Wall clock time and date at job start Sat Apr 11 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47094 * 2 1 4 4 C 1.50698 * 109.47255 * 239.99788 * 2 1 3 5 5 H 1.08001 * 119.99808 * 240.00019 * 4 2 1 6 6 C 1.37879 * 119.99969 * 59.99785 * 4 2 1 7 7 N 1.31513 * 119.99870 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99776 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47066 * 90.00485 * 8 6 4 10 10 H 1.48506 * 109.46942 * 209.99891 * 8 6 4 11 11 H 1.48491 * 109.47510 * 330.00262 * 8 6 4 12 12 C 1.53004 * 109.47068 * 119.99780 * 2 1 3 13 13 S 1.81398 * 109.47171 * 299.99936 * 12 2 1 14 14 O 1.42098 * 110.54240 * 68.37551 * 13 12 2 15 15 O 1.42101 * 110.54361 * 291.62553 * 13 12 2 16 16 N 1.65596 * 104.44933 * 180.02562 * 13 12 2 17 17 C 1.46931 * 120.62944 * 270.01983 * 16 13 12 18 18 C 1.53191 * 108.76527 * 126.35988 * 17 16 13 19 19 C 1.53046 * 109.30997 * 54.65907 * 18 17 16 20 20 C 1.53039 * 109.52798 * 298.61471 * 19 18 17 21 21 H 1.09000 * 109.49863 * 301.42271 * 20 19 18 22 22 C 1.50697 * 109.50029 * 181.32171 * 20 19 18 23 23 C 1.39871 * 125.89821 * 324.71998 * 22 20 19 24 24 C 1.35314 * 107.91658 * 179.86292 * 23 22 20 25 25 N 1.34945 * 107.75075 * 0.38914 * 24 23 22 26 26 H 0.96993 * 126.03820 * 179.75209 * 25 24 23 27 27 N 1.30837 * 125.89671 * 145.02200 * 22 20 19 28 28 C 1.46919 * 120.63444 * 90.00150 * 16 13 12 29 29 H 1.08998 * 109.47236 * 300.00211 * 1 2 3 30 30 H 1.08996 * 109.47090 * 60.00535 * 1 2 3 31 31 H 1.09005 * 109.46785 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47426 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46931 * 300.00086 * 3 2 1 34 34 H 1.08998 * 109.47704 * 60.00082 * 3 2 1 35 35 H 0.96998 * 120.00154 * 180.02562 * 7 6 4 36 36 H 1.09001 * 109.46997 * 180.02562 * 12 2 1 37 37 H 1.08991 * 109.47253 * 60.00216 * 12 2 1 38 38 H 1.08998 * 109.58959 * 246.15725 * 17 16 13 39 39 H 1.09003 * 109.58181 * 6.44208 * 17 16 13 40 40 H 1.08998 * 109.50939 * 294.70294 * 18 17 16 41 41 H 1.09003 * 109.48831 * 174.59930 * 18 17 16 42 42 H 1.09002 * 109.46115 * 178.59924 * 19 18 17 43 43 H 1.09004 * 109.45806 * 58.62809 * 19 18 17 44 44 H 1.07999 * 126.03870 * 359.97245 * 23 22 20 45 45 H 1.08002 * 126.12355 * 180.14584 * 24 23 22 46 46 H 1.08997 * 109.59005 * 113.84271 * 28 16 13 47 47 H 1.09002 * 109.70256 * 353.48508 * 28 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.3449 -2.1617 -4.4123 10 1 2.4873 -0.1404 -5.1120 11 1 3.6309 -1.7567 -3.7119 12 6 2.0400 -0.7212 1.2493 13 16 1.4354 0.1340 2.7304 14 8 0.0280 -0.0182 2.8544 15 8 2.0480 1.4101 2.8544 16 7 2.0541 -0.7399 3.9936 17 6 1.3020 -1.8655 4.5647 18 6 2.1987 -3.1075 4.5655 19 6 3.5044 -2.7886 5.2973 20 6 4.2393 -1.6632 4.5655 21 1 4.4401 -1.9675 3.5383 22 6 5.5403 -1.3718 5.2680 23 6 5.7578 -1.4296 6.6485 24 6 7.0505 -1.1040 6.8802 25 7 7.6283 -0.8408 5.6894 26 1 8.5510 -0.5771 5.5488 27 7 6.6600 -1.0158 4.6924 28 6 3.3658 -0.4047 4.5644 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 0.7089 1.1612 -3.4844 36 1 3.1300 -0.7208 1.2495 37 1 1.6767 -1.7488 1.2493 38 1 1.0070 -1.6269 5.5866 39 1 0.4133 -2.0541 3.9624 40 1 2.4189 -3.3981 3.5383 41 1 1.6871 -3.9250 5.0736 42 1 4.1340 -3.6781 5.3210 43 1 3.2818 -2.4741 6.3169 44 1 5.0240 -1.6900 7.3970 45 1 7.5325 -1.0587 7.8457 46 1 3.2391 -0.0470 5.5862 47 1 3.8414 0.3697 3.9625 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590743768.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:50 Heat of formation + Delta-G solvation = -3.245866 kcal Electronic energy + Delta-G solvation = -29226.682899 eV Core-core repulsion = 25345.073755 eV Total energy + Delta-G solvation = -3881.609144 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.40966 -38.50038 -36.56959 -36.22493 -35.25693 -33.47789 -31.93723 -31.61082 -30.18893 -29.81099 -26.63003 -25.67493 -25.19359 -24.50391 -23.97440 -21.74806 -20.98887 -19.48392 -19.12714 -18.41941 -18.22879 -17.34401 -15.94568 -15.88584 -15.35830 -15.00401 -14.81799 -14.73695 -14.45741 -14.33313 -13.89162 -13.78169 -13.44133 -13.10844 -12.99878 -12.92532 -12.55040 -12.46319 -11.99782 -11.80655 -11.48697 -11.42148 -11.12359 -11.07002 -11.04404 -10.90542 -10.88836 -10.76973 -10.63296 -10.46824 -10.32822 -10.23461 -10.05499 -9.71284 -9.60997 -9.45403 -8.93899 -8.83339 -8.56544 -8.36682 -5.99877 -4.11537 0.87815 1.71098 2.57523 2.67947 3.14698 3.28239 3.35382 3.37993 4.30666 4.37081 4.45236 4.53759 4.68144 4.76020 4.83232 4.91675 5.13210 5.20848 5.25425 5.29830 5.33332 5.47180 5.52776 5.68710 5.70201 5.72014 5.79862 5.83833 5.85904 5.98640 6.02463 6.25229 6.26737 6.41940 6.44296 6.74323 6.75240 6.84067 6.95021 7.07298 7.08576 7.35743 7.51148 7.54573 7.71510 8.01913 8.13647 8.37081 8.86982 9.53641 11.01455 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013544 B = 0.003546 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.845482 B = 7893.484883 C = 8764.058365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.082 3.918 3 C -0.163 4.163 4 C -0.500 4.500 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.582 4.582 13 S 2.592 3.408 14 O -0.962 6.962 15 O -0.962 6.962 16 N -1.007 6.007 17 C 0.119 3.881 18 C -0.138 4.138 19 C -0.103 4.103 20 C -0.027 4.027 21 H 0.093 0.907 22 C 0.088 3.912 23 C -0.265 4.265 24 C 0.054 3.946 25 N -0.480 5.480 26 H 0.438 0.562 27 N -0.286 5.286 28 C 0.136 3.864 29 H 0.027 0.973 30 H 0.095 0.905 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.095 0.905 34 H 0.027 0.973 35 H 0.262 0.738 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.148 0.852 45 H 0.175 0.825 46 H 0.072 0.928 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.734 -7.038 20.092 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.080 3.920 3 C -0.221 4.221 4 C -0.540 4.540 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.715 4.715 13 S 2.691 3.309 14 O -0.952 6.952 15 O -0.952 6.952 16 N -0.843 5.843 17 C -0.006 4.006 18 C -0.177 4.177 19 C -0.141 4.141 20 C -0.049 4.049 21 H 0.111 0.889 22 C -0.080 4.080 23 C -0.295 4.295 24 C -0.094 4.094 25 N -0.187 5.187 26 H 0.282 0.718 27 N -0.109 5.109 28 C 0.009 3.991 29 H 0.046 0.954 30 H 0.113 0.887 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.113 0.887 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.165 0.835 45 H 0.192 0.808 46 H 0.090 0.910 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.668 -5.869 19.007 21.699 hybrid contribution 1.033 -1.092 -0.315 1.536 sum 9.701 -6.961 18.691 22.180 Atomic orbital electron populations 1.22271 0.96949 1.00579 1.02288 1.17924 0.92776 0.92192 0.89131 1.22269 0.99733 0.97845 1.02263 1.20950 1.31581 1.12024 0.89399 0.92315 1.24936 0.94941 0.94972 0.98901 1.69803 1.36446 1.22573 1.23415 0.86548 0.79202 0.79377 0.82588 1.20663 1.21154 1.19954 1.30576 1.11292 1.12747 1.16925 1.05771 0.74645 0.75114 0.75338 1.93529 1.29383 1.86579 1.85727 1.93535 1.78113 1.37884 1.85669 1.58043 1.28540 1.47094 1.50585 1.21398 0.94134 0.85122 0.99970 1.21976 0.96099 0.97739 1.01845 1.21467 0.96005 0.97424 0.99233 1.19992 0.88158 0.96802 0.99959 0.88883 1.22189 0.94245 0.98514 0.93082 1.21419 0.96778 1.15273 0.95981 1.22582 0.94770 1.00694 0.91318 1.46376 1.12540 1.55560 1.04267 0.71813 1.77403 0.97898 1.22957 1.12670 1.21264 0.81896 0.95593 1.00362 0.95405 0.88678 0.94496 0.94484 0.88688 0.95407 0.92788 0.86441 0.86457 0.91306 0.88930 0.90970 0.90444 0.91460 0.91222 0.83468 0.80811 0.91007 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 7.78 37.16 0.29 -3.78 16 2 C 0.08 2.02 0.52 -155.66 -0.08 1.94 16 3 C -0.16 -4.12 7.77 37.16 0.29 -3.83 16 4 C -0.50 -13.32 8.01 -34.44 -0.28 -13.60 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.06 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -24.44 9.35 55.43 0.52 -23.92 16 8 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 C -0.58 -11.64 5.12 37.16 0.19 -11.45 16 13 S 2.59 49.54 4.45 -107.50 -0.48 49.07 16 14 O -0.96 -20.31 14.35 -57.54 -0.83 -21.14 16 15 O -0.96 -20.81 14.34 -57.54 -0.83 -21.63 16 16 N -1.01 -14.54 3.22 -113.52 -0.37 -14.90 16 17 C 0.12 1.39 6.32 -3.71 -0.02 1.36 16 18 C -0.14 -1.28 6.08 -26.61 -0.16 -1.44 16 19 C -0.10 -0.92 4.74 -26.69 -0.13 -1.05 16 20 C -0.03 -0.31 2.80 -91.65 -0.26 -0.57 16 21 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 22 C 0.09 1.02 6.13 -82.41 -0.51 0.51 16 23 C -0.27 -2.41 9.99 -40.01 -0.40 -2.81 16 24 C 0.05 0.39 11.99 -17.23 -0.21 0.19 16 25 N -0.48 -4.26 7.36 30.44 0.22 -4.03 16 26 H 0.44 2.49 8.96 -182.61 -1.64 0.85 16 27 N -0.29 -3.69 12.70 33.67 0.43 -3.26 16 28 C 0.14 1.79 5.58 -3.71 -0.02 1.76 16 29 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 30 H 0.09 2.55 6.07 -51.93 -0.32 2.24 16 31 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 2.57 6.07 -51.93 -0.32 2.25 16 34 H 0.03 0.67 5.46 -51.93 -0.28 0.38 16 35 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.12 2.19 8.14 -51.92 -0.42 1.77 16 37 H 0.12 2.11 8.14 -51.93 -0.42 1.69 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 1.13 7.10 -51.93 -0.37 0.76 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.54 7.38 -51.93 -0.38 0.16 16 44 H 0.15 1.05 7.47 -52.49 -0.39 0.66 16 45 H 0.17 0.56 8.06 -52.49 -0.42 0.14 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.09 1.38 7.10 -51.93 -0.37 1.01 16 LS Contribution 371.19 15.07 5.59 5.59 Total: -1.00 -34.22 371.19 -10.67 -44.89 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -8.54 Total: 4.57 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: -1.38 Total: -31.12 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.80 Total: -46.12 kcal Atomic # 8 Polarization: -41.12 SS G_CDS: -1.65 Total: -42.77 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 49.54 SS G_CDS: -0.48 Total: 49.07 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.22 -10.67 -44.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590743768.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.643 kcal (2) G-P(sol) polarization free energy of solvation -34.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds