Wall clock time and date at job start Sat Apr 11 2020 06:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.46914 * 2 1 4 4 N 1.30501 * 125.64695 * 89.97411 * 3 2 1 5 5 C 1.34127 * 109.25407 * 180.02562 * 4 3 2 6 6 S 1.76200 * 125.98956 * 180.02562 * 5 4 3 7 7 O 1.42105 * 106.40164 * 336.48306 * 6 5 4 8 8 O 1.42100 * 106.40559 * 203.56512 * 6 5 4 9 9 N 1.65605 * 107.22120 * 90.02204 * 6 5 4 10 10 C 1.46499 * 119.99780 * 270.00265 * 9 6 5 11 11 C 1.52996 * 109.47007 * 264.99520 * 10 9 6 12 12 C 1.46496 * 119.99928 * 89.99765 * 9 6 5 13 13 C 1.50706 * 109.47106 * 95.00107 * 12 9 6 14 14 H 1.07999 * 119.99515 * 0.02562 * 13 12 9 15 15 C 1.37870 * 120.00176 * 180.02562 * 13 12 9 16 16 N 1.31520 * 119.99883 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00043 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47293 * 89.99746 * 17 15 13 19 19 H 1.48504 * 109.47104 * 209.99992 * 17 15 13 20 20 H 1.48495 * 109.47249 * 329.99739 * 17 15 13 21 21 C 1.34667 * 108.02093 * 0.25924 * 5 4 3 22 22 N 1.35037 * 125.65124 * 269.99960 * 3 2 1 23 23 C 1.46501 * 126.39844 * 0.02562 * 22 3 2 24 24 C 1.52999 * 109.46600 * 85.00220 * 23 22 3 25 25 C 1.53004 * 117.49881 * 243.61990 * 24 23 22 26 26 C 1.52995 * 60.00189 * 252.51367 * 25 24 23 27 27 H 1.09002 * 109.46758 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47452 * 299.99673 * 1 2 3 29 29 H 1.09001 * 109.47215 * 60.00025 * 1 2 3 30 30 H 1.08996 * 109.47452 * 240.00327 * 2 1 3 31 31 H 1.09001 * 109.47215 * 119.99975 * 2 1 3 32 32 H 1.09001 * 109.47590 * 24.99627 * 10 9 6 33 33 H 1.09002 * 109.46929 * 145.00208 * 10 9 6 34 34 H 1.09000 * 109.47246 * 180.02562 * 11 10 9 35 35 H 1.09008 * 109.47400 * 300.00573 * 11 10 9 36 36 H 1.09005 * 109.47154 * 60.00297 * 11 10 9 37 37 H 1.09001 * 109.47001 * 335.00398 * 12 9 6 38 38 H 1.09000 * 109.47574 * 215.00614 * 12 9 6 39 39 H 0.97004 * 119.99507 * 180.02562 * 16 15 13 40 40 H 1.08001 * 126.58993 * 179.69661 * 21 5 4 41 41 H 1.08996 * 109.47171 * 204.99841 * 23 22 3 42 42 H 1.08994 * 109.47322 * 325.00516 * 23 22 3 43 43 H 1.08997 * 115.55349 * 29.33312 * 24 23 22 44 44 H 1.09003 * 117.49884 * 0.02562 * 25 24 23 45 45 H 1.08998 * 117.50002 * 145.02030 * 25 24 23 46 46 H 1.08998 * 117.50081 * 252.51072 * 26 25 24 47 47 H 1.09005 * 117.51889 * 107.48048 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2853 2.1381 1.0605 5 6 2.7138 3.3514 0.6819 6 16 3.1789 4.6673 1.7574 7 8 2.5180 4.4286 2.9926 8 8 3.0248 5.8677 1.0128 9 7 4.7999 4.5069 2.0559 10 6 5.2596 3.7055 3.1928 11 6 5.5002 4.6189 4.3964 12 6 5.7742 5.1664 1.1829 13 6 6.1624 6.4957 1.7773 14 1 5.7272 6.8169 2.7121 15 6 7.0730 7.3018 1.1278 16 7 7.6025 6.9108 -0.0108 17 14 7.5548 8.9492 1.8651 18 1 8.7271 8.7679 2.7584 19 1 7.9043 9.8958 0.7756 20 1 6.4159 9.4935 2.6472 21 6 2.7213 3.3893 -0.6642 22 7 2.2946 2.1629 -1.0973 23 6 2.1436 1.7374 -2.4910 24 6 0.6965 1.9561 -2.9369 25 6 -0.1205 0.7192 -3.3159 26 6 0.3602 1.6813 -4.4040 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.5014 2.9642 3.4450 33 1 6.1886 3.2000 2.9289 34 1 5.8427 4.0227 5.2422 35 1 6.2584 5.3603 4.1442 36 1 4.5713 5.1245 4.6603 37 1 5.3323 5.3236 0.1989 38 1 6.6600 4.5385 1.0873 39 1 8.2435 7.4778 -0.4676 40 1 3.0103 4.2259 -1.2830 41 1 2.8111 2.3223 -3.1238 42 1 2.3946 0.6803 -2.5774 43 1 0.1716 2.7751 -2.4452 44 1 0.3728 -0.2504 -3.2471 45 1 -1.1832 0.7242 -3.0733 46 1 -0.3861 2.3193 -4.8773 47 1 1.1701 1.3451 -5.0516 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595317677.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:06 Heat of formation + Delta-G solvation = -19.570654 kcal Electronic energy + Delta-G solvation = -28707.021678 eV Core-core repulsion = 24824.704637 eV Total energy + Delta-G solvation = -3882.317040 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.38917 -38.61875 -38.21161 -37.70697 -36.80155 -34.82282 -34.66704 -34.61467 -31.43502 -30.10882 -28.68005 -28.33856 -24.96780 -24.66726 -23.64827 -23.37583 -23.10887 -22.14465 -20.71128 -19.87014 -18.93366 -18.57551 -18.25363 -17.13447 -17.04462 -16.81175 -16.34559 -16.14181 -15.59718 -15.40597 -15.24208 -15.09389 -14.71883 -14.60451 -14.50043 -13.98727 -13.93510 -13.60984 -13.33713 -13.14367 -13.10226 -12.95701 -12.90274 -12.81456 -12.75156 -12.66842 -12.46351 -12.34297 -12.22044 -12.12315 -12.03870 -11.62701 -11.57874 -11.45605 -11.27139 -10.96610 -10.84929 -10.53419 -9.94654 -9.76448 -8.15458 -6.24680 -0.48788 0.51046 1.41755 1.43661 1.49308 1.54640 1.55389 2.28884 2.45763 2.77405 2.87268 3.14057 3.17468 3.42822 3.61118 3.71868 3.76770 3.94160 4.01022 4.04754 4.10627 4.25517 4.32555 4.35084 4.47712 4.50837 4.55703 4.63015 4.72833 4.78429 4.92747 4.96649 4.99178 4.99615 5.06400 5.12430 5.17467 5.19246 5.23371 5.24313 5.35392 5.48488 5.59701 5.76577 5.96026 6.04459 6.16399 6.69998 6.82373 7.42724 8.92598 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015307 B = 0.003424 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.808388 B = 8174.662592 C = 9260.243194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.035 4.035 3 C 0.216 3.784 4 N -0.455 5.455 5 C -0.579 4.579 6 S 2.725 3.275 7 O -0.986 6.986 8 O -0.983 6.983 9 N -0.986 5.986 10 C 0.127 3.873 11 C -0.169 4.169 12 C 0.271 3.729 13 C -0.538 4.538 14 H 0.057 0.943 15 C 0.014 3.986 16 N -0.925 5.925 17 Si 0.952 3.048 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.275 1.275 21 C 0.068 3.932 22 N -0.438 5.438 23 C 0.123 3.877 24 C -0.197 4.197 25 C -0.161 4.161 26 C -0.158 4.158 27 H 0.094 0.906 28 H 0.037 0.963 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.057 0.943 36 H 0.039 0.961 37 H 0.020 0.980 38 H 0.029 0.971 39 H 0.266 0.734 40 H 0.201 0.799 41 H 0.112 0.888 42 H 0.128 0.872 43 H 0.086 0.914 44 H 0.118 0.882 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.470 -18.845 -9.113 24.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.074 4.074 3 C -0.051 4.051 4 N -0.173 5.173 5 C -0.791 4.791 6 S 2.814 3.186 7 O -0.976 6.976 8 O -0.973 6.973 9 N -0.825 5.825 10 C 0.002 3.998 11 C -0.228 4.228 12 C 0.148 3.852 13 C -0.577 4.577 14 H 0.075 0.925 15 C -0.185 4.185 16 N -0.565 5.565 17 Si 0.777 3.223 18 H -0.192 1.192 19 H -0.204 1.204 20 H -0.200 1.200 21 C -0.074 4.074 22 N -0.117 5.117 23 C 0.003 3.997 24 C -0.216 4.216 25 C -0.198 4.198 26 C -0.195 4.195 27 H 0.113 0.887 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.131 0.869 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.038 0.962 38 H 0.047 0.953 39 H 0.075 0.925 40 H 0.218 0.782 41 H 0.130 0.870 42 H 0.146 0.854 43 H 0.105 0.895 44 H 0.136 0.864 45 H 0.117 0.883 46 H 0.117 0.883 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.980 -18.483 -8.255 24.047 hybrid contribution 0.606 1.299 -0.836 1.659 sum -12.375 -17.185 -9.092 23.046 Atomic orbital electron populations 1.21827 0.92864 1.03838 1.02096 1.20243 0.97262 0.84083 1.05786 1.24452 1.01822 0.98076 0.80733 1.70209 1.16141 1.01229 1.29732 1.33180 1.23620 1.14219 1.08032 1.00710 0.72392 0.72687 0.72786 1.93448 1.74209 1.86585 1.43376 1.93542 1.86087 1.43380 1.74302 1.57346 1.23152 1.63483 1.38534 1.21238 1.00926 0.92736 0.84934 1.22230 1.01609 1.00853 0.98084 1.18700 0.87160 0.91329 0.88022 1.21836 1.24376 1.03741 1.07792 0.92499 1.25671 0.96100 1.01453 0.95280 1.70008 1.30505 1.39160 1.16817 0.85649 0.78635 0.79682 0.78338 1.19239 1.20441 1.19987 1.22904 0.99442 0.90565 0.94528 1.45855 1.46600 1.09974 1.09272 1.21987 0.97099 1.04071 0.76579 1.22489 0.95339 1.02510 1.01214 1.23226 1.00511 0.94202 1.01816 1.23087 1.03933 1.02703 0.89813 0.88708 0.94330 0.91673 0.86943 0.88361 0.90192 0.89677 0.89386 0.92411 0.94206 0.96210 0.95343 0.92514 0.78168 0.86984 0.85433 0.89527 0.86369 0.88312 0.88275 0.86763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.89 71.98 0.71 -1.34 16 2 C -0.03 -0.56 6.24 29.85 0.19 -0.37 16 3 C 0.22 5.76 7.16 138.13 0.99 6.75 16 4 N -0.46 -16.57 11.25 -185.63 -2.09 -18.66 16 5 C -0.58 -22.54 7.13 83.52 0.60 -21.95 16 6 S 2.72 124.88 5.75 -56.49 -0.32 124.56 16 7 O -0.99 -47.91 16.99 -128.00 -2.17 -50.08 16 8 O -0.98 -50.68 16.81 -128.00 -2.15 -52.83 16 9 N -0.99 -44.79 2.80 -519.85 -1.45 -46.24 16 10 C 0.13 4.90 6.09 86.38 0.53 5.42 16 11 C -0.17 -6.38 9.83 71.98 0.71 -5.67 16 12 C 0.27 14.10 5.12 85.64 0.44 14.54 16 13 C -0.54 -30.67 8.41 25.60 0.22 -30.45 16 14 H 0.06 3.26 6.89 -2.91 -0.02 3.24 16 15 C 0.01 0.80 5.46 84.65 0.46 1.26 16 16 N -0.92 -53.99 13.29 21.45 0.28 -53.71 16 17 Si 0.95 45.01 29.54 68.60 2.03 47.04 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 21 C 0.07 2.22 11.31 83.09 0.94 3.16 16 22 N -0.44 -10.64 2.75 -514.29 -1.41 -12.05 16 23 C 0.12 1.69 6.17 86.38 0.53 2.23 16 24 C -0.20 -2.50 5.61 -10.79 -0.06 -2.56 16 25 C -0.16 -1.22 8.39 30.59 0.26 -0.97 16 26 C -0.16 -1.31 10.25 30.59 0.31 -1.00 16 27 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.84 5.75 -2.39 -0.01 0.83 16 30 H 0.11 0.98 7.17 -2.39 -0.02 0.96 16 31 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.08 2.88 7.61 -2.39 -0.02 2.86 16 33 H 0.08 2.98 8.00 -2.39 -0.02 2.96 16 34 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.06 2.40 6.59 -2.38 -0.02 2.38 16 36 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.02 1.09 7.61 -2.39 -0.02 1.07 16 38 H 0.03 1.50 8.00 -2.39 -0.02 1.48 16 39 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 40 H 0.20 5.98 8.06 -2.91 -0.02 5.95 16 41 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.13 0.99 6.94 -2.39 -0.02 0.97 16 43 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.12 0.46 8.03 -2.39 -0.02 0.45 16 45 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 Total: -1.00 -79.82 397.93 0.47 -79.35 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.96 Total: 13.57 kcal Atomic # 6 Polarization: -37.75 SS G_CDS: 6.81 Total: -30.94 kcal Atomic # 7 Polarization: -125.99 SS G_CDS: -4.67 Total: -130.66 kcal Atomic # 8 Polarization: -98.59 SS G_CDS: -4.33 Total: -102.92 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 124.88 SS G_CDS: -0.32 Total: 124.56 kcal Total: -79.82 0.47 -79.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595317677.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.780 kcal (2) G-P(sol) polarization free energy of solvation -79.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds