Wall clock time and date at job start Sat Apr 11 2020 06:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50700 * 120.00321 * 2 1 4 4 N 1.46506 * 109.47188 * 124.99947 * 3 2 1 5 5 C 1.46495 * 120.00331 * 275.00735 * 4 3 2 6 6 C 1.50703 * 109.47217 * 274.99746 * 5 4 3 7 7 H 1.08005 * 119.99534 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00037 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00122 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99912 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47153 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47659 * 119.99585 * 10 8 6 13 13 H 1.48498 * 109.47175 * 239.99980 * 10 8 6 14 14 S 1.65605 * 119.99638 * 95.00262 * 4 3 2 15 15 O 1.42098 * 106.40259 * 336.46110 * 14 4 3 16 16 O 1.42097 * 106.40010 * 203.54289 * 14 4 3 17 17 C 1.76193 * 107.21603 * 90.00218 * 14 4 3 18 18 C 1.35325 * 126.03890 * 115.02292 * 17 14 4 19 19 N 1.34948 * 107.74538 * 179.97438 * 18 17 14 20 20 C 1.46496 * 126.03777 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.47294 * 124.99918 * 20 19 18 22 22 C 1.53006 * 109.47127 * 179.97438 * 21 20 19 23 23 C 1.52997 * 109.47127 * 180.02562 * 22 21 20 24 24 N 1.40087 * 107.92716 * 0.24323 * 19 18 17 25 25 C 1.30838 * 108.20510 * 359.59259 * 24 19 18 26 26 C 1.50699 * 125.90165 * 180.14722 * 25 24 19 27 27 H 1.07998 * 120.00409 * 179.97438 * 1 2 3 28 28 H 1.08004 * 120.00044 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.00044 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47122 * 5.00852 * 3 2 1 31 31 H 1.08996 * 109.47401 * 245.00388 * 3 2 1 32 32 H 1.09000 * 109.47086 * 34.99701 * 5 4 3 33 33 H 1.08996 * 109.47205 * 154.99578 * 5 4 3 34 34 H 0.96997 * 119.99991 * 180.02562 * 9 8 6 35 35 H 1.07991 * 126.12388 * 0.02562 * 18 17 14 36 36 H 1.09001 * 109.47054 * 4.99649 * 20 19 18 37 37 H 1.09004 * 109.47074 * 245.00163 * 20 19 18 38 38 H 1.09001 * 109.46832 * 60.00150 * 21 20 19 39 39 H 1.08993 * 109.47194 * 299.99671 * 21 20 19 40 40 H 1.09001 * 109.46801 * 300.00272 * 22 21 20 41 41 H 1.09001 * 109.46998 * 59.99868 * 22 21 20 42 42 H 1.09001 * 109.46832 * 60.00321 * 23 22 21 43 43 H 1.09002 * 109.47153 * 180.02562 * 23 22 21 44 44 H 1.08996 * 109.46952 * 300.00302 * 23 22 21 45 45 H 1.08999 * 109.47472 * 270.29938 * 26 25 24 46 46 H 1.09007 * 109.46909 * 30.29936 * 26 25 24 47 47 H 1.09005 * 109.47120 * 150.29772 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5286 1.7619 2.4523 6 6 2.5992 3.2644 2.5452 7 1 2.9547 3.8412 1.7041 8 6 2.2101 3.9025 3.7037 9 7 1.7767 3.2001 4.7276 10 14 2.2970 5.7650 3.8185 11 1 2.8145 6.3161 2.5404 12 1 0.9399 6.3088 4.0791 13 1 3.2062 6.1507 4.9275 14 16 4.5713 0.8758 0.9172 15 8 4.5923 0.0261 -0.2216 16 8 5.0503 0.4761 2.1940 17 6 5.4768 2.3214 0.4762 18 6 6.4556 2.9021 1.2084 19 7 6.8940 3.9812 0.5269 20 6 7.9500 4.9012 0.9562 21 6 9.0221 4.9905 -0.1316 22 6 10.1248 5.9519 0.3166 23 6 11.1965 6.0416 -0.7716 24 7 6.1566 4.0698 -0.6609 25 6 5.3114 3.0715 -0.6928 26 6 4.3256 2.7831 -1.7955 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0897 31 1 2.6212 1.4026 -0.9314 32 1 1.4984 1.4369 2.5983 33 1 3.1614 1.3201 3.2220 34 1 1.5026 3.6491 5.5426 35 1 6.8210 2.5622 2.1661 36 1 8.3987 4.5339 1.8793 37 1 7.5233 5.8894 1.1279 38 1 8.5734 5.3578 -1.0546 39 1 9.4488 4.0023 -0.3032 40 1 9.6977 6.9400 0.4879 41 1 10.5735 5.5850 1.2397 42 1 10.7474 6.4088 -1.6944 43 1 11.9823 6.7262 -0.4521 44 1 11.6236 5.0536 -0.9433 45 1 3.3872 3.2973 -1.5878 46 1 4.7298 3.1341 -2.7451 47 1 4.1468 1.7093 -1.8514 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601420502.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:34 Heat of formation + Delta-G solvation = -12.812764 kcal Electronic energy + Delta-G solvation = -28819.502138 eV Core-core repulsion = 24937.478141 eV Total energy + Delta-G solvation = -3882.023996 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.35350 -38.25881 -37.84811 -37.08575 -36.77871 -34.97399 -34.39268 -33.47299 -31.74538 -30.81074 -29.29476 -28.31713 -26.46331 -24.78404 -24.07598 -22.74178 -22.18843 -21.26269 -20.92184 -19.59044 -18.69393 -18.58447 -18.03179 -17.29991 -16.94023 -16.67569 -16.37260 -16.09216 -15.84796 -15.34954 -15.14033 -14.82196 -14.62394 -14.41293 -14.17776 -14.05034 -13.79326 -13.64875 -13.44560 -13.39831 -13.22575 -13.05655 -12.97364 -12.91989 -12.87073 -12.45501 -12.41249 -12.28087 -12.25516 -12.18271 -12.04511 -11.82472 -11.62393 -11.59932 -11.49097 -10.58032 -10.43147 -10.22566 -10.12245 -9.70312 -8.15880 -6.27763 -0.35455 0.57378 1.21743 1.36198 1.38314 1.39346 1.48593 1.49767 2.28742 2.43444 2.90071 3.14997 3.23255 3.53219 3.69546 3.77884 3.84564 4.01255 4.06320 4.10674 4.22943 4.28653 4.32722 4.43902 4.45139 4.55618 4.67122 4.69775 4.76989 4.84077 4.89840 4.96746 4.97044 5.01690 5.15523 5.17769 5.25655 5.35218 5.38075 5.46109 5.52555 5.76234 5.81596 5.84206 5.87119 6.07971 6.14145 6.42327 6.84280 7.41315 8.92355 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009685 B = 0.004509 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.457793 B = 6208.829107 C = 7961.629861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.187 4.187 3 C 0.142 3.858 4 N -0.980 5.980 5 C 0.264 3.736 6 C -0.535 4.535 7 H 0.061 0.939 8 C 0.017 3.983 9 N -0.924 5.924 10 Si 0.951 3.049 11 H -0.273 1.273 12 H -0.277 1.277 13 H -0.280 1.280 14 S 2.730 3.270 15 O -0.981 6.981 16 O -1.000 7.000 17 C -0.820 4.820 18 C 0.175 3.825 19 N -0.358 5.358 20 C 0.113 3.887 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.152 4.152 24 N -0.313 5.313 25 C 0.150 3.850 26 C -0.106 4.106 27 H 0.114 0.886 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.026 0.974 33 H 0.023 0.977 34 H 0.265 0.735 35 H 0.208 0.792 36 H 0.128 0.872 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.099 0.901 46 H 0.103 0.897 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.914 3.300 -10.921 15.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.207 4.207 3 C 0.017 3.983 4 N -0.818 5.818 5 C 0.140 3.860 6 C -0.575 4.575 7 H 0.080 0.920 8 C -0.182 4.182 9 N -0.564 5.564 10 Si 0.777 3.223 11 H -0.197 1.197 12 H -0.203 1.203 13 H -0.206 1.206 14 S 2.821 3.179 15 O -0.971 6.971 16 O -0.991 6.991 17 C -0.920 4.920 18 C 0.021 3.979 19 N -0.134 5.134 20 C -0.006 4.006 21 C -0.160 4.160 22 C -0.155 4.155 23 C -0.210 4.210 24 N -0.134 5.134 25 C -0.019 4.019 26 C -0.164 4.164 27 H 0.132 0.868 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.224 0.776 36 H 0.146 0.854 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.781 3.688 -11.220 16.681 hybrid contribution -0.351 0.848 0.961 1.329 sum 11.429 4.535 -10.259 16.014 Atomic orbital electron populations 1.24010 0.95252 1.02858 0.98612 1.23420 0.97043 0.98711 1.01535 1.20648 0.93205 0.96279 0.88121 1.57215 1.24715 1.82789 1.17061 1.18725 0.95508 0.93843 0.77915 1.21810 1.43277 0.92854 0.99520 0.92044 1.25651 0.94974 1.02258 0.95360 1.70051 1.44569 1.37095 1.04693 0.85623 0.77958 0.80882 0.77862 1.19720 1.20269 1.20569 1.00366 0.72251 0.73334 0.71998 1.93477 1.86999 1.64237 1.52404 1.93465 1.80905 1.82082 1.42614 1.31414 1.21976 1.30422 1.08186 1.22773 0.91877 0.86248 0.97015 1.49335 1.28665 1.20869 1.14545 1.22376 0.85318 0.93074 0.99851 1.21821 0.95235 1.01097 0.97867 1.21452 0.95198 0.99144 0.99734 1.21752 0.98607 1.02064 0.98529 1.77148 1.10210 1.22588 1.03457 1.22163 0.95193 0.90385 0.94207 1.20865 0.96364 1.04152 0.95037 0.86778 0.87881 0.87699 0.89599 0.88176 0.95583 0.95942 0.92551 0.77552 0.85445 0.88749 0.91930 0.91819 0.91046 0.90327 0.93092 0.91439 0.92786 0.88228 0.87852 0.88674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.60 14.32 67.79 0.97 -3.63 16 2 C -0.19 -5.93 9.84 25.65 0.25 -5.67 16 3 C 0.14 4.84 5.74 85.63 0.49 5.33 16 4 N -0.98 -40.69 2.75 -523.92 -1.44 -42.14 16 5 C 0.26 13.28 5.43 85.63 0.47 13.75 16 6 C -0.54 -28.25 9.38 25.60 0.24 -28.00 16 7 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 8 C 0.02 0.93 5.46 84.65 0.46 1.39 16 9 N -0.92 -53.07 13.29 21.45 0.28 -52.78 16 10 Si 0.95 42.68 29.54 68.60 2.03 44.71 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 13 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 14 S 2.73 111.14 5.51 -56.49 -0.31 110.82 16 15 O -0.98 -39.20 15.66 -128.00 -2.00 -41.20 16 16 O -1.00 -46.69 16.29 -128.00 -2.09 -48.78 16 17 C -0.82 -30.46 6.15 21.99 0.14 -30.32 16 18 C 0.18 5.84 11.07 83.54 0.93 6.77 16 19 N -0.36 -10.79 3.68 -348.07 -1.28 -12.07 16 20 C 0.11 2.30 6.51 86.38 0.56 2.87 16 21 C -0.12 -2.17 5.41 30.60 0.17 -2.00 16 22 C -0.12 -1.49 5.93 30.60 0.18 -1.31 16 23 C -0.15 -1.87 9.91 71.98 0.71 -1.15 16 24 N -0.31 -10.57 12.42 -47.38 -0.59 -11.16 16 25 C 0.15 5.14 7.22 43.10 0.31 5.46 16 26 C -0.11 -2.88 9.01 71.24 0.64 -2.24 16 27 H 0.11 2.59 8.06 -2.91 -0.02 2.56 16 28 H 0.10 2.67 7.84 -2.91 -0.02 2.65 16 29 H 0.10 3.35 8.06 -2.91 -0.02 3.32 16 30 H 0.09 2.89 7.76 -2.39 -0.02 2.88 16 31 H 0.10 2.93 4.22 -2.39 -0.01 2.92 16 32 H 0.03 1.38 8.11 -2.39 -0.02 1.36 16 33 H 0.02 1.26 6.91 -2.39 -0.02 1.25 16 34 H 0.27 14.37 8.31 -92.71 -0.77 13.59 16 35 H 0.21 5.86 8.06 -2.92 -0.02 5.84 16 36 H 0.13 1.87 8.07 -2.39 -0.02 1.85 16 37 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 39 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 44 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.10 2.49 7.85 -2.39 -0.02 2.47 16 46 H 0.10 2.29 8.14 -2.38 -0.02 2.28 16 47 H 0.09 2.56 5.23 -2.38 -0.01 2.55 16 Total: -1.00 -71.19 401.42 2.06 -69.12 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.94 Total: 22.24 kcal Atomic # 6 Polarization: -45.29 SS G_CDS: 6.52 Total: -38.78 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -3.02 Total: -118.14 kcal Atomic # 8 Polarization: -85.89 SS G_CDS: -4.09 Total: -89.98 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: 111.14 SS G_CDS: -0.31 Total: 110.82 kcal Total: -71.19 2.06 -69.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601420502.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.310 kcal (2) G-P(sol) polarization free energy of solvation -71.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds