Wall clock time and date at job start Sat Apr 11 2020 06:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50698 * 109.47162 * 2 1 4 4 N 1.30839 * 125.90014 * 275.52826 * 3 2 1 5 5 N 1.40087 * 108.20626 * 180.25688 * 4 3 2 6 6 C 1.46497 * 126.03457 * 179.73939 * 5 4 3 7 7 C 1.34942 * 107.92347 * 359.72340 * 5 4 3 8 8 C 1.50702 * 126.12584 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47094 * 90.02502 * 8 7 5 10 10 C 1.35312 * 107.74726 * 359.97438 * 7 5 4 11 11 S 1.76200 * 126.04114 * 179.97438 * 10 7 5 12 12 O 1.42099 * 106.40591 * 150.76627 * 11 10 7 13 13 O 1.42107 * 106.40340 * 17.84422 * 11 10 7 14 14 N 1.65603 * 107.21954 * 264.30820 * 11 10 7 15 15 C 1.46494 * 120.00159 * 66.34402 * 14 11 10 16 16 C 1.53007 * 109.47228 * 164.18019 * 15 14 11 17 17 C 1.50692 * 115.54608 * 57.96406 * 16 15 14 18 18 H 1.08005 * 120.00155 * 268.49929 * 17 16 15 19 19 C 1.37882 * 120.00094 * 88.50278 * 17 16 15 20 20 N 1.31509 * 119.99880 * 3.12001 * 19 17 16 21 21 Si 1.86796 * 120.00032 * 183.11903 * 19 17 16 22 22 H 1.48502 * 109.47009 * 60.00436 * 21 19 17 23 23 H 1.48498 * 109.47101 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47251 * 300.00291 * 21 19 17 25 25 C 1.52999 * 117.49715 * 272.29580 * 16 15 14 26 26 C 1.52998 * 117.49757 * 203.63401 * 16 15 14 27 27 H 1.09006 * 109.47687 * 185.08493 * 1 2 3 28 28 H 1.09006 * 109.47107 * 305.08022 * 1 2 3 29 29 H 1.09000 * 109.47529 * 65.07900 * 1 2 3 30 30 H 1.09007 * 109.46794 * 239.99930 * 2 1 3 31 31 H 1.08994 * 109.47549 * 120.00060 * 2 1 3 32 32 H 1.08996 * 109.47403 * 269.97583 * 6 5 4 33 33 H 1.08999 * 109.47209 * 29.98345 * 6 5 4 34 34 H 1.09007 * 109.46702 * 149.97840 * 6 5 4 35 35 H 1.09004 * 109.47167 * 210.02566 * 8 7 5 36 36 H 1.09000 * 109.47207 * 330.02319 * 8 7 5 37 37 H 1.09000 * 109.47243 * 59.99839 * 9 8 7 38 38 H 1.09005 * 109.47385 * 179.97438 * 9 8 7 39 39 H 1.09004 * 109.47165 * 300.00065 * 9 8 7 40 40 H 0.97004 * 119.99553 * 246.34114 * 14 11 10 41 41 H 1.08993 * 109.47223 * 284.18375 * 15 14 11 42 42 H 1.09002 * 109.46763 * 44.18264 * 15 14 11 43 43 H 0.97006 * 120.00128 * 185.00520 * 20 19 17 44 44 H 1.08997 * 117.50298 * 359.97438 * 25 16 15 45 45 H 1.08997 * 117.49357 * 145.02270 * 25 16 15 46 46 H 1.09004 * 117.49550 * 214.98030 * 26 16 15 47 47 H 1.08994 * 117.49920 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1917 2.1782 -1.0549 5 7 2.6809 3.4208 -0.6317 6 6 3.0028 4.5597 -1.4951 7 6 2.8028 3.3834 0.7117 8 6 3.2947 4.5044 1.5907 9 6 2.1099 5.3695 2.0247 10 6 2.4042 2.1592 1.1281 11 16 2.3689 1.5922 2.7960 12 8 1.3214 0.6352 2.8725 13 8 2.4234 2.7520 3.6154 14 7 3.7785 0.7649 3.0625 15 6 5.0593 1.4759 3.0467 16 6 6.1358 0.6019 3.6937 17 6 6.3469 -0.7473 3.0567 18 1 5.7974 -1.6055 3.4147 19 6 7.2416 -0.8864 2.0168 20 7 7.9556 0.1448 1.6214 21 14 7.4395 -2.5394 1.1697 22 1 6.1398 -2.9534 0.5825 23 1 8.4557 -2.4253 0.0930 24 1 7.8805 -3.5538 2.1606 25 6 6.3096 0.7021 5.2105 26 6 7.3616 1.3072 4.2775 27 1 -0.3635 -1.0236 0.0911 28 1 -0.3633 0.5907 0.8410 29 1 -0.3634 0.4330 -0.9320 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 4.0455 4.4965 -1.8062 33 1 2.3594 4.5420 -2.3748 34 1 2.8428 5.4880 -0.9466 35 1 3.7825 4.0877 2.4719 36 1 4.0068 5.1153 1.0359 37 1 1.3978 4.7586 2.5795 38 1 2.4656 6.1801 2.6609 39 1 1.6220 5.7862 1.1435 40 1 3.7560 -0.1904 3.2291 41 1 5.3402 1.6956 2.0168 42 1 4.9644 2.4078 3.6042 43 1 8.5310 0.0670 0.8443 44 1 5.6574 1.3909 5.7475 45 1 6.5771 -0.2079 5.7475 46 1 8.3207 0.7950 4.2012 47 1 7.4013 2.3937 4.2003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619529270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:47 Heat of formation + Delta-G solvation = 7.560163 kcal Electronic energy + Delta-G solvation = -29707.082616 eV Core-core repulsion = 25825.942056 eV Total energy + Delta-G solvation = -3881.140560 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.40084 -37.10753 -36.76057 -35.36118 -35.00420 -33.59355 -33.20169 -31.93302 -31.76098 -29.19768 -26.83547 -25.93235 -24.90100 -23.90026 -23.50545 -21.11049 -20.96184 -19.43157 -19.31784 -18.68039 -17.31752 -16.79434 -16.16067 -15.81750 -15.61672 -15.18979 -14.70893 -14.61389 -14.34652 -14.10508 -13.90140 -13.60796 -13.47216 -13.23538 -12.95281 -12.79800 -12.49359 -12.42211 -12.03057 -11.95939 -11.74296 -11.62967 -11.59179 -11.38945 -11.25684 -11.21993 -11.03244 -10.95491 -10.91471 -10.80684 -10.51521 -10.28233 -10.17162 -9.47130 -9.13821 -9.12816 -8.98486 -8.68390 -8.37141 -8.11838 -6.09168 -4.16944 1.02270 1.65237 2.38005 2.44104 3.27360 3.32445 3.35401 3.72671 4.24563 4.30760 4.34422 4.35912 4.70019 4.86174 4.92810 4.97876 5.17717 5.19236 5.20848 5.26659 5.34102 5.44252 5.50128 5.57134 5.65880 5.71738 5.85227 5.89460 6.01930 6.10186 6.20177 6.27403 6.30067 6.36470 6.39625 6.46087 6.56331 6.59246 6.79252 6.87044 7.00395 7.13296 7.41813 7.60044 7.61278 7.79977 7.84335 8.36459 8.84962 9.50182 10.98539 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010388 B = 0.004935 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.860874 B = 5672.603503 C = 6148.038649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.057 4.057 3 C 0.171 3.829 4 N -0.299 5.299 5 N -0.364 5.364 6 C 0.093 3.907 7 C 0.214 3.786 8 C -0.086 4.086 9 C -0.141 4.141 10 C -0.809 4.809 11 S 2.718 3.282 12 O -0.971 6.971 13 O -0.971 6.971 14 N -1.096 6.096 15 C 0.164 3.836 16 C 0.031 3.969 17 C -0.494 4.494 18 H 0.061 0.939 19 C 0.074 3.926 20 N -0.877 5.877 21 Si 0.886 3.114 22 H -0.275 1.275 23 H -0.288 1.288 24 H -0.276 1.276 25 C -0.211 4.211 26 C -0.143 4.143 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.047 0.953 40 H 0.421 0.579 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.260 0.740 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.087 0.913 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.114 9.243 -3.654 14.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.097 4.097 3 C 0.001 3.999 4 N -0.118 5.118 5 N -0.141 5.141 6 C -0.048 4.048 7 C 0.079 3.921 8 C -0.125 4.125 9 C -0.199 4.199 10 C -0.906 4.906 11 S 2.805 3.195 12 O -0.961 6.961 13 O -0.961 6.961 14 N -0.858 5.858 15 C 0.038 3.962 16 C 0.029 3.971 17 C -0.532 4.532 18 H 0.079 0.921 19 C -0.129 4.129 20 N -0.514 5.514 21 Si 0.713 3.287 22 H -0.200 1.200 23 H -0.214 1.214 24 H -0.201 1.201 25 C -0.248 4.248 26 C -0.182 4.182 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.132 0.868 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.257 0.743 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.106 0.894 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.642 9.864 -4.667 15.243 hybrid contribution 0.819 -1.106 -0.673 1.533 sum -9.823 8.758 -5.340 14.202 Atomic orbital electron populations 1.21649 0.93579 1.02547 1.01983 1.20222 0.97036 0.87954 1.04455 1.21788 0.93465 0.96117 0.88483 1.77323 1.21741 0.90548 1.22160 1.48821 1.48862 1.11756 1.04653 1.21972 1.02716 0.85129 0.95010 1.20943 0.91587 0.94923 0.84618 1.20709 0.99328 0.93630 0.98860 1.21678 0.97597 0.99600 1.01033 1.31336 1.30269 1.03763 1.25254 1.00894 0.72576 0.73215 0.72837 1.93526 1.54163 1.61452 1.86923 1.93512 1.86796 1.50559 1.65196 1.55185 1.21382 1.21841 1.87384 1.20820 0.82235 0.92881 1.00242 1.18911 0.93142 0.95841 0.89181 1.20330 1.23119 0.92273 1.17434 0.92119 1.24952 0.94513 0.96401 0.97067 1.69986 1.26552 1.30176 1.24675 0.86766 0.78005 0.84590 0.79332 1.20036 1.21400 1.20147 1.23068 1.04619 1.01872 0.95255 1.22479 0.95288 0.96811 1.03603 0.91629 0.91555 0.93058 0.89837 0.88714 0.90102 0.88983 0.89196 0.86766 0.89902 0.90869 0.91030 0.93406 0.74298 0.92382 0.93349 0.93006 0.91459 0.90419 0.89443 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.89 37.15 0.37 -1.51 16 2 C -0.06 -0.88 5.78 -27.89 -0.16 -1.04 16 3 C 0.17 2.93 6.46 -82.41 -0.53 2.40 16 4 N -0.30 -5.05 12.58 33.67 0.42 -4.63 16 5 N -0.36 -5.29 4.01 -63.89 -0.26 -5.55 16 6 C 0.09 0.86 11.09 59.85 0.66 1.53 16 7 C 0.21 3.26 6.18 -82.27 -0.51 2.75 16 8 C -0.09 -1.09 5.11 -27.88 -0.14 -1.23 16 9 C -0.14 -1.56 9.71 37.16 0.36 -1.20 16 10 C -0.81 -13.80 6.16 -40.02 -0.25 -14.05 16 11 S 2.72 47.73 5.59 -107.50 -0.60 47.13 16 12 O -0.97 -18.05 15.82 -57.17 -0.90 -18.95 16 13 O -0.97 -17.57 13.86 -57.17 -0.79 -18.36 16 14 N -1.10 -20.59 5.92 -10.61 -0.06 -20.65 16 15 C 0.16 3.38 6.10 -4.04 -0.02 3.35 16 16 C 0.03 0.72 1.68 -155.66 -0.26 0.45 16 17 C -0.49 -12.47 8.14 -34.44 -0.28 -12.75 16 18 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 19 C 0.07 1.93 5.42 -17.82 -0.10 1.83 16 20 N -0.88 -23.56 12.43 55.43 0.69 -22.87 16 21 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.21 -4.41 9.94 -26.69 -0.27 -4.67 16 26 C -0.14 -3.20 9.03 -26.69 -0.24 -3.44 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.96 7.80 -51.93 -0.41 0.55 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.09 1.49 6.79 -51.93 -0.35 1.13 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.59 7.66 -51.93 -0.40 0.20 16 35 H 0.11 1.61 6.32 -51.93 -0.33 1.28 16 36 H 0.08 0.82 7.72 -51.93 -0.40 0.42 16 37 H 0.07 0.94 7.25 -51.93 -0.38 0.56 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.42 7.85 8.10 -34.47 -0.28 7.57 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.05 0.92 7.46 -51.93 -0.39 0.53 16 43 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 44 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 46 H 0.09 2.12 8.03 -51.93 -0.42 1.70 16 47 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 394.61 15.07 5.95 5.95 Total: -1.00 -31.31 394.61 -9.49 -40.80 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -7.54 Total: 9.35 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: -1.37 Total: -27.57 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.79 Total: -53.70 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -1.70 Total: -37.31 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 47.73 SS G_CDS: -0.60 Total: 47.13 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.31 -9.49 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619529270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.358 kcal (2) G-P(sol) polarization free energy of solvation -31.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds