785 4.01580 4.09284 4.10976 4.30511 4.34853 4.44282 4.49069 4.58228 4.58963 4.65775 4.67142 4.74486 4.82142 4.89014 4.91043 5.04821 5.10189 5.11675 5.15836 5.26411 5.29967 5.31580 5.36726 5.47256 5.56048 5.71372 5.80180 5.82144 5.83210 6.35768 6.38732 6.84356 7.40366 8.93704 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018549 B = 0.002741 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.191963 B =10214.316193 C =10892.964058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.137 3.863 3 C -0.168 4.168 4 N -0.351 5.351 5 C 0.179 3.821 6 C -0.823 4.823 7 S 2.738 3.262 8 O -0.984 6.984 9 O -0.988 6.988 10 N -0.995 5.995 11 C 0.125 3.875 12 C -0.118 4.118 13 C -0.068 4.068 14 C -0.011 4.011 15 C -0.513 4.513 16 H 0.042 0.958 17 C 0.002 3.998 18 N -0.953 5.953 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.288 1.288 22 H -0.247 1.247 23 C -0.128 4.128 24 C 0.121 3.879 25 C 0.126 3.874 26 N -0.318 5.318 27 H 0.105 0.895 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.062 0.938 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.213 0.787 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.018 0.982 41 H 0.009 0.991 42 H 0.263 0.737 43 H 0.084 0.916 44 H 0.056 0.944 45 H 0.085 0.915 46 H 0.103 0.897 47 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.271 -1.704 -26.090 28.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 C -0.226 4.226 4 N -0.129 5.129 5 C 0.024 3.976 6 C -0.924 4.924 7 S 2.830 3.170 8 O -0.974 6.974 9 O -0.978 6.978 10 N -0.833 5.833 11 C 0.000 4.000 12 C -0.158 4.158 13 C -0.086 4.086 14 C -0.048 4.048 15 C -0.551 4.551 16 H 0.060 0.940 17 C -0.194 4.194 18 N -0.595 5.595 19 Si 0.766 3.234 20 H -0.198 1.198 21 H -0.214 1.214 22 H -0.171 1.171 23 C -0.167 4.167 24 C -0.003 4.003 25 C -0.064 4.064 26 N -0.137 5.137 27 H 0.124 0.876 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.129 0.871 31 H 0.081 0.919 32 H 0.129 0.871 33 H 0.094 0.906 34 H 0.230 0.770 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.036 0.964 41 H 0.028 0.972 42 H 0.072 0.928 43 H 0.102 0.898 44 H 0.075 0.925 45 H 0.104 0.896 46 H 0.121 0.879 47 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 10.724 -1.844 -27.023 29.132 hybrid contribution -0.422 0.080 1.443 1.506 sum 10.302 -1.764 -25.580 27.633 Atomic orbital electron populations 1.22250 0.92048 1.02936 1.04798 1.21857 0.96019 0.93926 0.84466 1.22306 1.02168 0.92332 1.05769 1.49782 1.46695 1.07002 1.09421 1.22800 0.90621 0.99864 0.84286 1.31492 1.32772 1.02011 1.26112 1.00191 0.72040 0.72156 0.72599 1.93505 1.60200 1.59669 1.84065 1.93510 1.83662 1.34391 1.86277 1.57555 1.41380 1.15892 1.68514 1.21425 0.93267 0.89653 0.95647 1.21719 1.00755 0.97943 0.95338 1.20887 0.97362 0.94728 0.95663 1.19627 0.94742 0.95702 0.94734 1.21495 1.14372 1.26105 0.93158 0.93962 1.25932 0.95573 0.96036 1.01833 1.70058 1.28267 1.40281 1.20875 0.85785 0.78386 0.80495 0.78727 1.19839 1.21387 1.17058 1.21974 0.98623 1.00007 0.96078 1.21572 1.03080 0.81139 0.94534 1.23861 0.94357 0.98505 0.89640 1.77362 1.21351 0.94123 1.20856 0.87593 0.93022 0.91589 0.87136 0.91884 0.87081 0.90550 0.77005 0.88428 0.89979 0.91884 0.93172 0.91997 0.96401 0.97223 0.92837 0.89796 0.92483 0.89634 0.87930 0.77162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.52 71.98 0.69 -0.65 16 2 C 0.14 1.36 3.93 44.99 0.18 1.54 16 3 C -0.17 -0.94 8.83 71.98 0.64 -0.31 16 4 N -0.35 -6.04 3.53 -327.49 -1.15 -7.19 16 5 C 0.18 3.14 10.33 83.54 0.86 4.00 16 6 C -0.82 -17.29 6.17 21.99 0.14 -17.16 16 7 S 2.74 68.90 5.87 -56.49 -0.33 68.57 16 8 O -0.98 -29.05 16.46 -128.00 -2.11 -31.16 16 9 O -0.99 -29.24 16.43 -128.00 -2.10 -31.35 16 10 N -0.99 -24.49 3.30 -513.86 -1.69 -26.19 16 11 C 0.12 3.25 6.45 86.22 0.56 3.81 16 12 C -0.12 -4.10 5.17 30.53 0.16 -3.95 16 13 C -0.07 -2.45 2.10 -10.77 -0.02 -2.47 16 14 C -0.01 -0.48 3.52 29.85 0.10 -0.38 16 15 C -0.51 -28.64 8.94 25.60 0.23 -28.41 16 16 H 0.04 2.55 7.30 -2.91 -0.02 2.53 16 17 C 0.00 0.13 5.47 84.66 0.46 0.60 16 18 N -0.95 -59.50 13.96 21.45 0.30 -59.20 16 19 Si 0.94 44.64 27.47 68.60 1.88 46.53 16 20 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 22 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 23 C -0.13 -3.68 5.36 30.67 0.16 -3.52 16 24 C 0.12 2.81 6.48 86.36 0.56 3.37 16 25 C 0.13 2.61 11.81 85.24 1.01 3.61 16 26 N -0.32 -6.92 12.58 -57.02 -0.72 -7.64 16 27 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.11 0.13 8.14 -2.38 -0.02 0.11 16 33 H 0.08 0.37 7.16 -2.39 -0.02 0.36 16 34 H 0.21 2.46 7.26 -2.91 -0.02 2.44 16 35 H 0.10 2.32 6.91 -2.39 -0.02 2.30 16 36 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.06 2.49 6.91 -2.38 -0.02 2.47 16 38 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 41 H 0.01 0.43 7.57 -2.38 -0.02 0.42 16 42 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 43 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 45 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.10 2.10 6.92 -2.39 -0.02 2.09 16 47 H 0.21 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -77.28 385.72 0.69 -76.60 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.89 Total: 10.93 kcal Atomic # 6 Polarization: -45.62 SS G_CDS: 5.72 Total: -39.90 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -3.27 Total: -100.22 kcal Atomic # 8 Polarization: -58.29 SS G_CDS: -4.21 Total: -62.50 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.53 kcal Atomic # 16 Polarization: 68.90 SS G_CDS: -0.33 Total: 68.57 kcal Total: -77.28 0.69 -76.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516056343.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.069 kcal (2) G-P(sol) polarization free energy of solvation -77.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds