Wall clock time and date at job start Sat Apr 11 2020 06:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.46914 * 2 1 4 4 N 1.30501 * 125.64695 * 89.97411 * 3 2 1 5 5 C 1.34127 * 109.25407 * 180.02562 * 4 3 2 6 6 S 1.76200 * 125.98956 * 180.02562 * 5 4 3 7 7 O 1.42105 * 106.40164 * 336.48306 * 6 5 4 8 8 O 1.42100 * 106.40559 * 203.56512 * 6 5 4 9 9 N 1.65605 * 107.22120 * 90.02204 * 6 5 4 10 10 C 1.46499 * 119.99780 * 270.00265 * 9 6 5 11 11 C 1.52996 * 109.47007 * 264.99520 * 10 9 6 12 12 C 1.46496 * 119.99928 * 89.99765 * 9 6 5 13 13 C 1.50706 * 109.47106 * 95.00107 * 12 9 6 14 14 H 1.07999 * 119.99515 * 0.02562 * 13 12 9 15 15 C 1.37870 * 120.00176 * 180.02562 * 13 12 9 16 16 N 1.31520 * 119.99883 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00043 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47293 * 89.99746 * 17 15 13 19 19 H 1.48504 * 109.47104 * 209.99992 * 17 15 13 20 20 H 1.48495 * 109.47249 * 329.99739 * 17 15 13 21 21 C 1.34667 * 108.02093 * 0.25924 * 5 4 3 22 22 N 1.35037 * 125.65124 * 269.99960 * 3 2 1 23 23 C 1.46501 * 126.39844 * 0.02562 * 22 3 2 24 24 C 1.52999 * 109.46600 * 85.00220 * 23 22 3 25 25 C 1.53004 * 117.49881 * 243.61990 * 24 23 22 26 26 C 1.52995 * 60.00189 * 252.51367 * 25 24 23 27 27 H 1.09002 * 109.46758 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47452 * 299.99673 * 1 2 3 29 29 H 1.09001 * 109.47215 * 60.00025 * 1 2 3 30 30 H 1.08996 * 109.47452 * 240.00327 * 2 1 3 31 31 H 1.09001 * 109.47215 * 119.99975 * 2 1 3 32 32 H 1.09001 * 109.47590 * 24.99627 * 10 9 6 33 33 H 1.09002 * 109.46929 * 145.00208 * 10 9 6 34 34 H 1.09000 * 109.47246 * 180.02562 * 11 10 9 35 35 H 1.09008 * 109.47400 * 300.00573 * 11 10 9 36 36 H 1.09005 * 109.47154 * 60.00297 * 11 10 9 37 37 H 1.09001 * 109.47001 * 335.00398 * 12 9 6 38 38 H 1.09000 * 109.47574 * 215.00614 * 12 9 6 39 39 H 0.97004 * 119.99507 * 180.02562 * 16 15 13 40 40 H 1.08001 * 126.58993 * 179.69661 * 21 5 4 41 41 H 1.08996 * 109.47171 * 204.99841 * 23 22 3 42 42 H 1.08994 * 109.47322 * 325.00516 * 23 22 3 43 43 H 1.08997 * 115.55349 * 29.33312 * 24 23 22 44 44 H 1.09003 * 117.49884 * 0.02562 * 25 24 23 45 45 H 1.08998 * 117.50002 * 145.02030 * 25 24 23 46 46 H 1.08998 * 117.50081 * 252.51072 * 26 25 24 47 47 H 1.09005 * 117.51889 * 107.48048 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2853 2.1381 1.0605 5 6 2.7138 3.3514 0.6819 6 16 3.1789 4.6673 1.7574 7 8 2.5180 4.4286 2.9926 8 8 3.0248 5.8677 1.0128 9 7 4.7999 4.5069 2.0559 10 6 5.2596 3.7055 3.1928 11 6 5.5002 4.6189 4.3964 12 6 5.7742 5.1664 1.1829 13 6 6.1624 6.4957 1.7773 14 1 5.7272 6.8169 2.7121 15 6 7.0730 7.3018 1.1278 16 7 7.6025 6.9108 -0.0108 17 14 7.5548 8.9492 1.8651 18 1 8.7271 8.7679 2.7584 19 1 7.9043 9.8958 0.7756 20 1 6.4159 9.4935 2.6472 21 6 2.7213 3.3893 -0.6642 22 7 2.2946 2.1629 -1.0973 23 6 2.1436 1.7374 -2.4910 24 6 0.6965 1.9561 -2.9369 25 6 -0.1205 0.7192 -3.3159 26 6 0.3602 1.6813 -4.4040 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.5014 2.9642 3.4450 33 1 6.1886 3.2000 2.9289 34 1 5.8427 4.0227 5.2422 35 1 6.2584 5.3603 4.1442 36 1 4.5713 5.1245 4.6603 37 1 5.3323 5.3236 0.1989 38 1 6.6600 4.5385 1.0873 39 1 8.2435 7.4778 -0.4676 40 1 3.0103 4.2259 -1.2830 41 1 2.8111 2.3223 -3.1238 42 1 2.3946 0.6803 -2.5774 43 1 0.1716 2.7751 -2.4452 44 1 0.3728 -0.2504 -3.2471 45 1 -1.1832 0.7242 -3.0733 46 1 -0.3861 2.3193 -4.8773 47 1 1.1701 1.3451 -5.0516 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595317677.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:07 Heat of formation + Delta-G solvation = 3.621038 kcal Electronic energy + Delta-G solvation = -28706.016010 eV Core-core repulsion = 24824.704637 eV Total energy + Delta-G solvation = -3881.311373 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.24632 -38.06162 -36.39835 -35.92756 -34.97233 -33.98266 -33.70439 -32.52530 -29.70633 -28.98850 -27.54169 -26.65592 -24.12039 -22.95195 -22.70223 -22.19619 -21.69294 -21.41811 -19.79264 -18.41629 -17.44616 -16.69360 -16.45865 -15.96040 -15.83679 -15.35666 -15.23065 -14.69526 -14.61385 -14.31327 -14.22999 -13.66505 -13.50521 -13.30241 -12.96724 -12.82775 -12.59547 -12.20909 -12.12023 -12.04872 -11.79440 -11.68466 -11.42134 -11.35887 -11.24462 -11.10644 -11.06414 -10.93528 -10.87617 -10.85770 -10.57021 -10.34853 -10.31003 -9.95178 -9.83525 -9.78140 -9.51830 -8.66388 -8.38535 -7.97453 -6.01110 -4.03383 1.19696 1.76053 2.50943 2.73198 3.24912 3.35656 3.41790 3.48484 3.94947 4.09030 4.23215 4.29037 4.37118 4.48300 4.53645 4.60296 4.62072 4.86832 4.91146 4.99969 5.07009 5.14821 5.15397 5.30858 5.33530 5.39014 5.54745 5.60744 5.61034 5.63821 5.66396 5.78979 5.98639 6.03939 6.06734 6.13594 6.32147 6.37903 6.53676 6.84676 7.03579 7.10864 7.29482 7.49172 7.71770 7.89849 7.97919 8.27525 8.99174 9.60971 11.07678 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015307 B = 0.003424 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.808388 B = 8174.662592 C = 9260.243194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.033 4.033 3 C 0.204 3.796 4 N -0.412 5.412 5 C -0.553 4.553 6 S 2.715 3.285 7 O -0.963 6.963 8 O -0.946 6.946 9 N -0.981 5.981 10 C 0.135 3.865 11 C -0.172 4.172 12 C 0.256 3.744 13 C -0.521 4.521 14 H 0.065 0.935 15 C 0.061 3.939 16 N -0.899 5.899 17 Si 0.894 3.106 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.271 1.271 21 C 0.068 3.932 22 N -0.449 5.449 23 C 0.131 3.869 24 C -0.179 4.179 25 C -0.173 4.173 26 C -0.167 4.167 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.262 0.738 40 H 0.194 0.806 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.113 0.887 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.235 -16.456 -7.786 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.073 4.073 3 C -0.062 4.062 4 N -0.129 5.129 5 C -0.761 4.761 6 S 2.799 3.201 7 O -0.953 6.953 8 O -0.935 6.935 9 N -0.821 5.821 10 C 0.009 3.991 11 C -0.231 4.231 12 C 0.134 3.866 13 C -0.560 4.560 14 H 0.083 0.917 15 C -0.141 4.141 16 N -0.538 5.538 17 Si 0.722 3.278 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.196 1.196 21 C -0.072 4.072 22 N -0.130 5.130 23 C 0.008 3.992 24 C -0.198 4.198 25 C -0.210 4.210 26 C -0.204 4.204 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.211 0.789 41 H 0.121 0.879 42 H 0.115 0.885 43 H 0.131 0.869 44 H 0.117 0.883 45 H 0.116 0.884 46 H 0.118 0.882 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.755 -16.113 -6.956 21.696 hybrid contribution 0.633 0.696 -1.159 1.493 sum -12.122 -15.417 -8.116 21.225 Atomic orbital electron populations 1.21845 0.93873 1.02202 1.03143 1.19930 0.96556 0.86928 1.03844 1.23580 1.04287 0.96880 0.81415 1.70285 1.14001 1.01178 1.27395 1.34069 1.20467 1.14019 1.07537 1.01546 0.72722 0.72654 0.73164 1.93494 1.73908 1.86077 1.41840 1.93602 1.85626 1.40573 1.73738 1.57463 1.23743 1.63023 1.37873 1.20988 0.99803 0.92649 0.85691 1.22261 1.02991 1.00945 0.96861 1.19076 0.87085 0.92066 0.88337 1.21555 1.24193 1.02425 1.07876 0.91697 1.24921 0.96084 0.98211 0.94845 1.69926 1.30047 1.37920 1.15931 0.86548 0.78808 0.83635 0.78806 1.20684 1.21196 1.19615 1.22766 1.00104 0.89029 0.95304 1.45605 1.48392 1.11529 1.07481 1.21543 0.96177 1.02182 0.79283 1.22663 0.95781 1.01725 0.99582 1.23104 1.00581 0.94203 1.03064 1.22996 1.03707 1.03052 0.90677 0.91730 0.91750 0.92096 0.90637 0.88585 0.91463 0.91286 0.93063 0.90391 0.92679 0.94621 0.94729 0.92854 0.78925 0.87904 0.88536 0.86913 0.88340 0.88373 0.88190 0.88251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.89 37.16 0.37 -0.90 16 2 C -0.03 -0.32 6.24 -27.88 -0.17 -0.49 16 3 C 0.20 2.86 7.16 -155.42 -1.11 1.74 16 4 N -0.41 -7.45 11.25 -10.02 -0.11 -7.56 16 5 C -0.55 -10.47 7.13 -17.81 -0.13 -10.60 16 6 S 2.72 59.52 5.75 -107.50 -0.62 58.91 16 7 O -0.96 -22.46 16.99 -57.17 -0.97 -23.43 16 8 O -0.95 -23.13 16.81 -57.17 -0.96 -24.09 16 9 N -0.98 -21.57 2.80 -115.66 -0.32 -21.90 16 10 C 0.13 2.58 6.09 -4.04 -0.02 2.56 16 11 C -0.17 -3.22 9.83 37.16 0.37 -2.86 16 12 C 0.26 6.45 5.12 -5.19 -0.03 6.42 16 13 C -0.52 -14.48 8.41 -34.44 -0.29 -14.77 16 14 H 0.06 1.80 6.89 -52.49 -0.36 1.44 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.90 -25.97 13.29 55.43 0.74 -25.23 16 17 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 21 C 0.07 1.08 11.31 -16.56 -0.19 0.89 16 22 N -0.45 -5.76 2.75 -113.91 -0.31 -6.07 16 23 C 0.13 1.08 6.17 -4.04 -0.02 1.05 16 24 C -0.18 -1.33 5.61 -90.62 -0.51 -1.83 16 25 C -0.17 -0.96 8.39 -26.73 -0.22 -1.18 16 26 C -0.17 -0.93 10.25 -26.73 -0.27 -1.20 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.48 5.75 -51.93 -0.30 0.18 16 30 H 0.08 0.52 7.17 -51.93 -0.37 0.15 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.20 7.61 -51.93 -0.40 0.81 16 33 H 0.07 1.22 8.00 -51.93 -0.42 0.80 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.59 6.59 -51.92 -0.34 1.25 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.04 0.93 7.61 -51.93 -0.40 0.54 16 38 H 0.03 0.89 8.00 -51.93 -0.42 0.47 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.19 2.77 8.06 -52.49 -0.42 2.35 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.10 0.60 6.94 -51.93 -0.36 0.24 16 43 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.10 0.45 8.03 -51.93 -0.42 0.03 16 45 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 397.93 15.07 6.00 6.00 Total: -1.00 -35.64 397.93 -11.48 -47.12 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -7.56 Total: -0.99 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -2.34 Total: -19.54 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: -0.01 Total: -60.77 kcal Atomic # 8 Polarization: -45.59 SS G_CDS: -1.93 Total: -47.52 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 59.52 SS G_CDS: -0.62 Total: 58.91 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.64 -11.48 -47.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595317677.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.745 kcal (2) G-P(sol) polarization free energy of solvation -35.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds