Wall clock time and date at job start Sat Apr 11 2020 06:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47248 * 2 1 4 4 C 1.52996 * 109.47248 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47173 * 180.02562 * 4 3 2 6 6 C 1.34953 * 126.03806 * 125.26304 * 5 4 3 7 7 C 1.35318 * 107.74514 * 180.14606 * 6 5 4 8 8 S 1.76196 * 126.03847 * 179.87088 * 7 6 5 9 9 O 1.42100 * 106.40188 * 356.67360 * 8 7 6 10 10 O 1.42105 * 106.40300 * 223.75779 * 8 7 6 11 11 N 1.65596 * 107.21631 * 110.21668 * 8 7 6 12 12 C 1.46493 * 120.00213 * 65.77160 * 11 8 7 13 13 C 1.53005 * 109.47402 * 157.26191 * 12 11 8 14 14 C 1.50697 * 115.54902 * 304.12036 * 13 12 11 15 15 H 1.07999 * 120.00321 * 92.58430 * 14 13 12 16 16 C 1.37877 * 120.00007 * 272.58225 * 14 13 12 17 17 N 1.31513 * 120.00237 * 183.35167 * 16 14 13 18 18 Si 1.86802 * 119.99869 * 3.35581 * 16 14 13 19 19 H 1.48495 * 109.47076 * 265.04716 * 18 16 14 20 20 H 1.48504 * 109.47123 * 25.04547 * 18 16 14 21 21 H 1.48500 * 109.47418 * 145.04393 * 18 16 14 22 22 C 1.52999 * 117.49716 * 89.78377 * 13 12 11 23 23 C 1.52994 * 117.49854 * 158.44720 * 13 12 11 24 24 C 1.39866 * 107.91967 * 359.61020 * 7 6 5 25 25 C 1.50697 * 125.89905 * 180.26237 * 24 7 6 26 26 N 1.30839 * 108.20280 * 0.24375 * 24 7 6 27 27 H 1.08999 * 109.47256 * 59.99616 * 1 2 3 28 28 H 1.08999 * 109.47435 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46980 * 299.99655 * 1 2 3 30 30 H 1.09002 * 109.46980 * 240.00345 * 2 1 3 31 31 H 1.08999 * 109.47256 * 120.00384 * 2 1 3 32 32 H 1.09000 * 109.46405 * 59.99985 * 3 2 1 33 33 H 1.08999 * 109.47306 * 300.00353 * 3 2 1 34 34 H 1.09000 * 109.47201 * 59.99865 * 4 3 2 35 35 H 1.09009 * 109.47237 * 300.00426 * 4 3 2 36 36 H 1.08001 * 126.12552 * 359.97438 * 6 5 4 37 37 H 0.97006 * 119.99871 * 245.76633 * 11 8 7 38 38 H 1.08998 * 109.47138 * 37.26432 * 12 11 8 39 39 H 1.09002 * 109.47264 * 277.26322 * 12 11 8 40 40 H 0.97000 * 119.99677 * 179.97438 * 17 16 14 41 41 H 1.08993 * 117.49945 * 215.00506 * 22 13 12 42 42 H 1.08998 * 117.49927 * 0.02869 * 22 13 12 43 43 H 1.09000 * 117.50096 * 359.97438 * 23 13 12 44 44 H 1.09001 * 117.49881 * 144.97747 * 23 13 12 45 45 H 1.08999 * 109.47145 * 96.04801 * 25 24 7 46 46 H 1.09005 * 109.47139 * 216.05220 * 25 24 7 47 47 H 1.09000 * 109.47096 * 336.05118 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.9173 3.3617 0.8910 7 6 5.1117 4.6559 0.5468 8 16 6.1449 5.8085 1.3885 9 8 6.6580 5.1304 2.5271 10 8 5.4083 7.0208 1.4726 11 7 7.4404 6.1156 0.4039 12 6 7.2416 6.7999 -0.8761 13 6 8.5529 7.4563 -1.3126 14 6 9.1624 8.4132 -0.3208 15 1 9.8928 8.0598 0.3920 16 6 8.7877 9.7401 -0.3232 17 7 9.3671 10.5886 0.4977 18 14 7.4568 10.3326 -1.4925 19 1 8.0852 10.8737 -2.7243 20 1 6.5686 9.1967 -1.8479 21 1 6.6585 11.3981 -0.8349 22 6 9.5084 6.6239 -2.1700 23 6 8.7219 7.7768 -2.7990 24 6 4.3523 4.9153 -0.5988 25 6 4.2755 6.2314 -1.3287 26 7 3.7204 3.8177 -0.9274 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.9329 0.9288 -0.8908 35 1 3.9337 0.9285 0.8891 36 1 5.3667 2.8516 1.7301 37 1 8.3310 5.8425 0.6747 38 1 6.4725 7.5641 -0.7640 39 1 6.9286 6.0772 -1.6297 40 1 9.1036 11.5222 0.4956 41 1 10.5778 6.7685 -2.0167 42 1 9.2027 5.6089 -2.4234 43 1 7.8992 7.5196 -3.4661 44 1 9.2737 8.6800 -3.0596 45 1 4.9775 6.2259 -2.1626 46 1 3.2637 6.3789 -1.7065 47 1 4.5298 7.0414 -0.6451 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601408798.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:31 Heat of formation + Delta-G solvation = -12.509414 kcal Electronic energy + Delta-G solvation = -28403.800939 eV Core-core repulsion = 24521.790097 eV Total energy + Delta-G solvation = -3882.010842 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.43500 -39.04611 -38.16819 -37.08972 -36.81417 -34.98108 -34.33303 -34.10489 -31.79398 -30.82735 -28.42004 -28.02160 -26.54974 -24.74592 -23.22547 -22.82661 -22.18518 -21.31907 -20.96570 -20.07259 -18.82706 -18.55703 -18.01798 -17.13744 -16.89068 -16.70566 -16.54905 -16.04866 -15.83321 -15.34670 -15.04178 -14.99019 -14.72778 -14.60342 -14.33716 -14.16871 -13.95261 -13.64557 -13.41063 -13.36452 -13.15237 -13.10329 -12.93008 -12.89791 -12.80216 -12.51807 -12.40478 -12.18830 -12.06036 -12.02760 -11.87265 -11.63486 -11.51519 -11.47411 -10.91673 -10.54406 -10.49049 -10.36408 -10.19567 -9.99232 -8.21001 -6.26452 -0.43426 0.51164 1.13078 1.36435 1.40462 1.47082 1.55690 2.32122 2.45565 2.84347 3.15435 3.20442 3.31201 3.49335 3.69085 3.80444 3.83884 4.05186 4.11589 4.14093 4.29972 4.36432 4.37462 4.43291 4.49591 4.54936 4.56004 4.57291 4.68776 4.72573 4.85417 4.86925 4.92679 4.97660 4.97832 5.18735 5.19540 5.21173 5.27115 5.38803 5.40850 5.56234 5.60011 5.79421 5.82031 6.28069 6.37479 6.40071 6.82487 7.43148 8.94529 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019281 B = 0.003057 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.852817 B = 9155.952849 C = 9429.632590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.128 4.128 4 C 0.115 3.885 5 N -0.354 5.354 6 C 0.185 3.815 7 C -0.826 4.826 8 S 2.735 3.265 9 O -0.994 6.994 10 O -0.996 6.996 11 N -1.095 6.095 12 C 0.153 3.847 13 C -0.037 4.037 14 C -0.473 4.473 15 H 0.036 0.964 16 C 0.015 3.985 17 N -0.952 5.952 18 Si 0.923 3.077 19 H -0.270 1.270 20 H -0.214 1.214 21 H -0.307 1.307 22 C -0.158 4.158 23 C -0.191 4.191 24 C 0.152 3.848 25 C -0.117 4.117 26 N -0.310 5.310 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.135 0.865 36 H 0.225 0.775 37 H 0.421 0.579 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.262 0.738 41 H 0.075 0.925 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.072 0.928 45 H 0.106 0.894 46 H 0.099 0.901 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.067 -23.954 -4.960 28.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.166 4.166 4 C -0.004 4.004 5 N -0.130 5.130 6 C 0.030 3.970 7 C -0.927 4.927 8 S 2.826 3.174 9 O -0.984 6.984 10 O -0.986 6.986 11 N -0.855 5.855 12 C 0.027 3.973 13 C -0.040 4.040 14 C -0.511 4.511 15 H 0.054 0.946 16 C -0.182 4.182 17 N -0.593 5.593 18 Si 0.747 3.253 19 H -0.195 1.195 20 H -0.136 1.136 21 H -0.235 1.235 22 C -0.195 4.195 23 C -0.229 4.229 24 C -0.017 4.017 25 C -0.175 4.175 26 N -0.131 5.131 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.122 0.878 35 H 0.153 0.847 36 H 0.242 0.758 37 H 0.257 0.743 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.090 0.910 45 H 0.124 0.876 46 H 0.117 0.883 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.308 -24.126 -4.999 29.546 hybrid contribution 0.598 1.052 0.199 1.226 sum -15.710 -23.073 -4.801 28.324 Atomic orbital electron populations 1.21776 0.95669 1.02272 1.01585 1.21435 0.96163 0.94191 1.03541 1.21850 0.93067 0.99098 1.02607 1.22426 0.96056 0.75049 1.06825 1.49458 1.32985 1.11254 1.19320 1.22967 0.88904 0.91348 0.93778 1.31251 1.29654 1.13484 1.18346 1.00099 0.72364 0.72916 0.72061 1.93481 1.80031 1.76451 1.48477 1.93512 1.73288 1.45584 1.86224 1.54927 1.22944 1.73187 1.34462 1.21232 0.97614 0.94586 0.83841 1.19477 0.94882 0.99494 0.90116 1.20393 1.22592 0.92165 1.15963 0.94563 1.25844 0.98105 0.97107 0.97135 1.70049 1.44430 1.04118 1.40687 0.86133 0.80742 0.79395 0.78999 1.19508 1.13639 1.23470 1.22893 0.97264 0.95327 1.04029 1.23050 1.03746 0.99912 0.96197 1.22019 0.91854 0.95678 0.92142 1.20927 1.05854 0.89652 1.01041 1.77263 1.24521 0.96908 1.14432 0.93288 0.91524 0.93076 0.90690 0.90111 0.92248 0.92217 0.87783 0.84675 0.75821 0.74310 0.91883 0.90237 0.92966 0.90610 0.87272 0.87197 0.90954 0.87587 0.88261 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.91 71.98 0.71 -0.64 16 2 C -0.12 -0.83 5.93 30.59 0.18 -0.64 16 3 C -0.13 -1.49 5.40 30.59 0.17 -1.32 16 4 C 0.12 1.23 6.51 86.38 0.56 1.79 16 5 N -0.35 -7.10 3.68 -348.06 -1.28 -8.38 16 6 C 0.18 3.96 11.08 83.54 0.93 4.88 16 7 C -0.83 -23.23 6.13 21.99 0.13 -23.10 16 8 S 2.74 95.77 5.64 -56.49 -0.32 95.45 16 9 O -0.99 -36.83 17.74 -128.00 -2.27 -39.10 16 10 O -1.00 -42.47 15.69 -128.00 -2.01 -44.48 16 11 N -1.09 -38.69 5.67 -187.50 -1.06 -39.75 16 12 C 0.15 5.52 4.50 86.38 0.39 5.91 16 13 C -0.04 -1.54 0.92 -52.93 -0.05 -1.59 16 14 C -0.47 -25.72 9.12 25.60 0.23 -25.49 16 15 H 0.04 2.20 8.06 -2.91 -0.02 2.18 16 16 C 0.01 0.86 5.47 84.65 0.46 1.33 16 17 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 18 Si 0.92 43.86 25.05 68.60 1.72 45.58 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.21 -8.71 5.42 99.48 0.54 -8.17 16 21 H -0.31 -15.29 7.11 99.48 0.71 -14.58 16 22 C -0.16 -5.42 9.93 30.62 0.30 -5.12 16 23 C -0.19 -6.90 7.63 30.62 0.23 -6.66 16 24 C 0.15 4.27 7.22 43.10 0.31 4.58 16 25 C -0.12 -3.06 8.68 71.23 0.62 -2.44 16 26 N -0.31 -8.09 12.42 -47.39 -0.59 -8.68 16 27 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.14 0.54 8.07 -2.38 -0.02 0.52 16 36 H 0.23 3.07 8.06 -2.91 -0.02 3.05 16 37 H 0.42 14.42 8.71 -96.74 -0.84 13.58 16 38 H 0.06 2.45 4.33 -2.39 -0.01 2.44 16 39 H 0.08 2.24 6.83 -2.39 -0.02 2.22 16 40 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 41 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 42 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 43 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 44 H 0.07 2.88 7.33 -2.39 -0.02 2.86 16 45 H 0.11 2.37 6.85 -2.39 -0.02 2.36 16 46 H 0.10 2.21 8.14 -2.38 -0.02 2.20 16 47 H 0.08 2.52 5.09 -2.39 -0.01 2.51 16 Total: -1.00 -79.30 387.26 -0.36 -79.66 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: -0.03 Total: 28.31 kcal Atomic # 6 Polarization: -53.70 SS G_CDS: 5.19 Total: -48.52 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -2.63 Total: -116.90 kcal Atomic # 8 Polarization: -79.29 SS G_CDS: -4.28 Total: -83.57 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.72 Total: 45.58 kcal Atomic # 16 Polarization: 95.77 SS G_CDS: -0.32 Total: 95.45 kcal Total: -79.30 -0.36 -79.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601408798.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.147 kcal (2) G-P(sol) polarization free energy of solvation -79.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds