Wall clock time and date at job start Sat Apr 11 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47248 * 2 1 4 4 C 1.52996 * 109.47248 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47173 * 180.02562 * 4 3 2 6 6 C 1.34953 * 126.03806 * 125.26304 * 5 4 3 7 7 C 1.35318 * 107.74514 * 180.14606 * 6 5 4 8 8 S 1.76196 * 126.03847 * 179.87088 * 7 6 5 9 9 O 1.42100 * 106.40188 * 356.67360 * 8 7 6 10 10 O 1.42105 * 106.40300 * 223.75779 * 8 7 6 11 11 N 1.65596 * 107.21631 * 110.21668 * 8 7 6 12 12 C 1.46493 * 120.00213 * 65.77160 * 11 8 7 13 13 C 1.53005 * 109.47402 * 157.26191 * 12 11 8 14 14 C 1.50697 * 115.54902 * 304.12036 * 13 12 11 15 15 H 1.07999 * 120.00321 * 92.58430 * 14 13 12 16 16 C 1.37877 * 120.00007 * 272.58225 * 14 13 12 17 17 N 1.31513 * 120.00237 * 183.35167 * 16 14 13 18 18 Si 1.86802 * 119.99869 * 3.35581 * 16 14 13 19 19 H 1.48495 * 109.47076 * 265.04716 * 18 16 14 20 20 H 1.48504 * 109.47123 * 25.04547 * 18 16 14 21 21 H 1.48500 * 109.47418 * 145.04393 * 18 16 14 22 22 C 1.52999 * 117.49716 * 89.78377 * 13 12 11 23 23 C 1.52994 * 117.49854 * 158.44720 * 13 12 11 24 24 C 1.39866 * 107.91967 * 359.61020 * 7 6 5 25 25 C 1.50697 * 125.89905 * 180.26237 * 24 7 6 26 26 N 1.30839 * 108.20280 * 0.24375 * 24 7 6 27 27 H 1.08999 * 109.47256 * 59.99616 * 1 2 3 28 28 H 1.08999 * 109.47435 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46980 * 299.99655 * 1 2 3 30 30 H 1.09002 * 109.46980 * 240.00345 * 2 1 3 31 31 H 1.08999 * 109.47256 * 120.00384 * 2 1 3 32 32 H 1.09000 * 109.46405 * 59.99985 * 3 2 1 33 33 H 1.08999 * 109.47306 * 300.00353 * 3 2 1 34 34 H 1.09000 * 109.47201 * 59.99865 * 4 3 2 35 35 H 1.09009 * 109.47237 * 300.00426 * 4 3 2 36 36 H 1.08001 * 126.12552 * 359.97438 * 6 5 4 37 37 H 0.97006 * 119.99871 * 245.76633 * 11 8 7 38 38 H 1.08998 * 109.47138 * 37.26432 * 12 11 8 39 39 H 1.09002 * 109.47264 * 277.26322 * 12 11 8 40 40 H 0.97000 * 119.99677 * 179.97438 * 17 16 14 41 41 H 1.08993 * 117.49945 * 215.00506 * 22 13 12 42 42 H 1.08998 * 117.49927 * 0.02869 * 22 13 12 43 43 H 1.09000 * 117.50096 * 359.97438 * 23 13 12 44 44 H 1.09001 * 117.49881 * 144.97747 * 23 13 12 45 45 H 1.08999 * 109.47145 * 96.04801 * 25 24 7 46 46 H 1.09005 * 109.47139 * 216.05220 * 25 24 7 47 47 H 1.09000 * 109.47096 * 336.05118 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.9173 3.3617 0.8910 7 6 5.1117 4.6559 0.5468 8 16 6.1449 5.8085 1.3885 9 8 6.6580 5.1304 2.5271 10 8 5.4083 7.0208 1.4726 11 7 7.4404 6.1156 0.4039 12 6 7.2416 6.7999 -0.8761 13 6 8.5529 7.4563 -1.3126 14 6 9.1624 8.4132 -0.3208 15 1 9.8928 8.0598 0.3920 16 6 8.7877 9.7401 -0.3232 17 7 9.3671 10.5886 0.4977 18 14 7.4568 10.3326 -1.4925 19 1 8.0852 10.8737 -2.7243 20 1 6.5686 9.1967 -1.8479 21 1 6.6585 11.3981 -0.8349 22 6 9.5084 6.6239 -2.1700 23 6 8.7219 7.7768 -2.7990 24 6 4.3523 4.9153 -0.5988 25 6 4.2755 6.2314 -1.3287 26 7 3.7204 3.8177 -0.9274 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.9329 0.9288 -0.8908 35 1 3.9337 0.9285 0.8891 36 1 5.3667 2.8516 1.7301 37 1 8.3310 5.8425 0.6747 38 1 6.4725 7.5641 -0.7640 39 1 6.9286 6.0772 -1.6297 40 1 9.1036 11.5222 0.4956 41 1 10.5778 6.7685 -2.0167 42 1 9.2027 5.6089 -2.4234 43 1 7.8992 7.5196 -3.4661 44 1 9.2737 8.6800 -3.0596 45 1 4.9775 6.2259 -2.1626 46 1 3.2637 6.3789 -1.7065 47 1 4.5298 7.0414 -0.6451 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601408798.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:32 Heat of formation + Delta-G solvation = 13.134321 kcal Electronic energy + Delta-G solvation = -28402.688943 eV Core-core repulsion = 24521.790097 eV Total energy + Delta-G solvation = -3880.898846 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.45298 -37.45203 -36.70894 -36.48940 -35.33188 -33.75775 -33.27682 -32.03014 -30.90016 -29.93583 -27.57515 -26.21916 -24.83826 -24.04571 -21.90883 -21.70152 -21.63766 -20.29524 -19.22738 -18.74870 -17.71722 -16.92549 -16.49347 -16.24090 -15.73730 -15.53570 -15.18671 -14.79958 -14.50007 -14.31297 -14.08844 -13.86656 -13.47255 -13.35083 -13.15086 -12.78750 -12.67389 -12.55551 -12.49221 -12.23542 -11.99894 -11.82292 -11.66112 -11.59876 -11.54254 -11.39242 -11.37598 -11.10146 -11.04460 -10.69871 -10.47766 -10.44114 -10.12807 -9.59613 -9.48481 -9.27812 -9.13245 -8.71018 -8.52162 -8.46442 -6.05887 -4.09334 0.91820 1.48165 2.17940 2.24253 3.34876 3.45031 3.46653 3.66860 3.93773 4.24290 4.29593 4.40918 4.47836 4.51076 4.56473 4.68842 4.82401 4.86596 4.92474 4.98678 5.13782 5.20506 5.26983 5.28004 5.40867 5.50034 5.61042 5.63479 5.67217 5.71392 5.80033 5.85392 5.91294 6.00699 6.03759 6.09112 6.15034 6.43223 6.45303 6.66027 6.70203 6.73811 7.10089 7.13889 7.38901 7.68371 7.77906 8.52135 8.95883 9.57027 11.05898 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019281 B = 0.003057 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.852817 B = 9155.952849 C = 9429.632590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.133 4.133 4 C 0.127 3.873 5 N -0.363 5.363 6 C 0.174 3.826 7 C -0.811 4.811 8 S 2.723 3.277 9 O -0.977 6.977 10 O -0.955 6.955 11 N -1.089 6.089 12 C 0.149 3.851 13 C -0.006 4.006 14 C -0.485 4.485 15 H 0.079 0.921 16 C 0.079 3.921 17 N -0.895 5.895 18 Si 0.877 3.123 19 H -0.281 1.281 20 H -0.254 1.254 21 H -0.291 1.291 22 C -0.180 4.180 23 C -0.196 4.196 24 C 0.164 3.836 25 C -0.111 4.111 26 N -0.295 5.295 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.192 0.808 37 H 0.420 0.580 38 H 0.078 0.922 39 H 0.040 0.960 40 H 0.265 0.735 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.516 -20.349 -2.961 24.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.172 4.172 4 C 0.006 3.994 5 N -0.140 5.140 6 C 0.021 3.979 7 C -0.908 4.908 8 S 2.809 3.191 9 O -0.968 6.968 10 O -0.945 6.945 11 N -0.850 5.850 12 C 0.023 3.977 13 C -0.008 4.008 14 C -0.522 4.522 15 H 0.097 0.903 16 C -0.124 4.124 17 N -0.532 5.532 18 Si 0.705 3.295 19 H -0.208 1.208 20 H -0.178 1.178 21 H -0.218 1.218 22 C -0.217 4.217 23 C -0.234 4.234 24 C -0.005 4.005 25 C -0.169 4.169 26 N -0.116 5.116 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.209 0.791 37 H 0.255 0.745 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.102 0.898 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.769 -20.499 -2.984 25.441 hybrid contribution 0.095 0.109 -0.482 0.503 sum -14.675 -20.390 -3.466 25.360 Atomic orbital electron populations 1.21749 0.95224 1.01848 1.02172 1.21461 0.96600 0.95509 1.02379 1.21920 0.93044 0.98048 1.04146 1.21937 0.96084 0.77096 1.04318 1.49122 1.33993 1.10377 1.20524 1.22465 0.89754 0.92168 0.93480 1.31799 1.28723 1.12821 1.17407 1.00914 0.72691 0.73285 0.72243 1.93515 1.79587 1.76349 1.47306 1.93561 1.72569 1.42894 1.85481 1.54960 1.22613 1.72867 1.34563 1.21286 0.99722 0.93971 0.82722 1.19554 0.92780 0.98423 0.90074 1.20156 1.24353 0.91367 1.16363 0.90335 1.24974 0.95642 0.96585 0.95235 1.69884 1.41798 1.03840 1.37669 0.86892 0.82801 0.79051 0.80805 1.20750 1.17844 1.21786 1.22857 0.98320 0.93795 1.06738 1.22968 1.02773 1.00050 0.97614 1.21874 0.91609 0.95117 0.91947 1.20874 1.04442 0.90507 1.01085 1.77309 1.24414 0.96569 1.13337 0.92514 0.92455 0.92598 0.91554 0.91642 0.91179 0.90155 0.89240 0.88197 0.79139 0.74468 0.90412 0.94220 0.92537 0.89466 0.90990 0.90837 0.89204 0.89056 0.89763 0.87944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.12 -0.62 5.93 -26.73 -0.16 -0.78 16 3 C -0.13 -0.95 5.40 -26.73 -0.14 -1.09 16 4 C 0.13 0.92 6.51 -4.05 -0.03 0.90 16 5 N -0.36 -4.25 3.68 -61.36 -0.23 -4.48 16 6 C 0.17 2.14 11.08 -17.22 -0.19 1.95 16 7 C -0.81 -12.22 6.13 -40.01 -0.25 -12.46 16 8 S 2.72 48.31 5.64 -107.50 -0.61 47.70 16 9 O -0.98 -18.33 17.74 -57.17 -1.01 -19.35 16 10 O -0.96 -20.04 15.69 -57.17 -0.90 -20.94 16 11 N -1.09 -19.71 5.67 -10.61 -0.06 -19.77 16 12 C 0.15 2.85 4.50 -4.04 -0.02 2.83 16 13 C -0.01 -0.13 0.92 -155.66 -0.14 -0.27 16 14 C -0.49 -12.87 9.12 -34.44 -0.31 -13.18 16 15 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 16 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 17 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 18 Si 0.88 21.31 25.05 -169.99 -4.26 17.05 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.25 -5.59 5.42 56.52 0.31 -5.28 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 C -0.18 -3.36 9.93 -26.69 -0.27 -3.62 16 23 C -0.20 -3.86 7.63 -26.69 -0.20 -4.06 16 24 C 0.16 2.48 7.22 -82.41 -0.59 1.89 16 25 C -0.11 -1.57 8.68 36.00 0.31 -1.25 16 26 N -0.30 -4.24 12.42 33.67 0.42 -3.82 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.10 0.46 8.07 -51.92 -0.42 0.04 16 36 H 0.19 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.42 7.24 8.71 -34.47 -0.30 6.94 16 38 H 0.08 1.58 4.33 -51.93 -0.23 1.35 16 39 H 0.04 0.64 6.83 -51.93 -0.35 0.29 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.09 1.89 7.33 -51.93 -0.38 1.51 16 45 H 0.09 1.18 6.85 -51.93 -0.36 0.82 16 46 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.10 1.62 5.09 -51.93 -0.26 1.35 16 LS Contribution 387.26 15.07 5.84 5.84 Total: -1.00 -34.71 387.26 -9.20 -43.92 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -7.45 Total: 7.56 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: -1.72 Total: -27.49 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.91 Total: -54.29 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -1.91 Total: -40.29 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.26 Total: 17.05 kcal Atomic # 16 Polarization: 48.31 SS G_CDS: -0.61 Total: 47.70 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.71 -9.20 -43.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601408798.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.053 kcal (2) G-P(sol) polarization free energy of solvation -34.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds