Wall clock time and date at job start Sat Apr 11 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40083 * 126.03590 * 2 1 4 4 C 1.30841 * 108.20372 * 180.02562 * 3 2 1 5 5 C 1.39873 * 108.20251 * 359.77900 * 4 3 2 6 6 C 1.50693 * 126.04164 * 180.23306 * 5 4 3 7 7 C 1.53002 * 117.49956 * 8.77448 * 6 5 4 8 8 C 1.52998 * 60.00064 * 252.51178 * 7 6 5 9 9 C 1.34940 * 126.03482 * 180.02562 * 2 1 3 10 10 C 1.50703 * 126.13045 * 359.94940 * 9 2 1 11 11 N 1.46498 * 109.47212 * 90.01833 * 10 9 2 12 12 S 1.65602 * 119.99612 * 164.72359 * 11 10 9 13 13 O 1.42109 * 104.27511 * 181.34803 * 12 11 10 14 14 O 1.42098 * 104.28120 * 309.20801 * 12 11 10 15 15 C 1.81394 * 104.44973 * 65.28269 * 12 11 10 16 16 C 1.53003 * 109.47387 * 179.97438 * 15 12 11 17 17 C 1.53000 * 109.46517 * 299.99470 * 16 15 12 18 18 C 1.52993 * 109.47159 * 59.99605 * 16 15 12 19 19 C 1.50707 * 109.47138 * 179.97438 * 16 15 12 20 20 H 1.08001 * 119.99608 * 359.97438 * 19 16 15 21 21 C 1.37871 * 119.99869 * 179.97438 * 19 16 15 22 22 N 1.31520 * 119.99869 * 359.97438 * 21 19 16 23 23 Si 1.86795 * 120.00166 * 180.02562 * 21 19 16 24 24 H 1.48501 * 109.47153 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47547 * 119.99725 * 23 21 19 26 26 H 1.48501 * 109.47187 * 240.00056 * 23 21 19 27 27 H 1.08996 * 109.47425 * 269.97684 * 1 2 3 28 28 H 1.09005 * 109.46929 * 29.98363 * 1 2 3 29 29 H 1.09000 * 109.47159 * 149.97556 * 1 2 3 30 30 H 1.08002 * 125.89696 * 179.97438 * 4 3 2 31 31 H 1.09003 * 115.55061 * 154.48268 * 6 5 4 32 32 H 1.09005 * 117.49618 * 0.02562 * 7 6 5 33 33 H 1.09002 * 117.50030 * 145.01733 * 7 6 5 34 34 H 1.09001 * 117.49771 * 252.51014 * 8 7 6 35 35 H 1.08997 * 117.50204 * 107.48794 * 8 7 6 36 36 H 1.08996 * 109.47013 * 330.02139 * 10 9 2 37 37 H 1.08999 * 109.47128 * 210.02352 * 10 9 2 38 38 H 0.97001 * 120.00384 * 345.00836 * 11 10 9 39 39 H 1.09009 * 109.47044 * 299.99503 * 15 12 11 40 40 H 1.09001 * 109.47747 * 59.99183 * 15 12 11 41 41 H 1.08994 * 109.47224 * 60.00651 * 17 16 15 42 42 H 1.09008 * 109.46641 * 179.97438 * 17 16 15 43 43 H 1.09001 * 109.47344 * 299.99451 * 17 16 15 44 44 H 1.09002 * 109.47371 * 59.99841 * 18 16 15 45 45 H 1.08994 * 109.47114 * 180.02562 * 18 16 15 46 46 H 1.08998 * 109.47012 * 299.99873 * 18 16 15 47 47 H 0.97007 * 119.99442 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7321 -0.0006 5 6 3.5437 -0.6666 0.0042 6 6 4.7679 -1.5453 0.0103 7 6 6.1234 -0.8670 0.2184 8 6 5.7423 -1.4074 -1.1613 9 6 2.2588 -1.0912 -0.0005 10 6 1.7973 -2.5258 -0.0001 11 7 1.6472 -2.9909 -1.3811 12 16 1.5227 -4.6112 -1.7001 13 8 1.4254 -4.6830 -3.1161 14 8 2.6226 -5.1896 -1.0111 15 6 -0.0429 -5.1054 -0.9288 16 6 -0.2745 -6.6004 -1.1574 17 6 -0.3348 -6.8831 -2.6599 18 6 0.8744 -7.3957 -0.5345 19 6 -1.5749 -7.0112 -0.5160 20 1 -2.1758 -6.2792 0.0032 21 6 -1.9975 -8.3213 -0.5920 22 7 -1.2660 -9.2125 -1.2247 23 14 -3.6097 -8.8303 0.2024 24 1 -4.2388 -7.6494 0.8464 25 1 -4.5228 -9.3741 -0.8348 26 1 -3.3489 -9.8724 1.2278 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5136 29 1 -0.3633 -0.8898 -0.5142 30 1 4.4054 1.3710 -0.0011 31 1 4.6312 -2.5390 0.4369 32 1 6.1297 0.2149 0.3514 33 1 6.8788 -1.4142 0.7823 34 1 6.2470 -2.3103 -1.5051 35 1 5.4978 -0.6811 -1.9364 36 1 0.8390 -2.5990 0.5141 37 1 2.5334 -3.1441 0.5137 38 1 1.6248 -2.3502 -2.1090 39 1 -0.0002 -4.9036 0.1416 40 1 -0.8615 -4.5391 -1.3728 41 1 0.6060 -6.5862 -3.1235 42 1 -0.4994 -7.9483 -2.8229 43 1 -1.1534 -6.3165 -3.1037 44 1 0.9174 -7.1943 0.5359 45 1 0.7096 -8.4607 -0.6978 46 1 1.8151 -7.0987 -0.9981 47 1 -1.5635 -10.1343 -1.2785 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594852177.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:05 Heat of formation + Delta-G solvation = 29.544714 kcal Electronic energy + Delta-G solvation = -28693.507744 eV Core-core repulsion = 24813.320506 eV Total energy + Delta-G solvation = -3880.187238 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.62906 -37.16982 -36.64630 -36.33512 -35.62735 -35.29714 -33.12339 -31.71851 -30.54261 -27.01699 -26.71205 -25.87066 -25.76303 -25.26370 -23.08847 -22.41480 -20.57617 -19.79834 -19.51181 -18.86568 -17.55279 -16.88734 -16.09579 -16.03035 -15.81006 -15.44193 -15.35426 -14.80201 -14.58476 -14.47347 -14.29279 -13.72518 -13.14326 -13.11278 -13.01771 -12.89609 -12.74562 -12.56341 -12.14953 -12.04061 -11.75313 -11.60269 -11.50299 -11.16524 -11.12437 -10.98344 -10.96002 -10.77109 -10.71415 -10.42411 -10.41807 -10.32856 -10.17647 -9.75612 -9.70518 -9.56211 -9.37967 -8.73124 -8.45112 -8.35708 -6.08289 -4.20575 0.71616 1.56845 2.26508 2.46620 3.19904 3.21374 3.30191 3.31947 3.90308 4.14439 4.25173 4.28137 4.34476 4.63914 4.73243 4.80329 4.90944 4.93416 4.99433 5.04630 5.14256 5.17426 5.19542 5.23128 5.49062 5.53910 5.56029 5.60992 5.79805 5.81007 5.95535 6.04206 6.16950 6.29956 6.41579 6.64375 6.74129 6.74456 6.85144 6.92593 7.01681 7.26524 7.45292 7.47212 7.63198 7.93581 8.04523 8.27659 8.78086 9.45267 10.93012 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017259 B = 0.003116 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.926536 B = 8985.099726 C = 9820.556471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.365 5.365 3 N -0.290 5.290 4 C 0.049 3.951 5 C -0.182 4.182 6 C -0.078 4.078 7 C -0.176 4.176 8 C -0.173 4.173 9 C 0.080 3.920 10 C 0.182 3.818 11 N -1.126 6.126 12 S 2.593 3.407 13 O -0.960 6.960 14 O -0.959 6.959 15 C -0.583 4.583 16 C 0.082 3.918 17 C -0.164 4.164 18 C -0.164 4.164 19 C -0.502 4.502 20 H 0.059 0.941 21 C 0.065 3.935 22 N -0.882 5.882 23 Si 0.896 3.104 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.181 0.819 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.413 0.587 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.027 0.973 42 H 0.095 0.905 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.095 0.905 46 H 0.028 0.972 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.702 17.184 3.141 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.148 5.148 3 N -0.111 5.111 4 C -0.136 4.136 5 C -0.195 4.195 6 C -0.098 4.098 7 C -0.213 4.213 8 C -0.210 4.210 9 C -0.049 4.049 10 C 0.054 3.946 11 N -0.883 5.883 12 S 2.691 3.309 13 O -0.951 6.951 14 O -0.949 6.949 15 C -0.716 4.716 16 C 0.080 3.920 17 C -0.222 4.222 18 C -0.222 4.222 19 C -0.542 4.542 20 H 0.077 0.923 21 C -0.137 4.137 22 N -0.520 5.520 23 Si 0.724 3.276 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.209 1.209 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.198 0.802 31 H 0.133 0.867 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.124 0.876 38 H 0.246 0.754 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.046 0.954 42 H 0.114 0.886 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.114 0.886 46 H 0.047 0.953 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.401 17.390 2.766 19.100 hybrid contribution -1.066 -0.403 0.519 1.253 sum 6.335 16.987 3.285 18.425 Atomic orbital electron populations 1.21962 0.73981 1.04949 1.03783 1.48396 1.06585 1.03147 1.56678 1.77367 1.01587 1.07901 1.24258 1.23674 0.95175 0.94301 1.00492 1.19095 0.92584 0.93136 1.14660 1.20270 0.87087 0.98833 1.03565 1.22958 0.97790 1.00475 1.00062 1.23008 1.03052 1.03326 0.91662 1.20602 0.90842 0.89887 1.03540 1.19721 1.01962 0.88860 0.84021 1.55958 1.91790 1.27748 1.12764 1.05714 0.78313 0.71717 0.75160 1.93568 1.88157 1.84361 1.28995 1.93544 1.50213 1.75240 1.75928 1.30549 1.18339 1.10839 1.11897 1.17939 0.96833 0.83105 0.94150 1.22280 0.98464 1.05660 0.95786 1.22275 0.95138 1.05678 0.99064 1.20965 1.04105 0.94345 1.34767 0.92264 1.24940 0.97170 0.96525 0.95114 1.69814 1.37441 1.02905 1.41889 0.86482 0.83446 0.78588 0.79129 1.19862 1.20947 1.20925 0.90363 0.89060 0.88979 0.80177 0.86737 0.88903 0.88580 0.88473 0.88905 0.90583 0.87601 0.75376 0.86438 0.86240 0.95374 0.88598 0.94473 0.94431 0.88646 0.95284 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 11.09 59.85 0.66 1.38 16 2 N -0.37 -4.00 4.01 -63.88 -0.26 -4.25 16 3 N -0.29 -3.52 12.58 30.63 0.39 -3.14 16 4 C 0.05 0.53 11.35 -17.36 -0.20 0.33 16 5 C -0.18 -2.07 5.76 -105.05 -0.61 -2.68 16 6 C -0.08 -0.83 5.95 -91.77 -0.55 -1.38 16 7 C -0.18 -1.49 10.02 -26.73 -0.27 -1.76 16 8 C -0.17 -1.70 10.23 -26.73 -0.27 -1.97 16 9 C 0.08 0.91 6.33 -82.26 -0.52 0.39 16 10 C 0.18 2.02 5.94 -5.19 -0.03 1.99 16 11 N -1.13 -14.25 5.88 -11.66 -0.07 -14.32 16 12 S 2.59 44.74 4.49 -107.50 -0.48 44.26 16 13 O -0.96 -19.35 15.70 -57.54 -0.90 -20.26 16 14 O -0.96 -18.75 15.11 -57.54 -0.87 -19.62 16 15 C -0.58 -10.49 5.02 37.16 0.19 -10.30 16 16 C 0.08 1.90 0.52 -155.66 -0.08 1.82 16 17 C -0.16 -3.93 7.78 37.16 0.29 -3.64 16 18 C -0.16 -3.88 7.77 37.15 0.29 -3.59 16 19 C -0.50 -12.72 8.01 -34.44 -0.28 -12.99 16 20 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 21 C 0.06 1.67 5.15 -17.82 -0.09 1.58 16 22 N -0.88 -23.55 9.35 55.43 0.52 -23.03 16 23 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.09 0.59 7.66 -51.93 -0.40 0.20 16 30 H 0.18 1.45 7.20 -52.49 -0.38 1.07 16 31 H 0.11 1.28 7.41 -51.93 -0.38 0.89 16 32 H 0.09 0.68 6.98 -51.93 -0.36 0.31 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.67 7.72 -51.93 -0.40 0.27 16 37 H 0.11 1.19 6.86 -51.93 -0.36 0.84 16 38 H 0.41 4.79 8.61 -34.47 -0.30 4.49 16 39 H 0.12 1.85 8.14 -51.92 -0.42 1.42 16 40 H 0.12 1.92 8.14 -51.92 -0.42 1.50 16 41 H 0.03 0.64 5.46 -51.93 -0.28 0.35 16 42 H 0.10 2.49 6.07 -51.92 -0.32 2.17 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 46 H 0.03 0.65 5.47 -51.93 -0.28 0.37 16 47 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 383.73 15.07 5.78 5.78 Total: -1.00 -32.61 383.73 -9.50 -42.11 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -7.12 Total: 8.20 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: -1.46 Total: -30.82 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.58 Total: -44.74 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -1.77 Total: -39.88 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 44.74 SS G_CDS: -0.48 Total: 44.26 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.61 -9.50 -42.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594852177.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.650 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds