Wall clock time and date at job start Sat Apr 11 2020 06:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30711 * 126.36888 * 2 1 4 4 N 1.28425 * 110.65836 * 180.28034 * 3 2 1 5 5 N 1.28950 * 110.21234 * 359.71858 * 4 3 2 6 6 N 1.35131 * 126.36583 * 179.80439 * 2 1 3 7 7 C 1.39971 * 127.39574 * 0.02562 * 6 2 1 8 8 C 1.39015 * 119.92450 * 144.70882 * 7 6 2 9 9 C 1.37741 * 120.08253 * 180.02562 * 8 7 6 10 10 C 1.39685 * 119.92250 * 359.97438 * 9 8 7 11 11 C 1.47694 * 120.08335 * 180.02562 * 10 9 8 12 12 O 1.21571 * 120.00136 * 51.04644 * 11 10 9 13 13 N 1.34776 * 120.00206 * 230.77349 * 11 10 9 14 14 C 1.46925 * 120.63026 * 175.90159 * 13 11 10 15 15 C 1.52766 * 109.00591 * 233.57994 * 14 13 11 16 16 C 1.53034 * 109.38694 * 305.58999 * 15 14 13 17 17 C 1.50694 * 109.44950 * 181.25508 * 16 15 14 18 18 H 1.08000 * 119.99785 * 239.93757 * 17 16 15 19 19 C 1.37880 * 120.00506 * 59.93717 * 17 16 15 20 20 N 1.31516 * 119.99237 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00438 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47299 * 89.99687 * 21 19 17 23 23 H 1.48494 * 109.47073 * 210.00171 * 21 19 17 24 24 H 1.48506 * 109.46785 * 329.99664 * 21 19 17 25 25 C 1.53036 * 109.53795 * 61.23476 * 16 15 14 26 26 C 1.46926 * 120.63093 * 356.17892 * 13 11 10 27 27 C 1.39688 * 119.83803 * 0.27594 * 10 9 8 28 28 C 1.37755 * 119.91650 * 359.42669 * 27 10 9 29 29 H 1.09001 * 109.47769 * 270.19257 * 1 2 3 30 30 H 1.09005 * 109.46914 * 30.19124 * 1 2 3 31 31 H 1.09002 * 109.46977 * 150.19100 * 1 2 3 32 32 H 1.08006 * 119.95657 * 0.02562 * 8 7 6 33 33 H 1.08007 * 120.04151 * 180.02562 * 9 8 7 34 34 H 1.09003 * 109.58874 * 353.41498 * 14 13 11 35 35 H 1.08999 * 109.58978 * 113.84361 * 14 13 11 36 36 H 1.09000 * 109.56107 * 185.54926 * 15 14 13 37 37 H 1.09002 * 109.38398 * 65.51866 * 15 14 13 38 38 H 1.09007 * 109.45665 * 301.21803 * 16 15 14 39 39 H 0.97008 * 119.99670 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.49775 * 178.67889 * 25 16 15 41 41 H 1.09003 * 109.52227 * 58.60987 * 25 16 15 42 42 H 1.09007 * 109.58513 * 246.15723 * 26 13 11 43 43 H 1.08999 * 109.58348 * 6.43731 * 26 13 11 44 44 H 1.08004 * 120.04032 * 179.70113 * 27 10 9 45 45 H 1.07994 * 119.95536 * 180.31676 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0525 0.0000 4 7 3.5183 0.7048 -0.0059 5 7 3.6196 -0.5807 -0.0041 6 7 2.3082 -1.0881 0.0037 7 6 1.9168 -2.4320 0.0078 8 6 2.6673 -3.3750 -0.6850 9 6 2.2848 -4.6982 -0.6836 10 6 1.1416 -5.0924 0.0155 11 6 0.7285 -6.5104 0.0199 12 8 1.5312 -7.3764 0.3088 13 7 -0.5398 -6.8438 -0.2911 14 6 -0.9431 -8.2539 -0.3785 15 6 -1.5989 -8.5005 -1.7361 16 6 -2.7443 -7.5053 -1.9352 17 6 -3.4119 -7.7672 -3.2605 18 1 -3.4393 -6.9936 -4.0136 19 6 -3.9878 -8.9946 -3.5117 20 7 -3.9549 -9.9364 -2.5944 21 14 -4.8148 -9.3195 -5.1548 22 1 -3.8194 -9.8691 -6.1099 23 1 -5.9161 -10.2983 -4.9697 24 1 -5.3665 -8.0493 -5.6911 25 6 -2.1916 -6.0783 -1.9158 26 6 -1.5439 -5.8042 -0.5550 27 6 0.3869 -4.1412 0.7063 28 6 0.7789 -2.8206 0.7055 29 1 -0.3635 0.0035 1.0276 30 1 -0.3633 0.8883 -0.5168 31 1 -0.3633 -0.8917 -0.5109 32 1 3.5514 -3.0697 -1.2251 33 1 2.8687 -5.4304 -1.2218 34 1 -0.0652 -8.8920 -0.2770 35 1 -1.6555 -8.4801 0.4148 36 1 -1.9898 -9.5173 -1.7732 37 1 -0.8589 -8.3662 -2.5250 38 1 -3.4719 -7.6237 -1.1323 39 1 -4.3597 -10.8000 -2.7713 40 1 -3.0043 -5.3711 -2.0811 41 1 -1.4459 -5.9658 -2.7029 42 1 -2.3064 -5.8265 0.2237 43 1 -1.0627 -4.8262 -0.5672 44 1 -0.5003 -4.4416 1.2439 45 1 0.1988 -2.0856 1.2435 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593593607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:58 Heat of formation + Delta-G solvation = 113.370939 kcal Electronic energy + Delta-G solvation = -29075.467496 eV Core-core repulsion = 25095.764036 eV Total energy + Delta-G solvation = -3979.703461 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.58314 -40.68221 -39.05736 -37.00652 -35.58781 -33.85353 -33.62885 -31.80078 -31.33952 -30.97659 -29.97598 -29.17035 -26.56935 -25.33914 -23.95687 -23.41390 -22.44428 -22.34892 -21.77791 -20.38649 -18.95607 -18.72485 -17.42956 -17.17497 -16.56030 -16.08518 -15.58564 -15.51903 -15.00387 -14.73339 -14.64158 -14.46938 -14.17982 -14.02641 -13.73885 -13.47298 -13.37527 -13.16688 -12.93924 -12.82501 -12.69984 -12.52013 -12.42138 -12.06052 -11.70771 -11.46880 -11.35729 -11.27756 -11.01392 -10.75703 -10.56527 -10.54939 -10.21460 -9.86351 -9.70057 -9.64136 -9.32936 -9.11384 -9.00113 -8.47820 -8.20203 -6.11450 -4.18354 -0.11284 0.75060 0.92144 1.35069 1.86616 2.59395 3.02172 3.22440 3.30241 3.31619 3.33067 3.44667 3.86237 4.20745 4.24620 4.33046 4.36031 4.49911 4.69112 4.74545 4.87810 4.91148 5.01958 5.02964 5.18488 5.21025 5.27189 5.38878 5.47377 5.56997 5.66243 5.74231 5.83829 5.91076 5.93350 6.10297 6.24737 6.28596 6.30828 6.46789 6.64443 6.81160 7.04174 7.19189 7.58553 7.64859 7.80563 7.94771 8.03613 8.24115 8.29895 8.84923 9.47468 10.94038 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017263 B = 0.002489 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.616297 B =11247.842680 C =12164.163700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.254 3.746 3 N -0.332 5.332 4 N -0.036 5.036 5 N -0.077 5.077 6 N -0.329 5.329 7 C 0.133 3.867 8 C -0.097 4.097 9 C -0.053 4.053 10 C -0.096 4.096 11 C 0.549 3.451 12 O -0.541 6.541 13 N -0.588 5.588 14 C 0.109 3.891 15 C -0.125 4.125 16 C 0.049 3.951 17 C -0.515 4.515 18 H 0.055 0.945 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.124 4.124 26 C 0.095 3.905 27 C -0.070 4.070 28 C -0.119 4.119 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.038 0.962 38 H 0.028 0.972 39 H 0.261 0.739 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.148 0.852 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.016 15.027 7.145 17.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.022 4.022 3 N -0.183 5.183 4 N -0.030 5.030 5 N -0.062 5.062 6 N -0.120 5.120 7 C 0.041 3.959 8 C -0.117 4.117 9 C -0.072 4.072 10 C -0.100 4.100 11 C 0.336 3.664 12 O -0.420 6.420 13 N -0.319 5.319 14 C -0.012 4.012 15 C -0.163 4.163 16 C 0.030 3.970 17 C -0.553 4.553 18 H 0.073 0.927 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.162 4.162 26 C -0.028 4.028 27 C -0.089 4.089 28 C -0.140 4.140 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.161 0.839 33 H 0.164 0.836 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.124 0.876 37 H 0.057 0.943 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.166 0.834 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.633 15.092 7.321 18.429 hybrid contribution -1.108 -0.829 -0.955 1.682 sum 6.524 14.263 6.366 16.927 Atomic orbital electron populations 1.20732 0.81878 1.06492 1.05503 1.25948 0.98363 0.82205 0.95637 1.74476 0.96305 1.24723 1.22770 1.78050 1.11421 1.04008 1.09533 1.82727 0.96889 1.04899 1.21638 1.48875 1.05917 1.06567 1.50671 1.17601 0.97563 0.79148 1.01618 1.20953 1.00108 0.92044 0.98569 1.21128 0.94433 0.95107 0.96518 1.20283 0.96144 0.94405 0.99125 1.18163 0.82475 0.87579 0.78174 1.90795 1.51872 1.50093 1.49256 1.48230 1.08526 1.09028 1.66162 1.21892 0.99534 0.79129 1.00627 1.21971 0.97387 1.05196 0.91756 1.18636 0.92820 0.88061 0.97442 1.21158 1.35435 0.98451 1.00248 0.92709 1.24963 0.95971 0.96267 0.96729 1.69833 1.44954 1.04625 1.33444 0.86615 0.79229 0.78100 0.84190 1.20712 1.21207 1.19952 1.22016 0.99235 1.01238 0.93736 1.22203 0.90832 0.90111 0.99628 1.21258 0.98979 0.91008 0.97665 1.20956 0.96190 0.97261 0.99585 0.87800 0.87264 0.88464 0.83923 0.83595 0.90412 0.91874 0.87582 0.94281 0.95387 0.92864 0.91906 0.92819 0.91370 0.90552 0.83402 0.84036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.35 8.74 36.01 0.31 -0.04 16 2 C 0.25 2.30 7.97 -155.16 -1.24 1.06 16 3 N -0.33 -3.94 12.15 32.76 0.40 -3.54 16 4 N -0.04 -0.48 13.39 60.35 0.81 0.33 16 5 N -0.08 -0.98 13.74 60.35 0.83 -0.15 16 6 N -0.33 -3.39 3.77 -7.94 -0.03 -3.42 16 7 C 0.13 1.22 6.35 -83.56 -0.53 0.69 16 8 C -0.10 -0.92 9.79 -39.48 -0.39 -1.31 16 9 C -0.05 -0.55 9.73 -39.22 -0.38 -0.94 16 10 C -0.10 -1.11 5.01 -104.95 -0.53 -1.64 16 11 C 0.55 8.46 7.23 -12.40 -0.09 8.37 16 12 O -0.54 -10.19 16.48 5.30 0.09 -10.10 16 13 N -0.59 -9.22 2.98 -174.20 -0.52 -9.74 16 14 C 0.11 1.97 6.39 -3.93 -0.03 1.94 16 15 C -0.12 -2.66 5.14 -26.83 -0.14 -2.80 16 16 C 0.05 1.07 2.07 -91.74 -0.19 0.88 16 17 C -0.51 -12.92 8.56 -34.44 -0.29 -13.21 16 18 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 19 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 20 N -0.89 -23.67 11.31 55.43 0.63 -23.04 16 21 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 25 C -0.12 -2.12 5.30 -26.62 -0.14 -2.27 16 26 C 0.09 1.27 5.37 -3.71 -0.02 1.25 16 27 C -0.07 -0.60 7.35 -39.22 -0.29 -0.89 16 28 C -0.12 -0.87 8.39 -39.47 -0.33 -1.20 16 29 H 0.10 0.21 7.84 -51.93 -0.41 -0.20 16 30 H 0.11 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 0.31 7.04 -51.93 -0.37 -0.06 16 32 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 33 H 0.15 1.49 8.06 -52.48 -0.42 1.06 16 34 H 0.08 1.44 7.03 -51.93 -0.37 1.08 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.11 2.57 6.03 -51.93 -0.31 2.25 16 37 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 39 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.08 0.80 4.53 -51.93 -0.24 0.56 16 44 H 0.15 1.04 7.04 -52.48 -0.37 0.67 16 45 H 0.14 0.63 6.28 -52.49 -0.33 0.30 16 LS Contribution 368.30 15.07 5.55 5.55 Total: -1.00 -31.34 368.30 -7.36 -38.70 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.73 Total: -1.13 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -4.36 Total: -8.58 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 2.11 Total: -39.55 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.34 -7.36 -38.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593593607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.075 kcal (2) G-P(sol) polarization free energy of solvation -31.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds