Wall clock time and date at job start Sat Apr 11 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30711 * 126.36888 * 2 1 4 4 N 1.28425 * 110.65836 * 180.28034 * 3 2 1 5 5 N 1.28950 * 110.21234 * 359.71858 * 4 3 2 6 6 N 1.35131 * 126.36583 * 179.80439 * 2 1 3 7 7 C 1.39971 * 127.39574 * 0.02562 * 6 2 1 8 8 C 1.39015 * 119.92450 * 144.70882 * 7 6 2 9 9 C 1.37741 * 120.08253 * 180.02562 * 8 7 6 10 10 C 1.39685 * 119.92250 * 359.97438 * 9 8 7 11 11 C 1.47694 * 120.08335 * 180.02562 * 10 9 8 12 12 O 1.21571 * 120.00136 * 51.04644 * 11 10 9 13 13 N 1.34776 * 120.00206 * 230.77349 * 11 10 9 14 14 C 1.46925 * 120.63026 * 175.90159 * 13 11 10 15 15 C 1.52766 * 109.00591 * 233.57994 * 14 13 11 16 16 C 1.53034 * 109.38694 * 305.58999 * 15 14 13 17 17 C 1.50694 * 109.44950 * 181.25508 * 16 15 14 18 18 H 1.08000 * 119.99785 * 239.93757 * 17 16 15 19 19 C 1.37880 * 120.00506 * 59.93717 * 17 16 15 20 20 N 1.31516 * 119.99237 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00438 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47299 * 89.99687 * 21 19 17 23 23 H 1.48494 * 109.47073 * 210.00171 * 21 19 17 24 24 H 1.48506 * 109.46785 * 329.99664 * 21 19 17 25 25 C 1.53036 * 109.53795 * 61.23476 * 16 15 14 26 26 C 1.46926 * 120.63093 * 356.17892 * 13 11 10 27 27 C 1.39688 * 119.83803 * 0.27594 * 10 9 8 28 28 C 1.37755 * 119.91650 * 359.42669 * 27 10 9 29 29 H 1.09001 * 109.47769 * 270.19257 * 1 2 3 30 30 H 1.09005 * 109.46914 * 30.19124 * 1 2 3 31 31 H 1.09002 * 109.46977 * 150.19100 * 1 2 3 32 32 H 1.08006 * 119.95657 * 0.02562 * 8 7 6 33 33 H 1.08007 * 120.04151 * 180.02562 * 9 8 7 34 34 H 1.09003 * 109.58874 * 353.41498 * 14 13 11 35 35 H 1.08999 * 109.58978 * 113.84361 * 14 13 11 36 36 H 1.09000 * 109.56107 * 185.54926 * 15 14 13 37 37 H 1.09002 * 109.38398 * 65.51866 * 15 14 13 38 38 H 1.09007 * 109.45665 * 301.21803 * 16 15 14 39 39 H 0.97008 * 119.99670 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.49775 * 178.67889 * 25 16 15 41 41 H 1.09003 * 109.52227 * 58.60987 * 25 16 15 42 42 H 1.09007 * 109.58513 * 246.15723 * 26 13 11 43 43 H 1.08999 * 109.58348 * 6.43731 * 26 13 11 44 44 H 1.08004 * 120.04032 * 179.70113 * 27 10 9 45 45 H 1.07994 * 119.95536 * 180.31676 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0525 0.0000 4 7 3.5183 0.7048 -0.0059 5 7 3.6196 -0.5807 -0.0041 6 7 2.3082 -1.0881 0.0037 7 6 1.9168 -2.4320 0.0078 8 6 2.6673 -3.3750 -0.6850 9 6 2.2848 -4.6982 -0.6836 10 6 1.1416 -5.0924 0.0155 11 6 0.7285 -6.5104 0.0199 12 8 1.5312 -7.3764 0.3088 13 7 -0.5398 -6.8438 -0.2911 14 6 -0.9431 -8.2539 -0.3785 15 6 -1.5989 -8.5005 -1.7361 16 6 -2.7443 -7.5053 -1.9352 17 6 -3.4119 -7.7672 -3.2605 18 1 -3.4393 -6.9936 -4.0136 19 6 -3.9878 -8.9946 -3.5117 20 7 -3.9549 -9.9364 -2.5944 21 14 -4.8148 -9.3195 -5.1548 22 1 -3.8194 -9.8691 -6.1099 23 1 -5.9161 -10.2983 -4.9697 24 1 -5.3665 -8.0493 -5.6911 25 6 -2.1916 -6.0783 -1.9158 26 6 -1.5439 -5.8042 -0.5550 27 6 0.3869 -4.1412 0.7063 28 6 0.7789 -2.8206 0.7055 29 1 -0.3635 0.0035 1.0276 30 1 -0.3633 0.8883 -0.5168 31 1 -0.3633 -0.8917 -0.5109 32 1 3.5514 -3.0697 -1.2251 33 1 2.8687 -5.4304 -1.2218 34 1 -0.0652 -8.8920 -0.2770 35 1 -1.6555 -8.4801 0.4148 36 1 -1.9898 -9.5173 -1.7732 37 1 -0.8589 -8.3662 -2.5250 38 1 -3.4719 -7.6237 -1.1323 39 1 -4.3597 -10.8000 -2.7713 40 1 -3.0043 -5.3711 -2.0811 41 1 -1.4459 -5.9658 -2.7029 42 1 -2.3064 -5.8265 0.2237 43 1 -1.0627 -4.8262 -0.5672 44 1 -0.5003 -4.4416 1.2439 45 1 0.1988 -2.0856 1.2435 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593593607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:57 Heat of formation + Delta-G solvation = 95.099424 kcal Electronic energy + Delta-G solvation = -29076.259809 eV Core-core repulsion = 25095.764036 eV Total energy + Delta-G solvation = -3980.495773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.36968 -41.70920 -40.05092 -38.42296 -36.41191 -35.37644 -34.43834 -33.07008 -32.48024 -32.08086 -31.08793 -29.74515 -28.12135 -26.36965 -24.92436 -24.64309 -23.71872 -23.30157 -22.58059 -21.66858 -20.20730 -19.57376 -18.67078 -18.24848 -17.95990 -17.29317 -16.64178 -16.48783 -16.15706 -15.86516 -15.72828 -15.35851 -15.06005 -14.84335 -14.73879 -14.52533 -14.46848 -14.16389 -14.03514 -13.96931 -13.87736 -13.44654 -13.32040 -13.16104 -13.04496 -12.81359 -12.66159 -12.42472 -12.22879 -12.14908 -12.10638 -11.89941 -11.40231 -11.30189 -11.22524 -10.89924 -10.79031 -10.39931 -10.23785 -9.92929 -9.57641 -8.06761 -6.19593 -0.87676 0.07120 0.13306 0.64049 1.07870 1.41486 1.44548 1.50899 1.52191 1.94860 2.40029 2.44930 2.89818 3.20734 3.20973 3.33243 3.57073 3.62932 3.80977 3.96544 4.11316 4.14168 4.23446 4.29685 4.33965 4.37387 4.50574 4.58593 4.63768 4.66744 4.71796 4.75130 4.78231 4.90835 4.94655 5.00067 5.01518 5.13338 5.18198 5.25677 5.27856 5.46681 5.53476 5.58932 5.68049 6.01243 6.13697 6.40550 6.43605 6.92624 7.02908 7.22423 7.48793 8.96447 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017263 B = 0.002489 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.616297 B =11247.842680 C =12164.163700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.267 3.733 3 N -0.358 5.358 4 N -0.058 5.058 5 N -0.103 5.103 6 N -0.332 5.332 7 C 0.129 3.871 8 C -0.099 4.099 9 C -0.058 4.058 10 C -0.113 4.113 11 C 0.551 3.449 12 O -0.584 6.584 13 N -0.591 5.591 14 C 0.121 3.879 15 C -0.114 4.114 16 C 0.044 3.956 17 C -0.529 4.529 18 H 0.053 0.947 19 C 0.014 3.986 20 N -0.915 5.915 21 Si 0.945 3.055 22 H -0.283 1.283 23 H -0.286 1.286 24 H -0.266 1.266 25 C -0.117 4.117 26 C 0.100 3.900 27 C -0.060 4.060 28 C -0.096 4.096 29 H 0.135 0.865 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.020 0.980 38 H 0.008 0.992 39 H 0.259 0.741 40 H 0.078 0.922 41 H 0.043 0.957 42 H 0.089 0.911 43 H 0.117 0.883 44 H 0.174 0.826 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.502 17.621 8.032 19.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.008 4.008 3 N -0.210 5.210 4 N -0.052 5.052 5 N -0.088 5.088 6 N -0.123 5.123 7 C 0.038 3.962 8 C -0.119 4.119 9 C -0.078 4.078 10 C -0.116 4.116 11 C 0.340 3.660 12 O -0.465 6.465 13 N -0.321 5.321 14 C -0.002 4.002 15 C -0.153 4.153 16 C 0.026 3.974 17 C -0.567 4.567 18 H 0.071 0.929 19 C -0.185 4.185 20 N -0.555 5.555 21 Si 0.772 3.228 22 H -0.209 1.209 23 H -0.212 1.212 24 H -0.191 1.191 25 C -0.156 4.156 26 C -0.021 4.021 27 C -0.079 4.079 28 C -0.117 4.117 29 H 0.153 0.847 30 H 0.139 0.861 31 H 0.133 0.867 32 H 0.161 0.839 33 H 0.156 0.844 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.039 0.961 38 H 0.026 0.974 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.062 0.938 42 H 0.108 0.892 43 H 0.134 0.866 44 H 0.191 0.809 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 6.108 17.716 8.199 20.454 hybrid contribution -0.650 -1.610 -1.254 2.142 sum 5.457 16.106 6.945 18.369 Atomic orbital electron populations 1.21150 0.78032 1.07955 1.07848 1.26877 0.99949 0.80932 0.93052 1.74420 0.96206 1.26243 1.24083 1.78029 1.12539 1.04427 1.10255 1.82668 0.98605 1.04839 1.22656 1.48922 1.05425 1.07159 1.50819 1.17834 0.98125 0.78593 1.01696 1.20925 1.00367 0.91712 0.98861 1.21052 0.94389 0.95451 0.96889 1.20034 0.97512 0.92531 1.01566 1.18707 0.81562 0.88988 0.76750 1.90770 1.52845 1.51905 1.50993 1.48231 1.09421 1.08245 1.66241 1.21518 0.98868 0.81152 0.98614 1.21723 0.96944 1.03407 0.93210 1.18624 0.92326 0.91293 0.95160 1.21598 1.35233 0.98303 1.01610 0.92916 1.25661 0.96886 0.96426 0.99492 1.69965 1.45800 1.04792 1.34907 0.85753 0.78189 0.78058 0.80824 1.20914 1.21210 1.19085 1.21879 0.99541 0.98182 0.95959 1.22361 0.90896 0.91042 0.97831 1.21485 0.99143 0.90670 0.96626 1.21277 0.95072 0.97330 0.97975 0.84671 0.86080 0.86716 0.83918 0.84358 0.91460 0.91278 0.90938 0.96092 0.97372 0.93146 0.90381 0.93801 0.89239 0.86559 0.80883 0.80090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.27 8.74 71.24 0.62 0.36 16 2 C 0.27 3.95 7.97 138.04 1.10 5.05 16 3 N -0.36 -7.89 12.15 -50.27 -0.61 -8.50 16 4 N -0.06 -1.51 13.39 37.02 0.50 -1.02 16 5 N -0.10 -2.52 13.74 37.02 0.51 -2.01 16 6 N -0.33 -5.97 3.77 -179.03 -0.67 -6.64 16 7 C 0.13 1.94 6.35 38.21 0.24 2.19 16 8 C -0.10 -1.71 9.79 22.34 0.22 -1.49 16 9 C -0.06 -1.16 9.73 22.50 0.22 -0.94 16 10 C -0.11 -2.34 5.01 -20.08 -0.10 -2.44 16 11 C 0.55 16.33 7.23 86.74 0.63 16.96 16 12 O -0.58 -22.15 16.48 -3.94 -0.06 -22.21 16 13 N -0.59 -17.64 2.98 -823.31 -2.45 -20.10 16 14 C 0.12 4.40 6.39 86.22 0.55 4.95 16 15 C -0.11 -5.01 5.14 30.53 0.16 -4.86 16 16 C 0.04 1.94 2.07 -11.52 -0.02 1.92 16 17 C -0.53 -26.71 8.56 25.60 0.22 -26.49 16 18 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 19 C 0.01 0.73 5.30 84.65 0.45 1.18 16 20 N -0.91 -49.87 11.31 21.45 0.24 -49.63 16 21 Si 0.95 41.52 29.54 68.60 2.03 43.54 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 23 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 25 C -0.12 -3.79 5.30 30.67 0.16 -3.62 16 26 C 0.10 2.34 5.37 86.36 0.46 2.80 16 27 C -0.06 -0.75 7.35 22.51 0.17 -0.58 16 28 C -0.10 -0.89 8.39 22.34 0.19 -0.70 16 29 H 0.14 -0.34 7.84 -2.39 -0.02 -0.36 16 30 H 0.12 0.17 8.14 -2.38 -0.02 0.15 16 31 H 0.11 0.01 7.04 -2.39 -0.02 -0.01 16 32 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 34 H 0.07 2.58 7.03 -2.39 -0.02 2.56 16 35 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.07 3.68 6.03 -2.39 -0.01 3.67 16 37 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 39 H 0.26 13.63 8.31 -92.70 -0.77 12.86 16 40 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.12 1.83 4.53 -2.39 -0.01 1.82 16 44 H 0.17 1.36 7.04 -2.91 -0.02 1.34 16 45 H 0.18 0.28 6.28 -2.91 -0.02 0.26 16 Total: -1.00 -72.73 368.30 5.76 -66.97 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.03 Total: 5.31 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 5.26 Total: -5.72 kcal Atomic # 7 Polarization: -85.40 SS G_CDS: -2.49 Total: -87.89 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.06 Total: -22.21 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Total: -72.73 5.76 -66.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593593607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.068 kcal (2) G-P(sol) polarization free energy of solvation -72.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds