Wall clock time and date at job start Sat Apr 11 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00214 * 2 1 4 4 N 1.46504 * 109.46947 * 124.99933 * 3 2 1 5 5 C 1.46499 * 119.99794 * 269.99872 * 4 3 2 6 6 C 1.50703 * 109.47126 * 270.00247 * 5 4 3 7 7 H 1.07993 * 120.00372 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99852 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99868 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00218 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47575 * 89.99500 * 10 8 6 12 12 H 1.48505 * 109.47041 * 209.99799 * 10 8 6 13 13 H 1.48501 * 109.46892 * 329.99398 * 10 8 6 14 14 C 1.34774 * 120.00240 * 90.00071 * 4 3 2 15 15 O 1.21588 * 119.99889 * 179.97438 * 14 4 3 16 16 N 1.34777 * 119.99906 * 0.02562 * 14 4 3 17 17 C 1.39885 * 119.99881 * 179.97438 * 16 14 4 18 18 N 1.33625 * 125.60179 * 0.02562 * 17 16 14 19 19 C 1.30869 * 109.77363 * 179.97438 * 18 17 16 20 20 N 1.34369 * 108.20412 * 0.02562 * 19 18 17 21 21 C 1.46491 * 126.76689 * 180.02562 * 20 19 18 22 22 C 1.50699 * 109.47773 * 124.99860 * 21 20 19 23 23 C 1.38234 * 119.99689 * 269.72821 * 22 21 20 24 24 C 1.38243 * 119.99937 * 179.76029 * 23 22 21 25 25 C 1.38236 * 119.99349 * 0.50303 * 24 23 22 26 26 C 1.38236 * 120.00358 * 359.74996 * 25 24 23 27 27 C 1.38229 * 120.00002 * 359.97438 * 26 25 24 28 28 N 1.31161 * 125.59955 * 179.71289 * 17 16 14 29 29 H 1.07996 * 119.99792 * 180.02562 * 1 2 3 30 30 H 1.07993 * 119.99523 * 359.97438 * 1 2 3 31 31 H 1.08006 * 119.99618 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47188 * 4.99826 * 3 2 1 33 33 H 1.08994 * 109.47153 * 244.99591 * 3 2 1 34 34 H 1.09003 * 109.47296 * 30.00377 * 5 4 3 35 35 H 1.09000 * 109.47462 * 150.00553 * 5 4 3 36 36 H 0.97001 * 119.99729 * 180.02562 * 9 8 6 37 37 H 0.97000 * 119.99501 * 0.27143 * 16 14 4 38 38 H 1.07996 * 125.89625 * 180.02562 * 19 18 17 39 39 H 1.09008 * 109.46826 * 244.99757 * 21 20 19 40 40 H 1.09004 * 109.47576 * 4.99211 * 21 20 19 41 41 H 1.08001 * 120.00305 * 359.97438 * 23 22 21 42 42 H 1.07999 * 120.00259 * 180.22746 * 24 23 22 43 43 H 1.07999 * 119.99449 * 179.72027 * 25 24 23 44 44 H 1.08003 * 119.99891 * 179.97438 * 26 25 24 45 45 H 1.07998 * 119.99932 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5589 1.8648 2.4249 6 6 2.8443 3.3436 2.4804 7 1 3.3041 3.8368 1.6369 8 6 2.5184 4.0667 3.6082 9 7 2.7680 5.3571 3.6569 10 14 1.7237 3.2134 5.0676 11 1 2.7795 2.7231 5.9896 12 1 0.8468 4.1735 5.7850 13 1 0.9129 2.0653 4.5884 14 6 4.2497 0.8660 0.9825 15 8 5.0219 0.8886 1.9215 16 7 4.6500 0.3761 -0.2075 17 6 5.9537 -0.1068 -0.3623 18 7 6.8905 -0.1364 0.5901 19 6 7.9942 -0.6501 0.1098 20 7 7.7844 -0.9645 -1.1796 21 6 8.7494 -1.5647 -2.1040 22 6 8.1638 -2.8207 -2.6961 23 6 8.3633 -4.0375 -2.0714 24 6 7.8219 -5.1890 -2.6119 25 6 7.0898 -5.1248 -3.7827 26 6 6.8948 -3.9087 -4.4103 27 6 7.4313 -2.7566 -3.8667 28 7 6.4556 -0.6104 -1.4645 29 1 -0.5399 -0.9353 0.0004 30 1 -0.5399 0.9353 0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6214 1.4025 -0.9313 34 1 1.4887 1.6966 2.5459 35 1 3.0989 1.3603 3.2260 36 1 2.5390 5.8657 4.4505 37 1 4.0354 0.3624 -0.9578 38 1 8.9146 -0.7961 0.6556 39 1 8.9758 -0.8579 -2.9024 40 1 9.6648 -1.8096 -1.5652 41 1 8.9392 -4.0882 -1.1591 42 1 7.9746 -6.1392 -2.1218 43 1 6.6707 -6.0250 -4.2074 44 1 6.3232 -3.8587 -5.3253 45 1 7.2793 -1.8065 -4.3573 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579911088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:40 Heat of formation + Delta-G solvation = 145.214268 kcal Electronic energy + Delta-G solvation = -28525.282203 eV Core-core repulsion = 24546.959572 eV Total energy + Delta-G solvation = -3978.322630 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.97623 -39.68203 -39.39324 -35.93991 -35.07548 -33.86753 -33.06206 -32.06280 -31.27317 -31.16543 -30.49269 -28.15761 -26.51444 -25.56678 -23.19914 -22.91281 -22.52451 -21.57681 -20.88433 -20.02795 -19.14648 -17.78801 -17.41857 -17.04713 -16.85092 -16.23836 -16.02637 -15.45988 -15.31094 -14.95762 -14.68739 -14.47929 -14.31218 -13.82576 -13.75797 -13.56299 -13.25257 -13.04168 -12.95349 -12.89273 -12.30401 -11.94853 -11.79782 -11.59013 -11.49460 -11.33642 -11.24806 -10.91697 -10.63287 -10.46806 -10.08778 -9.90506 -9.66527 -9.51427 -9.27276 -9.24933 -9.23790 -9.06325 -8.52567 -8.42549 -7.69218 -6.02562 -4.00822 0.85596 1.08399 1.72002 2.14535 2.37943 3.04104 3.11999 3.34997 3.40789 3.43277 3.52668 4.04758 4.13584 4.22155 4.33968 4.45518 4.61565 4.64778 4.67855 4.77345 4.96045 5.11088 5.14662 5.19165 5.28841 5.30515 5.33225 5.46714 5.58968 5.68250 5.71718 5.93056 6.09271 6.10683 6.16986 6.19237 6.40098 6.49644 6.63355 6.72157 6.77080 6.84575 6.92154 7.04151 7.24868 7.44071 7.67100 8.20685 8.53562 8.61252 9.01256 9.23560 9.57889 11.10909 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016015 B = 0.002545 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.909976 B =10998.927770 C =11983.945407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.173 4.173 3 C 0.136 3.864 4 N -0.598 5.598 5 C 0.234 3.766 6 C -0.527 4.527 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.898 5.898 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.265 1.265 14 C 0.701 3.299 15 O -0.525 6.525 16 N -0.645 5.645 17 C 0.477 3.523 18 N -0.509 5.509 19 C 0.264 3.736 20 N -0.382 5.382 21 C 0.177 3.823 22 C -0.109 4.109 23 C -0.100 4.100 24 C -0.125 4.125 25 C -0.112 4.112 26 C -0.124 4.124 27 C -0.082 4.082 28 N -0.347 5.347 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.033 0.967 35 H 0.039 0.961 36 H 0.264 0.736 37 H 0.413 0.587 38 H 0.219 0.781 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.274 -20.510 -17.332 28.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.192 4.192 3 C 0.012 3.988 4 N -0.333 5.333 5 C 0.113 3.887 6 C -0.566 4.566 7 H 0.093 0.907 8 C -0.130 4.130 9 N -0.537 5.537 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.190 1.190 14 C 0.401 3.599 15 O -0.395 6.395 16 N -0.303 5.303 17 C 0.107 3.893 18 N -0.239 5.239 19 C -0.034 4.034 20 N -0.175 5.175 21 C 0.055 3.945 22 C -0.110 4.110 23 C -0.119 4.119 24 C -0.143 4.143 25 C -0.130 4.130 26 C -0.142 4.142 27 C -0.101 4.101 28 N -0.184 5.184 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.251 0.749 38 H 0.235 0.765 39 H 0.113 0.887 40 H 0.127 0.873 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.362 -20.207 -16.745 27.863 hybrid contribution -0.514 -0.430 0.386 0.773 sum 8.848 -20.637 -16.359 27.781 Atomic orbital electron populations 1.23840 0.95770 1.01880 1.00212 1.23482 0.96559 0.99002 1.00193 1.20579 0.93290 0.95747 0.89220 1.47179 1.08779 1.63660 1.13678 1.19611 0.94746 0.94953 0.79348 1.21357 1.40932 0.91170 1.03144 0.90713 1.24833 0.95342 0.94713 0.98065 1.69903 1.47908 1.06626 1.29232 0.86869 0.79861 0.79638 0.83443 1.19852 1.21155 1.19001 1.15770 0.83246 0.78986 0.81934 1.91028 1.51790 1.58874 1.37821 1.42029 1.08626 1.65074 1.14595 1.20041 0.87382 0.94200 0.87683 1.70724 0.98973 1.23663 1.30506 1.26208 0.99247 0.94808 0.83142 1.50262 1.09080 1.48244 1.09931 1.20583 0.88706 0.92244 0.92984 1.19798 1.00823 0.94006 0.96338 1.21056 0.99504 0.92148 0.99181 1.21132 0.98417 0.98362 0.96412 1.21225 0.98203 0.97945 0.95623 1.21173 1.00059 0.92610 1.00350 1.21058 0.95428 0.98570 0.95005 1.78125 0.91839 1.28318 1.20095 0.88711 0.88099 0.87732 0.88629 0.91207 0.94923 0.94338 0.92627 0.74907 0.76505 0.88742 0.87287 0.86004 0.85952 0.86052 0.85875 0.85732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 14.32 29.01 0.42 -1.80 16 2 C -0.17 -2.40 9.85 -36.03 -0.35 -2.76 16 3 C 0.14 2.19 5.61 -5.19 -0.03 2.17 16 4 N -0.60 -12.78 2.44 -182.19 -0.44 -13.23 16 5 C 0.23 5.85 4.23 -5.19 -0.02 5.83 16 6 C -0.53 -15.39 9.94 -34.44 -0.34 -15.74 16 7 H 0.07 2.40 8.06 -52.49 -0.42 1.98 16 8 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 9 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 10 Si 0.87 21.93 27.47 -169.99 -4.67 17.26 16 11 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 14 C 0.70 15.71 8.24 -86.92 -0.72 14.99 16 15 O -0.53 -14.12 14.60 5.29 0.08 -14.04 16 16 N -0.64 -11.80 5.31 -17.22 -0.09 -11.89 16 17 C 0.48 8.74 8.81 -320.84 -2.83 5.91 16 18 N -0.51 -9.59 9.37 -14.92 -0.14 -9.73 16 19 C 0.26 3.37 12.61 -90.68 -1.14 2.22 16 20 N -0.38 -4.52 3.68 -63.82 -0.23 -4.75 16 21 C 0.18 1.29 6.67 -5.20 -0.03 1.25 16 22 C -0.11 -0.92 5.33 -104.63 -0.56 -1.47 16 23 C -0.10 -0.80 9.70 -39.58 -0.38 -1.18 16 24 C -0.13 -0.97 10.05 -39.58 -0.40 -1.36 16 25 C -0.11 -0.85 10.05 -39.58 -0.40 -1.25 16 26 C -0.12 -0.99 10.05 -39.59 -0.40 -1.39 16 27 C -0.08 -0.71 9.70 -39.59 -0.38 -1.10 16 28 N -0.35 -5.35 12.57 30.04 0.38 -4.97 16 29 H 0.09 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.10 1.21 7.84 -52.49 -0.41 0.80 16 31 H 0.10 1.42 8.06 -52.48 -0.42 1.00 16 32 H 0.10 1.58 7.72 -51.93 -0.40 1.18 16 33 H 0.07 0.96 6.36 -51.93 -0.33 0.63 16 34 H 0.03 0.78 7.13 -51.93 -0.37 0.41 16 35 H 0.04 1.04 6.85 -51.93 -0.36 0.68 16 36 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 37 H 0.41 6.19 6.55 -40.82 -0.27 5.92 16 38 H 0.22 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.09 0.59 8.09 -51.92 -0.42 0.17 16 40 H 0.11 0.41 8.03 -51.93 -0.42 -0.01 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 43 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 45 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 390.17 15.07 5.88 5.88 Total: -1.00 -39.62 390.17 -12.09 -51.71 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -5.95 Total: 4.70 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: -7.67 Total: 6.38 kcal Atomic # 7 Polarization: -72.12 SS G_CDS: 0.24 Total: -71.88 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.08 Total: -14.04 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -39.62 -12.09 -51.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579911088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.922 kcal (2) G-P(sol) polarization free energy of solvation -39.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds