Wall clock time and date at job start Sat Apr 11 2020 06:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50698 * 109.47162 * 2 1 4 4 N 1.30839 * 125.90014 * 275.52826 * 3 2 1 5 5 N 1.40087 * 108.20626 * 180.25688 * 4 3 2 6 6 C 1.46497 * 126.03457 * 179.73939 * 5 4 3 7 7 C 1.34942 * 107.92347 * 359.72340 * 5 4 3 8 8 C 1.50702 * 126.12584 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47094 * 90.02502 * 8 7 5 10 10 C 1.35312 * 107.74726 * 359.97438 * 7 5 4 11 11 S 1.76200 * 126.04114 * 179.97438 * 10 7 5 12 12 O 1.42099 * 106.40591 * 150.76627 * 11 10 7 13 13 O 1.42107 * 106.40340 * 17.84422 * 11 10 7 14 14 N 1.65603 * 107.21954 * 264.30820 * 11 10 7 15 15 C 1.46494 * 120.00159 * 66.34402 * 14 11 10 16 16 C 1.53007 * 109.47228 * 164.18019 * 15 14 11 17 17 C 1.50692 * 115.54608 * 57.96406 * 16 15 14 18 18 H 1.08005 * 120.00155 * 268.49929 * 17 16 15 19 19 C 1.37882 * 120.00094 * 88.50278 * 17 16 15 20 20 N 1.31509 * 119.99880 * 3.12001 * 19 17 16 21 21 Si 1.86796 * 120.00032 * 183.11903 * 19 17 16 22 22 H 1.48502 * 109.47009 * 60.00436 * 21 19 17 23 23 H 1.48498 * 109.47101 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47251 * 300.00291 * 21 19 17 25 25 C 1.52999 * 117.49715 * 272.29580 * 16 15 14 26 26 C 1.52998 * 117.49757 * 203.63401 * 16 15 14 27 27 H 1.09006 * 109.47687 * 185.08493 * 1 2 3 28 28 H 1.09006 * 109.47107 * 305.08022 * 1 2 3 29 29 H 1.09000 * 109.47529 * 65.07900 * 1 2 3 30 30 H 1.09007 * 109.46794 * 239.99930 * 2 1 3 31 31 H 1.08994 * 109.47549 * 120.00060 * 2 1 3 32 32 H 1.08996 * 109.47403 * 269.97583 * 6 5 4 33 33 H 1.08999 * 109.47209 * 29.98345 * 6 5 4 34 34 H 1.09007 * 109.46702 * 149.97840 * 6 5 4 35 35 H 1.09004 * 109.47167 * 210.02566 * 8 7 5 36 36 H 1.09000 * 109.47207 * 330.02319 * 8 7 5 37 37 H 1.09000 * 109.47243 * 59.99839 * 9 8 7 38 38 H 1.09005 * 109.47385 * 179.97438 * 9 8 7 39 39 H 1.09004 * 109.47165 * 300.00065 * 9 8 7 40 40 H 0.97004 * 119.99553 * 246.34114 * 14 11 10 41 41 H 1.08993 * 109.47223 * 284.18375 * 15 14 11 42 42 H 1.09002 * 109.46763 * 44.18264 * 15 14 11 43 43 H 0.97006 * 120.00128 * 185.00520 * 20 19 17 44 44 H 1.08997 * 117.50298 * 359.97438 * 25 16 15 45 45 H 1.08997 * 117.49357 * 145.02270 * 25 16 15 46 46 H 1.09004 * 117.49550 * 214.98030 * 26 16 15 47 47 H 1.08994 * 117.49920 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1917 2.1782 -1.0549 5 7 2.6809 3.4208 -0.6317 6 6 3.0028 4.5597 -1.4951 7 6 2.8028 3.3834 0.7117 8 6 3.2947 4.5044 1.5907 9 6 2.1099 5.3695 2.0247 10 6 2.4042 2.1592 1.1281 11 16 2.3689 1.5922 2.7960 12 8 1.3214 0.6352 2.8725 13 8 2.4234 2.7520 3.6154 14 7 3.7785 0.7649 3.0625 15 6 5.0593 1.4759 3.0467 16 6 6.1358 0.6019 3.6937 17 6 6.3469 -0.7473 3.0567 18 1 5.7974 -1.6055 3.4147 19 6 7.2416 -0.8864 2.0168 20 7 7.9556 0.1448 1.6214 21 14 7.4395 -2.5394 1.1697 22 1 6.1398 -2.9534 0.5825 23 1 8.4557 -2.4253 0.0930 24 1 7.8805 -3.5538 2.1606 25 6 6.3096 0.7021 5.2105 26 6 7.3616 1.3072 4.2775 27 1 -0.3635 -1.0236 0.0911 28 1 -0.3633 0.5907 0.8410 29 1 -0.3634 0.4330 -0.9320 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 4.0455 4.4965 -1.8062 33 1 2.3594 4.5420 -2.3748 34 1 2.8428 5.4880 -0.9466 35 1 3.7825 4.0877 2.4719 36 1 4.0068 5.1153 1.0359 37 1 1.3978 4.7586 2.5795 38 1 2.4656 6.1801 2.6609 39 1 1.6220 5.7862 1.1435 40 1 3.7560 -0.1904 3.2291 41 1 5.3402 1.6956 2.0168 42 1 4.9644 2.4078 3.6042 43 1 8.5310 0.0670 0.8443 44 1 5.6574 1.3909 5.7475 45 1 6.5771 -0.2079 5.7475 46 1 8.3207 0.7950 4.2012 47 1 7.4013 2.3937 4.2003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619529270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:46 Heat of formation + Delta-G solvation = -12.400393 kcal Electronic energy + Delta-G solvation = -29707.948171 eV Core-core repulsion = 25825.942056 eV Total energy + Delta-G solvation = -3882.006115 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.55347 -38.77844 -38.22106 -36.78955 -36.11783 -34.83413 -34.57355 -33.86998 -32.78989 -30.30466 -27.81490 -27.76980 -26.63058 -24.90804 -24.57843 -22.81169 -22.18433 -21.19758 -20.45143 -20.06961 -18.61004 -18.34608 -17.78854 -16.99615 -16.75772 -16.72788 -16.50129 -15.80715 -15.64678 -15.36895 -15.21210 -14.96879 -14.55491 -14.47982 -14.14659 -14.09439 -13.70248 -13.67722 -13.50863 -13.06586 -13.04960 -12.95756 -12.93444 -12.91545 -12.79458 -12.76084 -12.39749 -12.33810 -12.32543 -12.04364 -11.93001 -11.88073 -11.52296 -11.23326 -10.94437 -10.45511 -10.29479 -10.22466 -10.07969 -9.87089 -8.06931 -6.17578 -0.35582 0.50167 1.14961 1.40331 1.43206 1.45109 1.50114 2.31405 2.45088 2.89700 3.17561 3.22992 3.27170 3.57350 3.62941 3.77590 4.08268 4.14129 4.24423 4.25077 4.31150 4.35728 4.40564 4.54859 4.56255 4.61432 4.62509 4.65539 4.68332 4.75905 4.85632 4.98495 5.01626 5.06049 5.10948 5.17164 5.27287 5.31963 5.36186 5.38421 5.41125 5.70201 5.80822 5.82823 5.84516 6.30115 6.40282 6.45654 6.88813 7.50862 8.99875 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010388 B = 0.004935 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.860874 B = 5672.603503 C = 6148.038649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.065 4.065 3 C 0.156 3.844 4 N -0.320 5.320 5 N -0.361 5.361 6 C 0.079 3.921 7 C 0.214 3.786 8 C -0.090 4.090 9 C -0.140 4.140 10 C -0.834 4.834 11 S 2.733 3.267 12 O -0.983 6.983 13 O -0.976 6.976 14 N -1.100 6.100 15 C 0.178 3.822 16 C 0.007 3.993 17 C -0.500 4.500 18 H 0.057 0.943 19 C 0.032 3.968 20 N -0.902 5.902 21 Si 0.934 3.066 22 H -0.272 1.272 23 H -0.291 1.291 24 H -0.273 1.273 25 C -0.191 4.191 26 C -0.147 4.147 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.420 0.580 41 H 0.038 0.962 42 H 0.065 0.935 43 H 0.257 0.743 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.061 0.939 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.721 10.548 -4.020 15.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 C -0.013 4.013 4 N -0.140 5.140 5 N -0.137 5.137 6 C -0.061 4.061 7 C 0.078 3.922 8 C -0.129 4.129 9 C -0.198 4.198 10 C -0.933 4.933 11 S 2.822 3.178 12 O -0.974 6.974 13 O -0.966 6.966 14 N -0.860 5.860 15 C 0.051 3.949 16 C 0.005 3.995 17 C -0.538 4.538 18 H 0.075 0.925 19 C -0.168 4.168 20 N -0.540 5.540 21 Si 0.761 3.239 22 H -0.197 1.197 23 H -0.217 1.217 24 H -0.198 1.198 25 C -0.228 4.228 26 C -0.186 4.186 27 H 0.102 0.898 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.140 0.860 35 H 0.116 0.884 36 H 0.132 0.868 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.255 0.745 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.108 0.892 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.255 11.161 -5.020 16.627 hybrid contribution 1.005 -1.452 -0.580 1.859 sum -10.251 9.709 -5.600 15.189 Atomic orbital electron populations 1.21627 0.92258 1.03564 1.01815 1.20337 0.98282 0.87448 1.04349 1.22059 0.93747 0.96836 0.88666 1.77235 1.22494 0.91743 1.22480 1.49187 1.47616 1.11946 1.04979 1.22455 1.03600 0.84602 0.95404 1.21347 0.90589 0.94997 0.85295 1.20873 1.00499 0.93356 0.98169 1.21700 0.96585 0.99476 1.02030 1.31219 1.32353 1.05084 1.24649 1.00303 0.71859 0.72711 0.72915 1.93504 1.54411 1.62069 1.87375 1.93496 1.86753 1.50476 1.65896 1.55189 1.21189 1.21789 1.87815 1.20554 0.82173 0.93158 0.99007 1.19055 0.94269 0.95517 0.90678 1.20611 1.22490 0.93403 1.17307 0.92471 1.25520 0.94651 0.98767 0.97892 1.70079 1.27324 1.31520 1.25033 0.85989 0.77793 0.81738 0.78401 1.19724 1.21656 1.19848 1.23067 1.03622 1.01967 0.94174 1.22391 0.94170 0.97470 1.04566 0.89792 0.92911 0.92190 0.89016 0.89692 0.89123 0.87770 0.85978 0.88403 0.86797 0.93147 0.89031 0.91385 0.74491 0.94376 0.91653 0.93378 0.89198 0.90565 0.91983 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.55 9.89 71.98 0.71 -2.84 16 2 C -0.06 -2.00 5.78 29.84 0.17 -1.82 16 3 C 0.16 5.34 6.46 43.10 0.28 5.61 16 4 N -0.32 -10.58 12.58 -47.39 -0.60 -11.18 16 5 N -0.36 -9.87 4.01 -356.04 -1.43 -11.30 16 6 C 0.08 1.24 11.09 127.77 1.42 2.65 16 7 C 0.21 6.24 6.18 41.41 0.26 6.50 16 8 C -0.09 -2.08 5.11 29.85 0.15 -1.93 16 9 C -0.14 -2.73 9.71 71.98 0.70 -2.04 16 10 C -0.83 -28.21 6.16 21.99 0.14 -28.07 16 11 S 2.73 95.63 5.59 -56.49 -0.32 95.32 16 12 O -0.98 -36.76 15.82 -128.00 -2.02 -38.78 16 13 O -0.98 -34.68 13.86 -128.00 -1.77 -36.46 16 14 N -1.10 -41.23 5.92 -187.49 -1.11 -42.34 16 15 C 0.18 7.23 6.10 86.38 0.53 7.76 16 16 C 0.01 0.30 1.68 -52.93 -0.09 0.21 16 17 C -0.50 -25.32 8.14 25.60 0.21 -25.12 16 18 H 0.06 2.86 7.82 -2.91 -0.02 2.84 16 19 C 0.03 1.69 5.42 84.66 0.46 2.15 16 20 N -0.90 -48.88 12.43 21.45 0.27 -48.62 16 21 Si 0.93 41.98 29.54 68.60 2.03 44.01 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 C -0.19 -7.74 9.94 30.62 0.30 -7.44 16 26 C -0.15 -6.51 9.03 30.62 0.28 -6.24 16 27 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.05 1.52 7.80 -2.38 -0.02 1.50 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 31 H 0.08 2.72 6.79 -2.39 -0.02 2.70 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.12 1.12 7.66 -2.38 -0.02 1.10 16 35 H 0.10 2.62 6.32 -2.39 -0.02 2.60 16 36 H 0.11 1.88 7.72 -2.39 -0.02 1.86 16 37 H 0.05 1.22 7.25 -2.39 -0.02 1.20 16 38 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.42 15.78 8.10 -96.74 -0.78 14.99 16 41 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.07 2.41 7.46 -2.39 -0.02 2.39 16 43 H 0.26 13.57 8.32 -92.70 -0.77 12.80 16 44 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 45 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 46 H 0.06 3.04 8.03 -2.39 -0.02 3.02 16 47 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -66.73 394.61 0.74 -65.99 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: 0.19 Total: 33.97 kcal Atomic # 6 Polarization: -56.12 SS G_CDS: 5.51 Total: -50.61 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -2.87 Total: -113.44 kcal Atomic # 8 Polarization: -71.44 SS G_CDS: -3.80 Total: -75.24 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: 95.63 SS G_CDS: -0.32 Total: 95.32 kcal Total: -66.73 0.74 -65.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619529270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.592 kcal (2) G-P(sol) polarization free energy of solvation -66.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds