Wall clock time and date at job start Sat Apr 11 2020 06:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47094 * 2 1 4 4 C 1.50698 * 109.47255 * 239.99788 * 2 1 3 5 5 H 1.08001 * 119.99808 * 240.00019 * 4 2 1 6 6 C 1.37879 * 119.99969 * 59.99785 * 4 2 1 7 7 N 1.31513 * 119.99870 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99776 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47066 * 90.00485 * 8 6 4 10 10 H 1.48506 * 109.46942 * 209.99891 * 8 6 4 11 11 H 1.48491 * 109.47510 * 330.00262 * 8 6 4 12 12 C 1.53004 * 109.47068 * 119.99780 * 2 1 3 13 13 S 1.81398 * 109.47171 * 299.99936 * 12 2 1 14 14 O 1.42098 * 110.54240 * 68.37551 * 13 12 2 15 15 O 1.42101 * 110.54361 * 291.62553 * 13 12 2 16 16 N 1.65596 * 104.44933 * 180.02562 * 13 12 2 17 17 C 1.46931 * 120.62944 * 270.01983 * 16 13 12 18 18 C 1.53191 * 108.76527 * 126.35988 * 17 16 13 19 19 C 1.53046 * 109.30997 * 54.65907 * 18 17 16 20 20 C 1.53039 * 109.52798 * 298.61471 * 19 18 17 21 21 H 1.09000 * 109.49863 * 301.42271 * 20 19 18 22 22 C 1.50697 * 109.50029 * 181.32171 * 20 19 18 23 23 C 1.39871 * 125.89821 * 324.71998 * 22 20 19 24 24 C 1.35314 * 107.91658 * 179.86292 * 23 22 20 25 25 N 1.34945 * 107.75075 * 0.38914 * 24 23 22 26 26 H 0.96993 * 126.03820 * 179.75209 * 25 24 23 27 27 N 1.30837 * 125.89671 * 145.02200 * 22 20 19 28 28 C 1.46919 * 120.63444 * 90.00150 * 16 13 12 29 29 H 1.08998 * 109.47236 * 300.00211 * 1 2 3 30 30 H 1.08996 * 109.47090 * 60.00535 * 1 2 3 31 31 H 1.09005 * 109.46785 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47426 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46931 * 300.00086 * 3 2 1 34 34 H 1.08998 * 109.47704 * 60.00082 * 3 2 1 35 35 H 0.96998 * 120.00154 * 180.02562 * 7 6 4 36 36 H 1.09001 * 109.46997 * 180.02562 * 12 2 1 37 37 H 1.08991 * 109.47253 * 60.00216 * 12 2 1 38 38 H 1.08998 * 109.58959 * 246.15725 * 17 16 13 39 39 H 1.09003 * 109.58181 * 6.44208 * 17 16 13 40 40 H 1.08998 * 109.50939 * 294.70294 * 18 17 16 41 41 H 1.09003 * 109.48831 * 174.59930 * 18 17 16 42 42 H 1.09002 * 109.46115 * 178.59924 * 19 18 17 43 43 H 1.09004 * 109.45806 * 58.62809 * 19 18 17 44 44 H 1.07999 * 126.03870 * 359.97245 * 23 22 20 45 45 H 1.08002 * 126.12355 * 180.14584 * 24 23 22 46 46 H 1.08997 * 109.59005 * 113.84271 * 28 16 13 47 47 H 1.09002 * 109.70256 * 353.48508 * 28 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.3449 -2.1617 -4.4123 10 1 2.4873 -0.1404 -5.1120 11 1 3.6309 -1.7567 -3.7119 12 6 2.0400 -0.7212 1.2493 13 16 1.4354 0.1340 2.7304 14 8 0.0280 -0.0182 2.8544 15 8 2.0480 1.4101 2.8544 16 7 2.0541 -0.7399 3.9936 17 6 1.3020 -1.8655 4.5647 18 6 2.1987 -3.1075 4.5655 19 6 3.5044 -2.7886 5.2973 20 6 4.2393 -1.6632 4.5655 21 1 4.4401 -1.9675 3.5383 22 6 5.5403 -1.3718 5.2680 23 6 5.7578 -1.4296 6.6485 24 6 7.0505 -1.1040 6.8802 25 7 7.6283 -0.8408 5.6894 26 1 8.5510 -0.5771 5.5488 27 7 6.6600 -1.0158 4.6924 28 6 3.3658 -0.4047 4.5644 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 0.7089 1.1612 -3.4844 36 1 3.1300 -0.7208 1.2495 37 1 1.6767 -1.7488 1.2493 38 1 1.0070 -1.6269 5.5866 39 1 0.4133 -2.0541 3.9624 40 1 2.4189 -3.3981 3.5383 41 1 1.6871 -3.9250 5.0736 42 1 4.1340 -3.6781 5.3210 43 1 3.2818 -2.4741 6.3169 44 1 5.0240 -1.6900 7.3970 45 1 7.5325 -1.0587 7.8457 46 1 3.2391 -0.0470 5.5862 47 1 3.8414 0.3697 3.9625 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590743768.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:49 Heat of formation + Delta-G solvation = -26.496770 kcal Electronic energy + Delta-G solvation = -29227.691134 eV Core-core repulsion = 25345.073755 eV Total energy + Delta-G solvation = -3882.617379 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.10512 -39.42505 -38.18882 -38.13511 -36.90456 -34.38496 -33.63760 -32.79436 -30.91800 -30.57001 -28.37313 -27.70924 -27.26090 -25.46729 -24.87112 -22.42847 -21.88577 -21.21766 -20.05645 -19.71674 -18.94267 -18.76305 -17.90220 -17.20247 -16.93964 -16.67742 -15.96196 -15.64822 -15.50169 -15.30585 -14.85641 -14.81397 -14.62887 -14.57908 -14.43235 -14.29122 -13.92859 -13.74133 -13.38786 -13.35174 -12.96003 -12.87431 -12.83472 -12.75558 -12.51195 -12.30018 -12.19158 -12.16136 -12.01716 -11.84036 -11.74033 -11.64270 -11.58429 -11.37100 -11.23017 -10.66874 -10.42627 -10.39917 -9.83338 -9.56870 -8.03845 -6.22482 -0.64252 1.04803 1.42774 1.44285 1.53365 1.72854 1.92761 2.11953 2.43414 2.89299 3.17370 3.22873 3.53445 3.79068 3.84876 4.03874 4.12455 4.12812 4.18011 4.28824 4.38798 4.46259 4.58364 4.63178 4.66014 4.83744 4.84752 4.86933 4.89808 4.92670 4.97305 5.02354 5.04356 5.09945 5.24669 5.27762 5.32625 5.37625 5.48894 5.53771 5.63319 5.65735 5.78743 5.95623 6.10198 6.33381 6.55646 6.80764 6.81774 7.45571 8.96151 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013544 B = 0.003546 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.845482 B = 7893.484883 C = 8764.058365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.070 3.930 3 C -0.159 4.159 4 C -0.517 4.517 5 H 0.061 0.939 6 C 0.018 3.982 7 N -0.908 5.908 8 Si 0.954 3.046 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.269 1.269 12 C -0.586 4.586 13 S 2.609 3.391 14 O -0.983 6.983 15 O -0.991 6.991 16 N -0.998 5.998 17 C 0.108 3.892 18 C -0.134 4.134 19 C -0.096 4.096 20 C -0.024 4.024 21 H 0.073 0.927 22 C 0.073 3.927 23 C -0.281 4.281 24 C 0.070 3.930 25 N -0.477 5.477 26 H 0.449 0.551 27 N -0.343 5.343 28 C 0.134 3.866 29 H 0.032 0.968 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.031 0.969 35 H 0.262 0.738 36 H 0.126 0.874 37 H 0.136 0.864 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.107 0.893 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.169 0.831 45 H 0.220 0.780 46 H 0.090 0.910 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.756 -8.995 22.642 26.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.068 3.932 3 C -0.216 4.216 4 C -0.556 4.556 5 H 0.079 0.921 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.780 3.220 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.194 1.194 12 C -0.718 4.718 13 S 2.708 3.292 14 O -0.973 6.973 15 O -0.982 6.982 16 N -0.836 5.836 17 C -0.016 4.016 18 C -0.173 4.173 19 C -0.134 4.134 20 C -0.046 4.046 21 H 0.092 0.908 22 C -0.094 4.094 23 C -0.310 4.310 24 C -0.077 4.077 25 N -0.186 5.186 26 H 0.295 0.705 27 N -0.167 5.167 28 C 0.007 3.993 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.125 0.875 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.186 0.814 45 H 0.236 0.764 46 H 0.109 0.891 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.694 -7.833 21.539 24.884 hybrid contribution 0.776 -0.468 -0.995 1.346 sum 10.470 -8.301 20.543 24.506 Atomic orbital electron populations 1.22187 0.97480 1.00585 1.01325 1.17917 0.92501 0.91953 0.90863 1.22195 0.99546 0.98600 1.01295 1.21280 1.31647 1.12249 0.90473 0.92125 1.25678 0.95180 0.95648 1.01645 1.69940 1.37225 1.23620 1.23870 0.85613 0.78841 0.78323 0.79196 1.20087 1.21138 1.19407 1.30519 1.11885 1.13450 1.15984 1.04927 0.73972 0.74746 0.75582 1.93491 1.30802 1.86908 1.86119 1.93488 1.78522 1.40016 1.86143 1.57670 1.29328 1.47695 1.48896 1.21766 0.94144 0.84992 1.00747 1.21992 0.96055 0.97282 1.01938 1.21460 0.95469 0.96732 0.99721 1.19929 0.88446 0.96634 0.99600 0.90818 1.22300 0.93823 0.98823 0.94417 1.21741 0.98132 1.15998 0.95109 1.23310 0.94298 0.97952 0.92177 1.46434 1.12757 1.55132 1.04299 0.70513 1.77311 0.99313 1.25100 1.15012 1.21378 0.81196 0.96182 1.00498 0.94944 0.90991 0.93924 0.94571 0.90920 0.95019 0.92879 0.85588 0.84600 0.88960 0.89653 0.91898 0.87467 0.90453 0.89233 0.81391 0.76384 0.89145 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.04 7.78 71.98 0.56 -7.48 16 2 C 0.07 3.49 0.52 -52.93 -0.03 3.47 16 3 C -0.16 -8.25 7.77 71.98 0.56 -7.69 16 4 C -0.52 -27.82 8.01 25.60 0.21 -27.62 16 5 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 6 C 0.02 0.97 5.15 84.66 0.44 1.40 16 7 N -0.91 -51.34 9.35 21.45 0.20 -51.13 16 8 Si 0.95 43.12 29.54 68.60 2.03 45.14 16 9 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 10 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 C -0.59 -23.59 5.12 71.98 0.37 -23.22 16 13 S 2.61 100.06 4.45 -56.49 -0.25 99.81 16 14 O -0.98 -41.42 14.35 -127.65 -1.83 -43.26 16 15 O -0.99 -43.71 14.34 -127.65 -1.83 -45.54 16 16 N -1.00 -27.81 3.22 -513.07 -1.65 -29.46 16 17 C 0.11 2.26 6.32 86.36 0.55 2.81 16 18 C -0.13 -2.10 6.08 30.67 0.19 -1.92 16 19 C -0.10 -1.44 4.74 30.62 0.15 -1.29 16 20 C -0.02 -0.52 2.80 -11.46 -0.03 -0.55 16 21 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 22 C 0.07 1.61 6.13 43.10 0.26 1.87 16 23 C -0.28 -4.28 9.99 21.99 0.22 -4.06 16 24 C 0.07 0.80 11.99 83.54 1.00 1.80 16 25 N -0.48 -7.67 7.36 -57.59 -0.42 -8.10 16 26 H 0.45 4.45 8.96 -213.34 -1.91 2.53 16 27 N -0.34 -8.70 12.70 -47.39 -0.60 -9.30 16 28 C 0.13 3.41 5.58 86.36 0.48 3.90 16 29 H 0.03 1.57 5.46 -2.39 -0.01 1.56 16 30 H 0.07 3.98 6.07 -2.39 -0.01 3.96 16 31 H 0.04 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 4.08 6.07 -2.39 -0.01 4.07 16 34 H 0.03 1.58 5.46 -2.39 -0.01 1.56 16 35 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 36 H 0.13 4.77 8.14 -2.39 -0.02 4.75 16 37 H 0.14 4.84 8.14 -2.40 -0.02 4.82 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.09 1.94 7.10 -2.39 -0.02 1.93 16 40 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.09 1.01 7.38 -2.39 -0.02 1.00 16 44 H 0.17 1.72 7.47 -2.91 -0.02 1.69 16 45 H 0.22 0.34 8.06 -2.91 -0.02 0.31 16 46 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.07 2.10 7.10 -2.39 -0.02 2.08 16 Total: -1.00 -75.60 371.19 -0.38 -75.98 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: -0.93 Total: 24.44 kcal Atomic # 6 Polarization: -63.50 SS G_CDS: 4.91 Total: -58.58 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -2.48 Total: -98.00 kcal Atomic # 8 Polarization: -85.14 SS G_CDS: -3.66 Total: -88.80 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 100.06 SS G_CDS: -0.25 Total: 99.81 kcal Total: -75.60 -0.38 -75.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590743768.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.488 kcal (2) G-P(sol) polarization free energy of solvation -75.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds