Wall clock time and date at job start Sat Apr 11 2020 06:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.46942 * 2 1 4 4 N 1.30500 * 125.65374 * 270.27352 * 3 2 1 5 5 C 1.34120 * 109.25830 * 180.14628 * 4 3 2 6 6 S 1.76203 * 125.99090 * 179.88072 * 5 4 3 7 7 O 1.42098 * 106.40333 * 160.32007 * 6 5 4 8 8 O 1.42104 * 106.40099 * 27.40157 * 6 5 4 9 9 N 1.65592 * 107.21930 * 273.86126 * 6 5 4 10 10 C 1.46501 * 120.00183 * 65.12514 * 9 6 5 11 11 H 1.08996 * 109.47109 * 336.00326 * 10 9 6 12 12 C 1.50701 * 109.47420 * 96.00535 * 10 9 6 13 13 H 1.08000 * 119.99546 * 0.02562 * 12 10 9 14 14 C 1.37872 * 119.99851 * 179.97438 * 12 10 9 15 15 N 1.31510 * 120.00621 * 0.02562 * 14 12 10 16 16 Si 1.86810 * 119.99688 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46815 * 60.00361 * 16 14 12 18 18 H 1.48494 * 109.47036 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47076 * 300.00334 * 16 14 12 20 20 C 1.53007 * 109.46885 * 216.00519 * 10 9 6 21 21 C 1.52997 * 109.47361 * 63.37371 * 20 10 9 22 22 C 1.34667 * 108.02180 * 359.62159 * 5 4 3 23 23 N 1.35041 * 125.65009 * 90.00401 * 3 2 1 24 24 C 1.46510 * 126.39761 * 359.97438 * 23 3 2 25 25 C 1.52999 * 109.47060 * 84.97547 * 24 23 3 26 26 C 1.52999 * 117.49575 * 243.62493 * 25 24 23 27 27 C 1.52998 * 117.49983 * 175.00217 * 25 24 23 28 28 H 1.09000 * 109.47029 * 59.99344 * 1 2 3 29 29 H 1.09000 * 109.47071 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47002 * 300.00281 * 1 2 3 31 31 H 1.09000 * 109.46966 * 240.00472 * 2 1 3 32 32 H 1.08990 * 109.47101 * 120.00101 * 2 1 3 33 33 H 0.97008 * 120.00375 * 245.12466 * 9 6 5 34 34 H 0.97002 * 120.00214 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.47226 * 303.37296 * 20 10 9 36 36 H 1.09003 * 109.46765 * 183.37312 * 20 10 9 37 37 H 1.09006 * 109.46763 * 54.84025 * 21 20 10 38 38 H 1.09004 * 109.47164 * 294.84516 * 21 20 10 39 39 H 1.08993 * 109.47590 * 174.83912 * 21 20 10 40 40 H 1.08004 * 126.59592 * 180.19916 * 22 5 4 41 41 H 1.09000 * 109.47159 * 204.97856 * 24 23 3 42 42 H 1.09000 * 109.46681 * 324.97588 * 24 23 3 43 43 H 1.09001 * 115.54925 * 29.32632 * 25 24 23 44 44 H 1.08995 * 117.50552 * 359.97438 * 26 25 24 45 45 H 1.09010 * 117.49699 * 145.02449 * 26 25 24 46 46 H 1.08998 * 117.50026 * 214.97912 * 27 25 24 47 47 H 1.09000 * 117.49533 * 359.97296 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2811 2.1397 -1.0604 5 6 2.7147 3.3511 -0.6818 6 16 3.1791 4.6674 -1.7573 7 8 3.1196 5.8577 -0.9835 8 8 2.4420 4.4834 -2.9582 9 7 4.7726 4.4425 -2.1476 10 6 5.1774 3.2703 -2.9275 11 1 4.4405 2.4773 -2.8006 12 6 5.2679 3.6434 -4.3848 13 1 5.0465 4.6528 -4.6985 14 6 5.6344 2.6963 -5.3174 15 7 5.9045 1.4672 -4.9353 16 14 5.7459 3.1586 -7.1239 17 1 6.7492 4.2396 -7.2971 18 1 6.1563 1.9704 -7.9144 19 1 4.4204 3.6331 -7.5962 20 6 6.5427 2.7805 -2.4407 21 6 6.4310 2.3227 -0.9851 22 6 2.7275 3.3872 0.6643 23 7 2.2947 2.1629 1.0973 24 6 2.1438 1.7373 2.4911 25 6 3.4058 0.9964 2.9376 26 6 3.2620 -0.4789 3.3165 27 6 3.4937 0.5713 4.4047 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.4381 5.0869 -1.8598 34 1 6.1620 0.8008 -5.5915 35 1 7.2665 3.5924 -2.5116 36 1 6.8712 1.9458 -3.0600 37 1 5.6425 1.5750 -0.8989 38 1 6.1917 3.1776 -0.3526 39 1 7.3790 1.8892 -0.6667 40 1 3.0229 4.2215 1.2833 41 1 1.9929 2.6119 3.1238 42 1 1.2833 1.0738 2.5772 43 1 4.3293 1.3024 2.4460 44 1 2.2683 -0.9217 3.2482 45 1 4.0911 -1.1439 3.0743 46 1 4.4751 0.5974 4.8783 47 1 2.6526 0.8200 5.0519 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595328346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:17 Heat of formation + Delta-G solvation = -3.014375 kcal Electronic energy + Delta-G solvation = -29139.130606 eV Core-core repulsion = 25257.531500 eV Total energy + Delta-G solvation = -3881.599106 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.16492 -37.99978 -36.42307 -35.76324 -34.95623 -33.91471 -33.59773 -32.01163 -30.51224 -28.91737 -27.51102 -26.47696 -23.99348 -22.93058 -22.88108 -22.18593 -21.32011 -20.10871 -19.78464 -18.66653 -17.69028 -16.78419 -16.36342 -15.94378 -15.67787 -15.39765 -15.14047 -14.62641 -14.49178 -14.30523 -14.15242 -13.65264 -13.45880 -13.31417 -12.99534 -12.86861 -12.56841 -12.10588 -11.98441 -11.73895 -11.72600 -11.54290 -11.34364 -11.22514 -11.14833 -11.08230 -11.04534 -10.79637 -10.76117 -10.65084 -10.56795 -10.13068 -9.84085 -9.74978 -9.71708 -9.66345 -9.51725 -8.57977 -8.27283 -8.07673 -5.91178 -3.96173 1.25456 1.79636 2.55125 2.88343 3.28814 3.43389 3.46220 3.52709 4.06876 4.14546 4.27640 4.37199 4.44044 4.52467 4.59137 4.61376 4.67447 4.83935 5.00200 5.03037 5.15273 5.17788 5.19247 5.38617 5.40308 5.44456 5.63770 5.65372 5.69950 5.76105 5.92230 6.07646 6.15261 6.17077 6.20006 6.40443 6.46102 6.65106 6.85970 7.05714 7.11959 7.24568 7.72221 7.78544 8.03179 8.07421 8.26328 8.40909 9.05405 9.68424 11.13679 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012825 B = 0.003854 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.764722 B = 7264.261493 C = 7568.084917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 C 0.208 3.792 4 N -0.394 5.394 5 C -0.541 4.541 6 S 2.718 3.282 7 O -0.990 6.990 8 O -0.936 6.936 9 N -1.098 6.098 10 C 0.280 3.720 11 H 0.054 0.946 12 C -0.516 4.516 13 H 0.062 0.938 14 C 0.064 3.936 15 N -0.893 5.893 16 Si 0.895 3.105 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.274 1.274 20 C -0.125 4.125 21 C -0.143 4.143 22 C 0.054 3.946 23 N -0.449 5.449 24 C 0.132 3.868 25 C -0.179 4.179 26 C -0.173 4.173 27 C -0.168 4.168 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.403 0.597 34 H 0.261 0.739 35 H 0.040 0.960 36 H 0.105 0.895 37 H 0.041 0.959 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.189 0.811 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.115 0.885 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.099 0.901 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.917 -4.637 20.339 21.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 C -0.057 4.057 4 N -0.111 5.111 5 C -0.751 4.751 6 S 2.802 3.198 7 O -0.980 6.980 8 O -0.926 6.926 9 N -0.859 5.859 10 C 0.176 3.824 11 H 0.072 0.928 12 C -0.556 4.556 13 H 0.080 0.920 14 C -0.138 4.138 15 N -0.533 5.533 16 Si 0.723 3.277 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.200 1.200 20 C -0.165 4.165 21 C -0.201 4.201 22 C -0.086 4.086 23 N -0.130 5.130 24 C 0.009 3.991 25 C -0.198 4.198 26 C -0.210 4.210 27 C -0.205 4.205 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.236 0.764 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.123 0.877 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.206 0.794 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.133 0.867 44 H 0.116 0.884 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.693 -4.631 19.239 20.890 hybrid contribution 0.725 0.101 0.561 0.923 sum -5.967 -4.529 19.800 21.170 Atomic orbital electron populations 1.21759 0.94070 1.02187 1.02536 1.20004 0.96203 0.87160 1.04473 1.23626 1.04158 0.96829 0.81124 1.70420 1.12856 1.00802 1.26977 1.33803 1.20158 1.14227 1.06886 1.01256 0.73540 0.71795 0.73221 1.93508 1.87358 1.43836 1.73310 1.93592 1.70678 1.85375 1.42907 1.55533 1.25418 1.36790 1.68184 1.18602 0.93464 0.81365 0.88945 0.92808 1.21486 1.45546 0.97209 0.91339 0.91957 1.24864 0.95146 0.94856 0.98912 1.69837 1.47042 1.02346 1.34043 0.86601 0.78645 0.77626 0.84818 1.20376 1.21404 1.19986 1.21875 0.98917 1.02199 0.93506 1.21793 0.99440 0.99603 0.99229 1.22574 1.01499 0.89342 0.95145 1.45626 1.48574 1.11445 1.07355 1.21513 0.97495 1.00666 0.79398 1.22669 0.99590 0.98162 0.99339 1.23110 1.03568 0.91420 1.02938 1.22971 1.03649 1.03255 0.90661 0.91415 0.91579 0.93271 0.88105 0.90322 0.76420 0.92884 0.94170 0.87719 0.93984 0.94657 0.94837 0.79436 0.88306 0.88633 0.86721 0.88369 0.88224 0.88221 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.89 37.16 0.37 -1.06 16 2 C -0.04 -0.45 6.09 -27.88 -0.17 -0.62 16 3 C 0.21 3.18 7.16 -155.42 -1.11 2.06 16 4 N -0.39 -7.86 11.25 -10.02 -0.11 -7.98 16 5 C -0.54 -10.28 6.99 -17.82 -0.12 -10.41 16 6 S 2.72 57.72 5.81 -107.50 -0.62 57.10 16 7 O -0.99 -20.47 17.81 -57.17 -1.02 -21.49 16 8 O -0.94 -24.12 17.77 -57.17 -1.02 -25.14 16 9 N -1.10 -23.31 4.92 -5.88 -0.03 -23.34 16 10 C 0.28 6.98 2.17 -69.08 -0.15 6.83 16 11 H 0.05 1.48 7.86 -51.93 -0.41 1.08 16 12 C -0.52 -14.54 8.84 -34.44 -0.30 -14.84 16 13 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 14 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 15 N -0.89 -25.44 11.30 55.43 0.63 -24.81 16 16 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 20 C -0.13 -2.85 5.37 -26.73 -0.14 -3.00 16 21 C -0.14 -2.73 9.72 37.16 0.36 -2.37 16 22 C 0.05 0.80 11.27 -16.56 -0.19 0.62 16 23 N -0.45 -5.71 2.75 -113.90 -0.31 -6.02 16 24 C 0.13 1.06 5.96 -4.04 -0.02 1.03 16 25 C -0.18 -1.39 6.01 -90.62 -0.54 -1.93 16 26 C -0.17 -1.11 9.68 -26.73 -0.26 -1.37 16 27 C -0.17 -0.96 10.25 -26.73 -0.27 -1.23 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.08 0.69 7.32 -51.93 -0.38 0.31 16 33 H 0.40 7.41 8.85 -34.47 -0.30 7.10 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 2.68 5.99 -51.93 -0.31 2.37 16 37 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.03 0.60 7.85 -51.93 -0.41 0.19 16 39 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.19 2.19 8.06 -52.48 -0.42 1.76 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.10 0.61 7.65 -51.93 -0.40 0.21 16 43 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.10 0.52 8.03 -51.93 -0.42 0.10 16 45 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 46 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 402.61 15.07 6.07 6.07 Total: -1.00 -35.86 402.61 -11.77 -47.63 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -7.67 Total: 5.49 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: -2.66 Total: -24.59 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: 0.17 Total: -62.15 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -2.03 Total: -46.63 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 57.72 SS G_CDS: -0.62 Total: 57.10 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.86 -11.77 -47.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595328346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.613 kcal (2) G-P(sol) polarization free energy of solvation -35.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds