Wall clock time and date at job start Sat Apr 11 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50700 * 120.00321 * 2 1 4 4 N 1.46506 * 109.47188 * 124.99947 * 3 2 1 5 5 C 1.46495 * 120.00331 * 275.00735 * 4 3 2 6 6 C 1.50703 * 109.47217 * 274.99746 * 5 4 3 7 7 H 1.08005 * 119.99534 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00037 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00122 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99912 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47153 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47659 * 119.99585 * 10 8 6 13 13 H 1.48498 * 109.47175 * 239.99980 * 10 8 6 14 14 S 1.65605 * 119.99638 * 95.00262 * 4 3 2 15 15 O 1.42098 * 106.40259 * 336.46110 * 14 4 3 16 16 O 1.42097 * 106.40010 * 203.54289 * 14 4 3 17 17 C 1.76193 * 107.21603 * 90.00218 * 14 4 3 18 18 C 1.35325 * 126.03890 * 115.02292 * 17 14 4 19 19 N 1.34948 * 107.74538 * 179.97438 * 18 17 14 20 20 C 1.46496 * 126.03777 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.47294 * 124.99918 * 20 19 18 22 22 C 1.53006 * 109.47127 * 179.97438 * 21 20 19 23 23 C 1.52997 * 109.47127 * 180.02562 * 22 21 20 24 24 N 1.40087 * 107.92716 * 0.24323 * 19 18 17 25 25 C 1.30838 * 108.20510 * 359.59259 * 24 19 18 26 26 C 1.50699 * 125.90165 * 180.14722 * 25 24 19 27 27 H 1.07998 * 120.00409 * 179.97438 * 1 2 3 28 28 H 1.08004 * 120.00044 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.00044 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47122 * 5.00852 * 3 2 1 31 31 H 1.08996 * 109.47401 * 245.00388 * 3 2 1 32 32 H 1.09000 * 109.47086 * 34.99701 * 5 4 3 33 33 H 1.08996 * 109.47205 * 154.99578 * 5 4 3 34 34 H 0.96997 * 119.99991 * 180.02562 * 9 8 6 35 35 H 1.07991 * 126.12388 * 0.02562 * 18 17 14 36 36 H 1.09001 * 109.47054 * 4.99649 * 20 19 18 37 37 H 1.09004 * 109.47074 * 245.00163 * 20 19 18 38 38 H 1.09001 * 109.46832 * 60.00150 * 21 20 19 39 39 H 1.08993 * 109.47194 * 299.99671 * 21 20 19 40 40 H 1.09001 * 109.46801 * 300.00272 * 22 21 20 41 41 H 1.09001 * 109.46998 * 59.99868 * 22 21 20 42 42 H 1.09001 * 109.46832 * 60.00321 * 23 22 21 43 43 H 1.09002 * 109.47153 * 180.02562 * 23 22 21 44 44 H 1.08996 * 109.46952 * 300.00302 * 23 22 21 45 45 H 1.08999 * 109.47472 * 270.29938 * 26 25 24 46 46 H 1.09007 * 109.46909 * 30.29936 * 26 25 24 47 47 H 1.09005 * 109.47120 * 150.29772 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5286 1.7619 2.4523 6 6 2.5992 3.2644 2.5452 7 1 2.9547 3.8412 1.7041 8 6 2.2101 3.9025 3.7037 9 7 1.7767 3.2001 4.7276 10 14 2.2970 5.7650 3.8185 11 1 2.8145 6.3161 2.5404 12 1 0.9399 6.3088 4.0791 13 1 3.2062 6.1507 4.9275 14 16 4.5713 0.8758 0.9172 15 8 4.5923 0.0261 -0.2216 16 8 5.0503 0.4761 2.1940 17 6 5.4768 2.3214 0.4762 18 6 6.4556 2.9021 1.2084 19 7 6.8940 3.9812 0.5269 20 6 7.9500 4.9012 0.9562 21 6 9.0221 4.9905 -0.1316 22 6 10.1248 5.9519 0.3166 23 6 11.1965 6.0416 -0.7716 24 7 6.1566 4.0698 -0.6609 25 6 5.3114 3.0715 -0.6928 26 6 4.3256 2.7831 -1.7955 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0897 31 1 2.6212 1.4026 -0.9314 32 1 1.4984 1.4369 2.5983 33 1 3.1614 1.3201 3.2220 34 1 1.5026 3.6491 5.5426 35 1 6.8210 2.5622 2.1661 36 1 8.3987 4.5339 1.8793 37 1 7.5233 5.8894 1.1279 38 1 8.5734 5.3578 -1.0546 39 1 9.4488 4.0023 -0.3032 40 1 9.6977 6.9400 0.4879 41 1 10.5735 5.5850 1.2397 42 1 10.7474 6.4088 -1.6944 43 1 11.9823 6.7262 -0.4521 44 1 11.6236 5.0536 -0.9433 45 1 3.3872 3.2973 -1.5878 46 1 4.7298 3.1341 -2.7451 47 1 4.1468 1.7093 -1.8514 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601420502.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:35 Heat of formation + Delta-G solvation = 7.920380 kcal Electronic energy + Delta-G solvation = -28818.603081 eV Core-core repulsion = 24937.478141 eV Total energy + Delta-G solvation = -3881.124940 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.08182 -36.67301 -36.26814 -36.22722 -35.11989 -33.37369 -33.16838 -31.84356 -30.61520 -29.66795 -27.58403 -27.18522 -24.86795 -23.80084 -22.28930 -21.53084 -21.39058 -19.98098 -19.62512 -18.11511 -17.29714 -16.73356 -16.32313 -16.04028 -15.64633 -15.40290 -15.07081 -14.55178 -14.47056 -14.11860 -13.95911 -13.64118 -13.56137 -13.11433 -12.94589 -12.66979 -12.51640 -12.43741 -12.19281 -12.03269 -11.82998 -11.60645 -11.57115 -11.43499 -11.32306 -11.26192 -11.17165 -11.14417 -10.89731 -10.82790 -10.67948 -10.46878 -10.17079 -10.03048 -9.75121 -9.12896 -8.98725 -8.82623 -8.47972 -8.01580 -6.09497 -4.14655 1.21219 1.89320 2.50863 2.57714 2.72097 3.21871 3.30569 3.34330 3.87349 4.22740 4.37394 4.50853 4.54020 4.67775 4.77315 4.81402 4.94004 5.11226 5.15577 5.19704 5.25263 5.34152 5.37884 5.45860 5.45943 5.53299 5.58534 5.67907 5.78331 5.79544 5.81961 5.85764 5.98096 5.99638 6.08433 6.21067 6.36252 6.55150 6.70909 7.02350 7.02832 7.12974 7.40233 7.48647 7.68278 7.72252 7.88713 8.18595 8.90950 9.50839 10.98610 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009685 B = 0.004509 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.457793 B = 6208.829107 C = 7961.629861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.160 4.160 3 C 0.149 3.851 4 N -0.977 5.977 5 C 0.246 3.754 6 C -0.534 4.534 7 H 0.061 0.939 8 C 0.065 3.935 9 N -0.889 5.889 10 Si 0.888 3.112 11 H -0.275 1.275 12 H -0.282 1.282 13 H -0.284 1.284 14 S 2.719 3.281 15 O -0.979 6.979 16 O -0.967 6.967 17 C -0.796 4.796 18 C 0.183 3.817 19 N -0.364 5.364 20 C 0.127 3.873 21 C -0.131 4.131 22 C -0.122 4.122 23 C -0.151 4.151 24 N -0.298 5.298 25 C 0.160 3.840 26 C -0.102 4.102 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.052 0.948 34 H 0.263 0.737 35 H 0.189 0.811 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.374 1.821 -10.132 14.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.180 4.180 3 C 0.023 3.977 4 N -0.815 5.815 5 C 0.124 3.876 6 C -0.574 4.574 7 H 0.079 0.921 8 C -0.137 4.137 9 N -0.528 5.528 10 Si 0.716 3.284 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.210 1.210 14 S 2.807 3.193 15 O -0.969 6.969 16 O -0.958 6.958 17 C -0.893 4.893 18 C 0.031 3.969 19 N -0.142 5.142 20 C 0.006 3.994 21 C -0.170 4.170 22 C -0.161 4.161 23 C -0.209 4.209 24 N -0.119 5.119 25 C -0.010 4.010 26 C -0.160 4.160 27 H 0.111 0.889 28 H 0.116 0.884 29 H 0.126 0.874 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.206 0.794 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.108 0.892 46 H 0.099 0.901 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.247 2.219 -10.404 15.481 hybrid contribution -0.217 1.311 0.758 1.529 sum 11.030 3.530 -9.646 15.072 Atomic orbital electron populations 1.23764 0.95817 1.01520 1.01561 1.23463 0.96311 0.99369 0.98826 1.20408 0.93265 0.95520 0.88516 1.57336 1.23817 1.82745 1.17595 1.19218 0.97105 0.94700 0.76548 1.21604 1.44023 0.92128 0.99627 0.92053 1.24903 0.95174 0.98059 0.95611 1.69941 1.43467 1.35300 1.04087 0.86599 0.77820 0.86005 0.77945 1.19935 1.20844 1.21016 1.00950 0.72551 0.73048 0.72724 1.93491 1.86996 1.63624 1.52808 1.93514 1.80352 1.81018 1.40901 1.31634 1.20760 1.30191 1.06756 1.22402 0.92181 0.85954 0.96412 1.48969 1.28700 1.21065 1.15423 1.21893 0.85903 0.93443 0.98193 1.21905 0.95186 1.00835 0.99037 1.21469 0.95910 0.99534 0.99141 1.21743 0.98466 1.01833 0.98825 1.77195 1.09873 1.22430 1.02437 1.21687 0.94729 0.90701 0.93867 1.20719 0.96495 1.03966 0.94867 0.88944 0.88449 0.87435 0.89554 0.90249 0.93998 0.92968 0.92727 0.79365 0.88251 0.89357 0.90276 0.91295 0.91559 0.91631 0.92588 0.92558 0.92666 0.89171 0.90079 0.88633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.70 14.32 29.02 0.42 -2.28 16 2 C -0.16 -2.57 9.84 -36.02 -0.35 -2.93 16 3 C 0.15 2.56 5.74 -5.19 -0.03 2.53 16 4 N -0.98 -20.05 2.75 -116.95 -0.32 -20.37 16 5 C 0.25 6.06 5.43 -5.19 -0.03 6.03 16 6 C -0.53 -14.05 9.38 -34.44 -0.32 -14.38 16 7 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 8 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 10 Si 0.89 21.00 29.54 -169.99 -5.02 15.97 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 14 S 2.72 54.74 5.51 -107.50 -0.59 54.15 16 15 O -0.98 -19.55 15.66 -57.17 -0.90 -20.44 16 16 O -0.97 -22.00 16.29 -57.17 -0.93 -22.93 16 17 C -0.80 -14.90 6.15 -40.01 -0.25 -15.15 16 18 C 0.18 3.11 11.07 -17.22 -0.19 2.92 16 19 N -0.36 -5.73 3.68 -61.37 -0.23 -5.95 16 20 C 0.13 1.42 6.51 -4.05 -0.03 1.39 16 21 C -0.13 -1.27 5.41 -26.73 -0.14 -1.42 16 22 C -0.12 -0.91 5.93 -26.73 -0.16 -1.07 16 23 C -0.15 -1.06 9.91 37.16 0.37 -0.70 16 24 N -0.30 -5.21 12.42 33.67 0.42 -4.79 16 25 C 0.16 2.81 7.22 -82.40 -0.59 2.22 16 26 C -0.10 -1.46 9.01 36.01 0.32 -1.13 16 27 H 0.09 1.15 8.06 -52.49 -0.42 0.73 16 28 H 0.10 1.34 7.84 -52.48 -0.41 0.93 16 29 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 30 H 0.09 1.47 7.76 -51.93 -0.40 1.07 16 31 H 0.08 1.19 4.22 -51.93 -0.22 0.97 16 32 H 0.04 1.07 8.11 -51.93 -0.42 0.65 16 33 H 0.05 1.41 6.91 -51.93 -0.36 1.05 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.19 2.73 8.06 -52.49 -0.42 2.31 16 36 H 0.10 0.86 8.07 -51.93 -0.42 0.44 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 1.20 7.85 -51.93 -0.41 0.79 16 46 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.10 1.34 5.23 -51.93 -0.27 1.07 16 LS Contribution 401.42 15.07 6.05 6.05 Total: -1.00 -33.35 401.42 -9.40 -42.75 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -7.53 Total: 2.43 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -1.09 Total: -22.28 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.61 Total: -55.69 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -1.83 Total: -43.38 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 54.74 SS G_CDS: -0.59 Total: 54.15 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.35 -9.40 -42.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601420502.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.675 kcal (2) G-P(sol) polarization free energy of solvation -33.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds