Wall clock time and date at job start Sat Apr 11 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47240 * 2 1 4 4 C 1.52999 * 109.47543 * 120.00228 * 2 1 3 5 5 N 1.46503 * 109.47551 * 174.99831 * 4 2 1 6 6 C 1.35044 * 126.39660 * 90.02117 * 5 4 2 7 7 N 1.30498 * 108.69841 * 179.74090 * 6 5 4 8 8 C 1.34128 * 109.25660 * 0.02562 * 7 6 5 9 9 S 1.76197 * 125.98843 * 180.02562 * 8 7 6 10 10 O 1.42102 * 106.40388 * 83.51747 * 9 8 7 11 11 O 1.42105 * 106.40311 * 216.43690 * 9 8 7 12 12 N 1.65602 * 107.21930 * 329.97415 * 9 8 7 13 13 C 1.46932 * 120.62819 * 89.99820 * 12 9 8 14 14 C 1.53194 * 108.77448 * 233.58623 * 13 12 9 15 15 C 1.53044 * 109.31408 * 305.36686 * 14 13 12 16 16 C 1.53040 * 109.53774 * 61.36674 * 15 14 13 17 17 H 1.09000 * 109.50169 * 58.61510 * 16 15 14 18 18 C 1.50694 * 109.49776 * 178.68806 * 16 15 14 19 19 H 1.07999 * 120.00828 * 120.00293 * 18 16 15 20 20 C 1.37879 * 119.99746 * 299.99551 * 18 16 15 21 21 N 1.31516 * 120.00035 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 120.00109 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47031 * 90.00199 * 22 20 18 24 24 H 1.48500 * 109.46713 * 210.00174 * 22 20 18 25 25 H 1.48499 * 109.47124 * 329.99830 * 22 20 18 26 26 C 1.46922 * 120.63276 * 269.72196 * 12 9 8 27 27 C 1.34669 * 108.02336 * 0.02562 * 8 7 6 28 28 H 1.09003 * 109.46772 * 300.00067 * 1 2 3 29 29 H 1.08996 * 109.47536 * 59.99912 * 1 2 3 30 30 H 1.08994 * 109.47533 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47206 * 240.00159 * 2 1 3 32 32 H 1.09003 * 109.46894 * 299.99770 * 3 2 1 33 33 H 1.08991 * 109.46879 * 60.00317 * 3 2 1 34 34 H 1.08999 * 109.47032 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.46878 * 54.99787 * 4 2 1 36 36 H 1.09007 * 109.46943 * 294.99802 * 4 2 1 37 37 H 1.08003 * 125.64687 * 359.70587 * 6 5 4 38 38 H 1.08999 * 109.58743 * 353.37807 * 13 12 9 39 39 H 1.09000 * 109.58273 * 113.79831 * 13 12 9 40 40 H 1.08996 * 109.49607 * 65.31672 * 14 13 12 41 41 H 1.08998 * 109.49234 * 185.41791 * 14 13 12 42 42 H 1.08996 * 109.45927 * 181.38683 * 15 14 13 43 43 H 1.09002 * 109.45810 * 301.35910 * 15 14 13 44 44 H 0.96997 * 120.00469 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.58841 * 246.20012 * 26 12 9 46 46 H 1.09001 * 109.58550 * 6.62605 * 26 12 9 47 47 H 1.07996 * 126.59301 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.3881 0.0694 1.6728 7 7 5.5944 -0.3704 1.4402 8 6 5.5206 -1.5505 0.8069 9 16 6.8871 -2.5325 0.2846 10 8 7.2916 -3.2914 1.4159 11 8 6.5083 -3.1221 -0.9517 12 7 8.1341 -1.4968 -0.0540 13 6 9.0940 -1.1142 0.9906 14 6 9.1612 0.4146 1.0624 15 6 9.4864 0.9727 -0.3251 16 6 8.3780 0.5835 -1.3059 17 1 7.4242 0.9735 -0.9506 18 6 8.6828 1.1607 -2.6642 19 1 8.8071 0.5057 -3.5139 20 6 8.8029 2.5251 -2.8223 21 7 8.6520 3.3228 -1.7876 22 14 9.1801 3.2407 -4.5061 23 1 7.9091 3.5199 -5.2212 24 1 9.9463 4.5028 -4.3471 25 1 9.9850 2.2682 -5.2882 26 6 8.3052 -0.9478 -1.4060 27 6 4.2190 -1.8532 0.6403 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6054 -1.7198 1.2950 36 1 1.7517 -0.1583 2.1370 37 1 4.1407 0.9966 2.1685 38 1 8.7661 -1.5111 1.9513 39 1 10.0787 -1.5122 0.7453 40 1 8.2000 0.8057 1.3957 41 1 9.9392 0.7118 1.7655 42 1 9.5591 2.0589 -0.2716 43 1 10.4357 0.5616 -0.6685 44 1 8.7368 4.2826 -1.8986 45 1 9.2268 -1.3324 -1.8427 46 1 7.4566 -1.2348 -2.0270 47 1 3.8192 -2.7369 0.1654 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594801507.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:02 Heat of formation + Delta-G solvation = -28.004723 kcal Electronic energy + Delta-G solvation = -29176.544873 eV Core-core repulsion = 25293.862104 eV Total energy + Delta-G solvation = -3882.682769 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.19363 -37.50571 -36.97723 -36.78579 -35.45749 -33.19691 -32.82881 -30.91876 -29.93786 -29.80595 -27.54888 -26.85369 -24.99764 -23.46477 -22.33340 -21.58963 -21.48895 -20.60650 -19.31268 -18.31125 -17.85489 -16.89544 -16.07503 -15.95020 -15.73168 -15.45641 -15.29705 -14.57884 -14.37422 -14.03232 -13.91401 -13.70959 -13.35372 -13.25132 -13.01992 -12.75241 -12.62091 -12.51336 -12.43380 -12.04810 -11.79228 -11.68733 -11.59914 -11.41442 -11.28380 -11.18703 -11.14905 -10.93610 -10.69887 -10.64146 -10.12130 -10.02016 -9.81647 -9.80789 -9.62099 -9.22318 -8.85237 -8.71023 -8.34042 -7.99653 -5.93457 -4.00377 0.90928 1.70491 2.56191 2.82831 3.32742 3.33345 3.39631 3.44008 4.10307 4.21342 4.28891 4.47243 4.48718 4.65758 4.73236 4.79631 4.96459 4.99454 5.16385 5.26664 5.28637 5.35721 5.42489 5.48924 5.53233 5.70223 5.83752 5.93715 5.96162 6.02774 6.03203 6.24303 6.27438 6.45782 6.52398 6.65749 6.77579 6.87108 7.01019 7.09513 7.21125 7.43233 7.61726 7.80549 7.84240 8.09118 8.22099 8.50250 9.03751 9.63618 11.11289 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009193 B = 0.004586 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3044.937138 B = 6103.688341 C = 8004.386930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C -0.156 4.156 4 C 0.104 3.896 5 N -0.451 5.451 6 C 0.186 3.814 7 N -0.404 5.404 8 C -0.546 4.546 9 S 2.722 3.278 10 O -0.967 6.967 11 O -0.964 6.964 12 N -0.978 5.978 13 C 0.132 3.868 14 C -0.134 4.134 15 C -0.107 4.107 16 C 0.042 3.958 17 H 0.033 0.967 18 C -0.514 4.514 19 H 0.056 0.944 20 C 0.064 3.936 21 N -0.887 5.887 22 Si 0.889 3.111 23 H -0.283 1.283 24 H -0.288 1.288 25 H -0.274 1.274 26 C 0.127 3.873 27 C 0.055 3.945 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.210 0.790 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.050 0.950 42 H 0.091 0.909 43 H 0.032 0.968 44 H 0.258 0.742 45 H 0.062 0.938 46 H 0.073 0.927 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.678 -6.449 8.178 17.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.134 4.134 3 C -0.213 4.213 4 C -0.019 4.019 5 N -0.132 5.132 6 C -0.099 4.099 7 N -0.120 5.120 8 C -0.757 4.757 9 S 2.808 3.192 10 O -0.957 6.957 11 O -0.954 6.954 12 N -0.818 5.818 13 C 0.007 3.993 14 C -0.173 4.173 15 C -0.145 4.145 16 C 0.022 3.978 17 H 0.051 0.949 18 C -0.553 4.553 19 H 0.074 0.926 20 C -0.137 4.137 21 N -0.526 5.526 22 Si 0.717 3.283 23 H -0.209 1.209 24 H -0.214 1.214 25 H -0.199 1.199 26 C 0.004 3.996 27 C -0.085 4.085 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.226 0.774 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.110 0.890 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -14.091 -6.731 8.408 17.736 hybrid contribution -1.116 0.935 -0.994 1.762 sum -15.207 -5.796 7.414 17.884 Atomic orbital electron populations 1.21772 0.93643 1.02132 1.02651 1.21539 0.96595 0.97641 0.97630 1.21937 1.02281 0.94701 1.02377 1.22155 0.76306 1.03129 1.00275 1.45825 1.07815 1.16959 1.42597 1.25252 0.84029 0.97441 1.03175 1.70379 1.21933 1.06983 1.12742 1.33638 1.14136 1.09736 1.18197 1.01131 0.72231 0.72928 0.72893 1.93544 1.81295 1.67818 1.53058 1.93565 1.83677 1.74686 1.43434 1.57322 1.40448 1.65685 1.18360 1.21360 0.91830 0.97068 0.89087 1.21991 1.01584 0.93856 0.99882 1.21534 0.98004 1.03289 0.91660 1.19023 0.95969 0.87871 0.94911 0.94896 1.21162 1.48346 0.91751 0.94085 0.92561 1.24919 0.95288 0.97160 0.96363 1.69896 1.50122 1.03462 1.29092 0.86653 0.78278 0.78581 0.84800 1.20899 1.21356 1.19884 1.21899 1.01070 0.97844 0.78832 1.22465 0.90941 0.94765 1.00342 0.92261 0.91722 0.92358 0.90089 0.91871 0.92393 0.91689 0.88741 0.88400 0.77398 0.90679 0.91933 0.91230 0.93168 0.89027 0.94956 0.93176 0.91975 0.90902 0.79730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.19 37.15 0.34 -0.44 16 2 C -0.11 -0.86 3.13 -90.62 -0.28 -1.15 16 3 C -0.16 -1.39 8.89 37.16 0.33 -1.06 16 4 C 0.10 0.73 5.58 -4.04 -0.02 0.71 16 5 N -0.45 -5.16 2.57 -118.57 -0.31 -5.46 16 6 C 0.19 2.49 10.86 -90.38 -0.98 1.51 16 7 N -0.40 -7.01 11.25 -13.86 -0.16 -7.17 16 8 C -0.55 -9.35 7.08 -17.81 -0.13 -9.48 16 9 S 2.72 50.51 5.82 -107.50 -0.63 49.88 16 10 O -0.97 -19.12 16.73 -57.17 -0.96 -20.08 16 11 O -0.96 -19.12 16.66 -57.17 -0.95 -20.07 16 12 N -0.98 -19.09 3.28 -113.27 -0.37 -19.46 16 13 C 0.13 2.40 6.38 -3.71 -0.02 2.38 16 14 C -0.13 -2.63 6.08 -26.61 -0.16 -2.79 16 15 C -0.11 -2.49 4.96 -26.69 -0.13 -2.62 16 16 C 0.04 1.04 2.27 -91.43 -0.21 0.83 16 17 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 18 C -0.51 -13.94 8.56 -34.44 -0.29 -14.24 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 21 N -0.89 -24.97 11.31 55.43 0.63 -24.34 16 22 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 26 C 0.13 2.75 5.63 -3.49 -0.02 2.73 16 27 C 0.06 0.76 11.44 -16.56 -0.19 0.57 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.76 6.50 -51.93 -0.34 0.42 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.21 2.05 8.06 -52.48 -0.42 1.63 16 38 H 0.07 1.28 7.13 -51.93 -0.37 0.91 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.09 2.40 6.04 -51.93 -0.31 2.09 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.07 1.57 7.12 -51.93 -0.37 1.20 16 47 H 0.19 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 386.76 15.07 5.83 5.83 Total: -1.00 -33.87 386.76 -11.50 -45.36 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -7.70 Total: 0.78 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -1.86 Total: -21.40 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -0.21 Total: -56.43 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -1.91 Total: -40.15 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 50.51 SS G_CDS: -0.63 Total: 49.88 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.87 -11.50 -45.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594801507.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.356 kcal (2) G-P(sol) polarization free energy of solvation -33.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds