Wall clock time and date at job start Sat Apr 11 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.46942 * 2 1 4 4 N 1.30500 * 125.65374 * 270.27352 * 3 2 1 5 5 C 1.34120 * 109.25830 * 180.14628 * 4 3 2 6 6 S 1.76203 * 125.99090 * 179.88072 * 5 4 3 7 7 O 1.42098 * 106.40333 * 160.32007 * 6 5 4 8 8 O 1.42104 * 106.40099 * 27.40157 * 6 5 4 9 9 N 1.65592 * 107.21930 * 273.86126 * 6 5 4 10 10 C 1.46501 * 120.00183 * 65.12514 * 9 6 5 11 11 H 1.08996 * 109.47109 * 336.00326 * 10 9 6 12 12 C 1.50701 * 109.47420 * 96.00535 * 10 9 6 13 13 H 1.08000 * 119.99546 * 0.02562 * 12 10 9 14 14 C 1.37872 * 119.99851 * 179.97438 * 12 10 9 15 15 N 1.31510 * 120.00621 * 0.02562 * 14 12 10 16 16 Si 1.86810 * 119.99688 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46815 * 60.00361 * 16 14 12 18 18 H 1.48494 * 109.47036 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47076 * 300.00334 * 16 14 12 20 20 C 1.53007 * 109.46885 * 216.00519 * 10 9 6 21 21 C 1.52997 * 109.47361 * 63.37371 * 20 10 9 22 22 C 1.34667 * 108.02180 * 359.62159 * 5 4 3 23 23 N 1.35041 * 125.65009 * 90.00401 * 3 2 1 24 24 C 1.46510 * 126.39761 * 359.97438 * 23 3 2 25 25 C 1.52999 * 109.47060 * 84.97547 * 24 23 3 26 26 C 1.52999 * 117.49575 * 243.62493 * 25 24 23 27 27 C 1.52998 * 117.49983 * 175.00217 * 25 24 23 28 28 H 1.09000 * 109.47029 * 59.99344 * 1 2 3 29 29 H 1.09000 * 109.47071 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47002 * 300.00281 * 1 2 3 31 31 H 1.09000 * 109.46966 * 240.00472 * 2 1 3 32 32 H 1.08990 * 109.47101 * 120.00101 * 2 1 3 33 33 H 0.97008 * 120.00375 * 245.12466 * 9 6 5 34 34 H 0.97002 * 120.00214 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.47226 * 303.37296 * 20 10 9 36 36 H 1.09003 * 109.46765 * 183.37312 * 20 10 9 37 37 H 1.09006 * 109.46763 * 54.84025 * 21 20 10 38 38 H 1.09004 * 109.47164 * 294.84516 * 21 20 10 39 39 H 1.08993 * 109.47590 * 174.83912 * 21 20 10 40 40 H 1.08004 * 126.59592 * 180.19916 * 22 5 4 41 41 H 1.09000 * 109.47159 * 204.97856 * 24 23 3 42 42 H 1.09000 * 109.46681 * 324.97588 * 24 23 3 43 43 H 1.09001 * 115.54925 * 29.32632 * 25 24 23 44 44 H 1.08995 * 117.50552 * 359.97438 * 26 25 24 45 45 H 1.09010 * 117.49699 * 145.02449 * 26 25 24 46 46 H 1.08998 * 117.50026 * 214.97912 * 27 25 24 47 47 H 1.09000 * 117.49533 * 359.97296 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2811 2.1397 -1.0604 5 6 2.7147 3.3511 -0.6818 6 16 3.1791 4.6674 -1.7573 7 8 3.1196 5.8577 -0.9835 8 8 2.4420 4.4834 -2.9582 9 7 4.7726 4.4425 -2.1476 10 6 5.1774 3.2703 -2.9275 11 1 4.4405 2.4773 -2.8006 12 6 5.2679 3.6434 -4.3848 13 1 5.0465 4.6528 -4.6985 14 6 5.6344 2.6963 -5.3174 15 7 5.9045 1.4672 -4.9353 16 14 5.7459 3.1586 -7.1239 17 1 6.7492 4.2396 -7.2971 18 1 6.1563 1.9704 -7.9144 19 1 4.4204 3.6331 -7.5962 20 6 6.5427 2.7805 -2.4407 21 6 6.4310 2.3227 -0.9851 22 6 2.7275 3.3872 0.6643 23 7 2.2947 2.1629 1.0973 24 6 2.1438 1.7373 2.4911 25 6 3.4058 0.9964 2.9376 26 6 3.2620 -0.4789 3.3165 27 6 3.4937 0.5713 4.4047 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.4381 5.0869 -1.8598 34 1 6.1620 0.8008 -5.5915 35 1 7.2665 3.5924 -2.5116 36 1 6.8712 1.9458 -3.0600 37 1 5.6425 1.5750 -0.8989 38 1 6.1917 3.1776 -0.3526 39 1 7.3790 1.8892 -0.6667 40 1 3.0229 4.2215 1.2833 41 1 1.9929 2.6119 3.1238 42 1 1.2833 1.0738 2.5772 43 1 4.3293 1.3024 2.4460 44 1 2.2683 -0.9217 3.2482 45 1 4.0911 -1.1439 3.0743 46 1 4.4751 0.5974 4.8783 47 1 2.6526 0.8200 5.0519 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595328346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:16 Heat of formation + Delta-G solvation = -27.900302 kcal Electronic energy + Delta-G solvation = -29140.209741 eV Core-core repulsion = 25257.531500 eV Total energy + Delta-G solvation = -3882.678241 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.31122 -38.56432 -38.18144 -37.63303 -36.76271 -34.86349 -34.57319 -34.10664 -32.23778 -30.05913 -28.50438 -28.32044 -24.95396 -24.86208 -23.53360 -23.14067 -22.03322 -21.92425 -20.80546 -20.25762 -18.97093 -18.70041 -18.08400 -17.15797 -16.93350 -16.73431 -16.37230 -16.12549 -15.52261 -15.44694 -15.25478 -15.00449 -14.83682 -14.64520 -14.52246 -13.92898 -13.56626 -13.40191 -13.34485 -13.12529 -13.02021 -12.97344 -12.82489 -12.68554 -12.63550 -12.59000 -12.39670 -12.37834 -12.06955 -12.05119 -11.67231 -11.57103 -11.49978 -11.45877 -11.19751 -10.87973 -10.78631 -10.41237 -10.00298 -9.79051 -8.05802 -6.18091 -0.37925 0.60749 1.41929 1.46234 1.52647 1.57576 1.64756 2.41492 2.51016 2.80088 2.93403 3.20525 3.23748 3.48115 3.64867 3.77080 3.86425 3.99598 4.09272 4.15077 4.27496 4.31674 4.36788 4.48071 4.53161 4.57658 4.58542 4.70981 4.79989 4.89076 4.94188 4.96966 5.02084 5.09619 5.13133 5.16421 5.23561 5.25855 5.31614 5.34826 5.41381 5.69760 5.82645 6.05587 6.08834 6.32752 6.52150 6.85540 6.87594 7.49102 8.96858 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012825 B = 0.003854 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.764722 B = 7264.261493 C = 7568.084917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.040 4.040 3 C 0.211 3.789 4 N -0.459 5.459 5 C -0.578 4.578 6 S 2.732 3.268 7 O -0.988 6.988 8 O -0.995 6.995 9 N -1.096 6.096 10 C 0.290 3.710 11 H 0.022 0.978 12 C -0.543 4.543 13 H 0.049 0.951 14 C 0.020 3.980 15 N -0.911 5.911 16 Si 0.948 3.052 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.284 1.284 20 C -0.119 4.119 21 C -0.130 4.130 22 C 0.078 3.922 23 N -0.436 5.436 24 C 0.125 3.875 25 C -0.194 4.194 26 C -0.176 4.176 27 C -0.150 4.150 28 H 0.037 0.963 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.415 0.585 34 H 0.263 0.737 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.026 0.974 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.223 0.777 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.089 0.911 44 H 0.115 0.885 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.113 -5.298 23.675 25.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.079 4.079 3 C -0.056 4.056 4 N -0.176 5.176 5 C -0.791 4.791 6 S 2.821 3.179 7 O -0.978 6.978 8 O -0.984 6.984 9 N -0.857 5.857 10 C 0.185 3.815 11 H 0.040 0.960 12 C -0.582 4.582 13 H 0.067 0.933 14 C -0.180 4.180 15 N -0.551 5.551 16 Si 0.774 3.226 17 H -0.190 1.190 18 H -0.202 1.202 19 H -0.210 1.210 20 C -0.159 4.159 21 C -0.187 4.187 22 C -0.065 4.065 23 N -0.115 5.115 24 C 0.005 3.995 25 C -0.213 4.213 26 C -0.213 4.213 27 C -0.187 4.187 28 H 0.057 0.943 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.130 0.870 33 H 0.250 0.750 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.239 0.761 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.107 0.893 44 H 0.133 0.867 45 H 0.110 0.890 46 H 0.118 0.882 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.856 -5.250 22.576 24.171 hybrid contribution 0.738 0.246 -0.336 0.848 sum -6.118 -5.004 22.241 23.603 Atomic orbital electron populations 1.21729 0.92537 1.03741 1.01935 1.20199 0.97420 0.85077 1.05190 1.24189 1.02658 0.97756 0.80965 1.70301 1.15378 1.01926 1.30020 1.32991 1.23990 1.13985 1.08099 1.00324 0.72776 0.72153 0.72648 1.93490 1.87227 1.44267 1.72836 1.93514 1.71917 1.86529 1.46487 1.55250 1.25848 1.36237 1.68377 1.18232 0.93682 0.81553 0.88028 0.96027 1.21837 1.45905 0.96823 0.93648 0.93275 1.25555 0.94957 0.94934 1.02534 1.69952 1.47195 1.02846 1.35058 0.85776 0.78282 0.78018 0.80568 1.19046 1.20192 1.20975 1.21686 0.97473 1.01260 0.95456 1.21636 1.00155 1.00060 0.96859 1.23026 0.98876 0.90702 0.93884 1.45870 1.46635 1.10163 1.08869 1.21987 0.98522 1.02399 0.76615 1.22517 0.98367 0.99294 1.01092 1.23222 1.04270 0.90725 1.03062 1.23058 1.04526 1.01498 0.89661 0.94347 0.88944 0.91505 0.89951 0.86982 0.74977 0.92764 0.93411 0.90642 0.95447 0.92528 0.92575 0.76081 0.85775 0.86180 0.89285 0.86676 0.89033 0.88210 0.86392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.89 71.98 0.71 -1.77 16 2 C -0.04 -0.86 6.09 29.85 0.18 -0.68 16 3 C 0.21 6.31 7.16 138.13 0.99 7.30 16 4 N -0.46 -18.89 11.25 -185.63 -2.09 -20.98 16 5 C -0.58 -22.26 6.99 83.52 0.58 -21.68 16 6 S 2.73 119.91 5.81 -56.49 -0.33 119.59 16 7 O -0.99 -40.90 17.81 -128.00 -2.28 -43.18 16 8 O -0.99 -54.41 17.77 -128.00 -2.28 -56.69 16 9 N -1.10 -47.82 4.92 -172.51 -0.85 -48.67 16 10 C 0.29 15.02 2.17 44.25 0.10 15.12 16 11 H 0.02 1.28 7.86 -2.39 -0.02 1.26 16 12 C -0.54 -31.75 8.84 25.60 0.23 -31.52 16 13 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 14 C 0.02 1.14 5.30 84.65 0.45 1.59 16 15 N -0.91 -53.40 11.30 21.44 0.24 -53.16 16 16 Si 0.95 46.28 29.54 68.60 2.03 48.31 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 20 C -0.12 -5.51 5.37 30.60 0.16 -5.34 16 21 C -0.13 -4.86 9.72 71.98 0.70 -4.16 16 22 C 0.08 2.19 11.27 83.09 0.94 3.12 16 23 N -0.44 -10.10 2.75 -514.26 -1.41 -11.51 16 24 C 0.12 1.49 5.96 86.38 0.51 2.01 16 25 C -0.19 -2.39 6.01 -10.80 -0.06 -2.46 16 26 C -0.18 -1.66 9.68 30.59 0.30 -1.37 16 27 C -0.15 -1.14 10.25 30.59 0.31 -0.82 16 28 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.11 1.62 7.32 -2.39 -0.02 1.60 16 33 H 0.42 15.42 8.85 -96.74 -0.86 14.57 16 34 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 35 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.08 3.97 5.99 -2.39 -0.01 3.96 16 37 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.06 1.85 7.85 -2.39 -0.02 1.83 16 39 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.22 4.45 8.06 -2.91 -0.02 4.42 16 41 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.12 0.90 7.65 -2.39 -0.02 0.89 16 43 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.12 0.70 8.03 -2.39 -0.02 0.68 16 45 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 46 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -82.93 402.61 -0.76 -83.69 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.11 Total: 23.26 kcal Atomic # 6 Polarization: -46.76 SS G_CDS: 6.10 Total: -40.66 kcal Atomic # 7 Polarization: -130.21 SS G_CDS: -4.11 Total: -134.32 kcal Atomic # 8 Polarization: -95.31 SS G_CDS: -4.55 Total: -99.86 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Atomic # 16 Polarization: 119.91 SS G_CDS: -0.33 Total: 119.59 kcal Total: -82.93 -0.76 -83.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595328346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.793 kcal (2) G-P(sol) polarization free energy of solvation -82.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds