Wall clock time and date at job start Sat Apr 11 2020 06:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47240 * 2 1 4 4 N 1.46495 * 109.47246 * 120.00278 * 2 1 3 5 5 C 1.46506 * 119.99753 * 299.99596 * 4 2 1 6 6 C 1.50703 * 109.47289 * 275.00143 * 5 4 2 7 7 H 1.07994 * 119.99399 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99789 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00144 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99733 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46632 * 90.00476 * 10 8 6 12 12 H 1.48496 * 109.46690 * 210.00029 * 10 8 6 13 13 H 1.48498 * 109.47171 * 330.00226 * 10 8 6 14 14 S 1.65602 * 120.00241 * 120.00245 * 4 2 1 15 15 O 1.42097 * 106.40599 * 23.53509 * 14 4 2 16 16 O 1.42097 * 106.40158 * 156.46000 * 14 4 2 17 17 C 1.76208 * 107.21383 * 269.99567 * 14 4 2 18 18 C 1.39868 * 126.03878 * 90.02539 * 17 14 4 19 19 N 1.30835 * 108.20295 * 179.97438 * 18 17 14 20 20 N 1.40078 * 108.20487 * 0.02562 * 19 18 17 21 21 C 1.46504 * 126.03801 * 180.02562 * 20 19 18 22 22 C 1.54262 * 110.03231 * 212.19059 * 21 20 19 23 23 C 1.54890 * 104.19354 * 217.10060 * 22 21 20 24 24 C 1.54886 * 102.74726 * 37.94654 * 23 22 21 25 25 C 1.53866 * 110.03251 * 95.02254 * 21 20 19 26 26 C 1.34943 * 107.92736 * 359.75690 * 20 19 18 27 27 H 1.08995 * 109.46619 * 299.99901 * 1 2 3 28 28 H 1.09004 * 109.46909 * 60.00245 * 1 2 3 29 29 H 1.08996 * 109.46802 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47050 * 239.99951 * 2 1 3 31 31 H 1.08997 * 109.47289 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46970 * 299.99718 * 3 2 1 33 33 H 1.08996 * 109.47191 * 59.99925 * 3 2 1 34 34 H 1.09001 * 109.47060 * 35.00593 * 5 4 2 35 35 H 1.09004 * 109.47073 * 155.00082 * 5 4 2 36 36 H 0.96997 * 119.99752 * 179.97438 * 9 8 6 37 37 H 1.08006 * 125.89793 * 359.95924 * 18 17 14 38 38 H 1.09004 * 110.01491 * 333.63145 * 21 20 19 39 39 H 1.08998 * 110.48891 * 335.78571 * 22 21 20 40 40 H 1.09001 * 110.48421 * 98.42752 * 22 21 20 41 41 H 1.08997 * 110.75834 * 279.62677 * 23 22 21 42 42 H 1.09007 * 110.75363 * 156.25609 * 23 22 21 43 43 H 1.08999 * 110.48639 * 203.37035 * 24 23 22 44 44 H 1.09005 * 110.59808 * 80.78824 * 24 23 22 45 45 H 1.09007 * 110.03771 * 238.57111 * 25 21 20 46 46 H 1.08998 * 110.03723 * 0.02562 * 25 21 20 47 47 H 1.08003 * 126.13303 * 180.23804 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1901 2.5267 6 6 2.6339 0.8906 2.9311 7 1 3.4333 1.1762 2.2636 8 6 2.4995 1.5152 4.1529 9 7 1.5257 1.1676 4.9656 10 14 3.7016 2.8542 4.6545 11 1 3.1898 4.1732 4.2032 12 1 3.8483 2.8594 6.1322 13 1 5.0221 2.5944 4.0268 14 16 2.9705 -2.0370 1.0441 15 8 3.5795 -1.9554 -0.2371 16 8 3.7119 -2.1425 2.2518 17 6 1.8961 -3.4328 0.9963 18 6 1.3348 -4.0003 -0.1522 19 7 0.5969 -5.0171 0.2130 20 7 0.6650 -5.1286 1.6077 21 6 -0.0149 -6.1358 2.4260 22 6 -0.3834 -5.5392 3.8001 23 6 -0.1628 -6.7075 4.7928 24 6 1.1035 -7.3996 4.2302 25 6 0.9305 -7.3185 2.6995 26 6 1.4723 -4.1482 2.0638 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 0.6540 0.2180 2.5045 35 1 1.7105 -1.0074 3.2465 36 1 1.4314 1.6069 5.8253 37 1 1.4844 -3.6580 -1.1656 38 1 -0.9131 -6.4856 1.9170 39 1 0.2737 -4.7038 4.0419 40 1 -1.4259 -5.2213 3.8107 41 1 -1.0129 -7.3896 4.7818 42 1 0.0181 -6.3302 5.7993 43 1 1.1463 -8.4392 4.5549 44 1 2.0021 -6.8666 4.5413 45 1 0.4908 -8.2427 2.3240 46 1 1.8953 -7.1431 2.2238 47 1 1.7318 -3.9658 3.0962 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601337069.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:30 Heat of formation + Delta-G solvation = -7.098103 kcal Electronic energy + Delta-G solvation = -29226.091518 eV Core-core repulsion = 25344.315328 eV Total energy + Delta-G solvation = -3881.776190 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.37703 -38.20704 -36.83404 -36.40732 -35.02089 -32.72643 -32.35910 -30.55831 -30.36792 -29.12718 -27.71315 -26.89869 -26.45608 -22.82487 -22.64662 -21.77152 -20.87208 -20.18312 -19.82775 -18.43555 -17.54752 -16.86695 -16.41927 -16.26492 -15.74191 -15.14737 -14.75187 -14.66419 -14.39993 -14.21500 -13.81748 -13.66790 -13.47693 -13.03712 -12.91550 -12.30784 -12.26461 -12.08210 -12.00314 -11.62988 -11.57974 -11.54119 -11.47746 -11.42930 -11.32407 -11.08342 -11.05672 -10.98446 -10.95246 -10.84522 -10.73870 -10.42082 -10.35320 -10.21555 -9.78331 -9.52873 -9.49683 -9.04400 -8.39428 -7.97562 -6.02462 -4.03797 1.19424 1.70172 2.34474 2.46054 3.33819 3.40558 3.46721 3.89099 3.98333 4.14012 4.46344 4.47247 4.57215 4.58060 4.76696 4.89816 4.98493 5.02021 5.07929 5.17753 5.22904 5.32316 5.42635 5.43885 5.54012 5.59681 5.69028 5.71131 5.73878 5.75301 5.81646 5.86027 5.94518 6.08700 6.24444 6.34834 6.47910 6.55770 6.62345 6.85180 6.87229 7.20253 7.32690 7.49825 7.51893 7.72558 7.96496 8.26901 8.98247 9.59905 11.06239 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011787 B = 0.004185 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.027764 B = 6689.012271 C = 7929.340511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.151 3.849 3 C -0.153 4.153 4 N -0.979 5.979 5 C 0.257 3.743 6 C -0.518 4.518 7 H 0.064 0.936 8 C 0.061 3.939 9 N -0.899 5.899 10 Si 0.892 3.108 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.272 1.272 14 S 2.713 3.287 15 O -0.980 6.980 16 O -0.951 6.951 17 C -0.810 4.810 18 C 0.129 3.871 19 N -0.301 5.301 20 N -0.357 5.357 21 C 0.151 3.849 22 C -0.142 4.142 23 C -0.121 4.121 24 C -0.127 4.127 25 C -0.137 4.137 26 C 0.179 3.821 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.034 0.966 36 H 0.262 0.738 37 H 0.193 0.807 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.046 -14.171 -4.403 16.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.044 3.956 3 C -0.212 4.212 4 N -0.819 5.819 5 C 0.135 3.865 6 C -0.557 4.557 7 H 0.082 0.918 8 C -0.140 4.140 9 N -0.538 5.538 10 Si 0.720 3.280 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.197 1.197 14 S 2.800 3.200 15 O -0.970 6.970 16 O -0.941 6.941 17 C -0.906 4.906 18 C -0.060 4.060 19 N -0.119 5.119 20 N -0.135 5.135 21 C 0.049 3.951 22 C -0.180 4.180 23 C -0.159 4.159 24 C -0.165 4.165 25 C -0.176 4.176 26 C 0.027 3.973 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.210 0.790 38 H 0.125 0.875 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.094 0.906 47 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -6.122 -15.295 -4.593 17.103 hybrid contribution 0.391 1.043 0.679 1.305 sum -5.731 -14.252 -3.914 15.852 Atomic orbital electron populations 1.22155 0.96112 1.01412 1.02217 1.20633 0.93635 0.94570 0.86753 1.22135 1.01424 0.95569 1.02088 1.57540 1.70156 1.40495 1.13683 1.19011 0.96954 0.94967 0.75527 1.21545 1.13313 1.18956 1.01900 0.91824 1.24898 0.95593 0.97321 0.96200 1.69917 1.31522 1.42520 1.09874 0.86585 0.81841 0.81899 0.77683 1.20731 1.21263 1.19682 1.01274 0.73433 0.72188 0.73081 1.93476 1.73996 1.86936 1.42590 1.93573 1.67727 1.86419 1.46404 1.32161 1.31554 1.28593 0.98302 1.23457 0.92249 0.91652 0.98640 1.77317 1.23967 1.21454 0.89161 1.49348 1.35482 1.23502 1.05210 1.22166 0.95622 0.86725 0.90600 1.22906 1.03425 0.99493 0.92186 1.22470 0.97995 0.96475 0.98918 1.22412 0.98709 1.01351 0.94009 1.22632 1.00074 0.97449 0.97436 1.22366 0.88378 0.86773 0.99823 0.91348 0.92548 0.93263 0.90008 0.92694 0.93570 0.89817 0.94424 0.94768 0.92886 0.78978 0.87466 0.89631 0.89801 0.90861 0.90262 0.90904 0.90858 0.90200 0.90647 0.79425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.16 37.16 0.34 -2.10 16 2 C 0.15 2.63 3.24 -67.93 -0.22 2.41 16 3 C -0.15 -2.72 8.20 37.16 0.30 -2.42 16 4 N -0.98 -19.80 2.73 -108.56 -0.30 -20.10 16 5 C 0.26 6.12 4.67 -5.19 -0.02 6.09 16 6 C -0.52 -13.78 7.53 -34.44 -0.26 -14.04 16 7 H 0.06 1.70 7.07 -52.49 -0.37 1.33 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.90 -25.32 13.29 55.43 0.74 -24.59 16 10 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 14 S 2.71 54.04 5.78 -107.50 -0.62 53.41 16 15 O -0.98 -20.29 16.43 -57.17 -0.94 -21.23 16 16 O -0.95 -22.13 16.81 -57.17 -0.96 -23.09 16 17 C -0.81 -13.61 6.17 -40.01 -0.25 -13.86 16 18 C 0.13 1.98 11.81 -17.37 -0.21 1.78 16 19 N -0.30 -4.59 12.58 30.63 0.39 -4.21 16 20 N -0.36 -4.93 3.45 -53.78 -0.19 -5.12 16 21 C 0.15 1.53 4.01 -66.82 -0.27 1.27 16 22 C -0.14 -1.28 6.37 -25.07 -0.16 -1.44 16 23 C -0.12 -0.86 6.91 -24.74 -0.17 -1.03 16 24 C -0.13 -0.96 6.83 -25.07 -0.17 -1.13 16 25 C -0.14 -1.21 6.59 -25.62 -0.17 -1.38 16 26 C 0.18 2.74 10.17 -17.23 -0.18 2.56 16 27 H 0.07 1.15 6.69 -51.93 -0.35 0.80 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.32 6.91 -51.93 -0.36 0.96 16 31 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.67 6.65 -51.93 -0.35 1.32 16 34 H 0.04 0.91 6.45 -51.93 -0.33 0.58 16 35 H 0.03 0.86 7.61 -51.93 -0.40 0.47 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.19 2.45 8.06 -52.48 -0.42 2.03 16 38 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.09 0.88 5.95 -51.93 -0.31 0.58 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.80 7.92 -51.93 -0.41 0.39 16 47 H 0.19 2.62 6.90 -52.48 -0.36 2.26 16 LS Contribution 386.92 15.07 5.83 5.83 Total: -1.00 -32.95 386.92 -10.03 -42.98 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -7.43 Total: 1.48 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -1.52 Total: -21.71 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: 0.64 Total: -54.01 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -1.90 Total: -44.32 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 54.04 SS G_CDS: -0.62 Total: 53.41 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.95 -10.03 -42.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601337069.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.879 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds