Wall clock time and date at job start Sat Apr 11 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81402 * 102.99961 * 2 1 4 4 C 1.50702 * 109.47335 * 180.02562 * 3 2 1 5 5 N 1.29939 * 126.29178 * 89.97484 * 4 3 2 6 6 O 1.21302 * 110.25181 * 180.02562 * 5 4 3 7 7 C 1.33637 * 109.81274 * 359.97438 * 6 5 4 8 8 C 1.50697 * 126.55130 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.47530 * 270.02861 * 8 7 6 10 10 C 1.50697 * 109.47530 * 180.02562 * 9 8 7 11 11 O 1.21287 * 119.99851 * 354.69202 * 10 9 8 12 12 N 1.34775 * 120.00363 * 174.69245 * 10 9 8 13 13 C 1.46495 * 120.00094 * 185.40573 * 12 10 9 14 14 C 1.50696 * 109.47255 * 90.00415 * 13 12 10 15 15 H 1.08000 * 119.99942 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00046 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99833 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00024 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47108 * 89.99799 * 18 16 14 20 20 H 1.48503 * 109.47287 * 209.99719 * 18 16 14 21 21 H 1.48502 * 109.47312 * 329.99548 * 18 16 14 22 22 C 1.46496 * 119.99577 * 5.40643 * 12 10 9 23 23 C 1.53008 * 109.47247 * 96.68471 * 22 12 10 24 24 C 1.52999 * 109.47091 * 174.10702 * 23 22 12 25 25 C 1.52995 * 109.46850 * 294.10658 * 23 22 12 26 26 N 1.31129 * 106.89692 * 0.22979 * 7 6 5 27 27 H 1.08998 * 109.46898 * 300.00000 * 1 2 3 28 28 H 1.08998 * 109.47181 * 59.99958 * 1 2 3 29 29 H 1.08996 * 109.46304 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47358 * 59.99894 * 3 2 1 31 31 H 1.09005 * 109.47136 * 300.00139 * 3 2 1 32 32 H 1.08999 * 109.46947 * 30.02889 * 8 7 6 33 33 H 1.09004 * 109.47265 * 150.02842 * 8 7 6 34 34 H 1.09002 * 109.46767 * 300.00439 * 9 8 7 35 35 H 1.09004 * 109.46862 * 59.99734 * 9 8 7 36 36 H 1.09004 * 109.47049 * 210.00362 * 13 12 10 37 37 H 1.08999 * 109.46920 * 329.99728 * 13 12 10 38 38 H 0.97005 * 119.99929 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.47058 * 216.68274 * 22 12 10 40 40 H 1.09000 * 109.47620 * 336.68431 * 22 12 10 41 41 H 1.08999 * 109.46834 * 54.10915 * 23 22 12 42 42 H 1.09002 * 109.47315 * 59.99900 * 24 23 22 43 43 H 1.09003 * 109.46917 * 179.97438 * 24 23 22 44 44 H 1.09000 * 109.47011 * 300.00006 * 24 23 22 45 45 H 1.09009 * 109.46838 * 184.70518 * 25 23 22 46 46 H 1.08996 * 109.47237 * 304.70437 * 25 23 22 47 47 H 1.09003 * 109.47146 * 64.71038 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9374 -0.0006 5 7 4.4833 2.0238 -1.0483 6 8 5.6418 2.1549 -0.7136 7 6 5.7297 2.1654 0.6198 8 6 6.9891 2.3075 1.4352 9 6 7.5770 0.9222 1.7112 10 6 8.8361 1.0643 2.5271 11 8 9.2777 2.1667 2.7738 12 7 9.4714 -0.0335 2.9827 13 6 10.6262 0.1051 3.8734 14 6 10.1571 0.1195 5.3055 15 1 9.1041 0.0343 5.5296 16 6 11.0722 0.2424 6.3294 17 7 12.3544 0.3467 6.0564 18 14 10.4907 0.2609 8.1044 19 1 10.4617 -1.1276 8.6303 20 1 11.4212 1.0804 8.9217 21 1 9.1269 0.8447 8.1726 22 6 9.0072 -1.3655 2.5871 23 6 9.8400 -1.8656 1.4049 24 6 9.4557 -3.3118 1.0859 25 6 9.5713 -0.9851 0.1830 26 7 4.5113 2.0229 1.0832 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8032 2.2372 0.8899 31 1 1.8031 2.2372 -0.8900 32 1 7.7136 2.9063 0.8832 33 1 6.7566 2.7985 2.3802 34 1 6.8525 0.3234 2.2631 35 1 7.8095 0.4313 0.7662 36 1 11.3049 -0.7343 3.7218 37 1 11.1460 1.0372 3.6519 38 1 12.9983 0.4328 6.7768 39 1 9.1176 -2.0528 3.4259 40 1 7.9581 -1.3131 2.2960 41 1 10.8985 -1.8190 1.6608 42 1 8.3971 -3.3585 0.8302 43 1 10.0487 -3.6679 0.2435 44 1 9.6471 -3.9391 1.9565 45 1 10.0993 -1.3905 -0.6802 46 1 8.5010 -0.9652 -0.0222 47 1 9.9223 0.0278 0.3808 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746834412.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:15 Heat of formation + Delta-G solvation = 18.418358 kcal Electronic energy + Delta-G solvation = -27597.976314 eV Core-core repulsion = 23717.306601 eV Total energy + Delta-G solvation = -3880.669713 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.80657 -39.44305 -36.46400 -36.30676 -34.78634 -33.65428 -32.31208 -31.64985 -29.94650 -29.06337 -27.87278 -27.08764 -26.00606 -25.10431 -23.74893 -22.55660 -21.36879 -20.23741 -18.57704 -18.03445 -17.80090 -16.71765 -16.60530 -16.48906 -15.54201 -15.35934 -15.15512 -14.78657 -14.50425 -14.41621 -14.19309 -14.10557 -13.85072 -13.44386 -13.20157 -13.09496 -12.82853 -12.65232 -12.60516 -12.29202 -12.11435 -11.92081 -11.69997 -11.63898 -11.32635 -11.23455 -11.11912 -10.92181 -10.83912 -10.73984 -10.61945 -10.53466 -10.38960 -10.13750 -10.00502 -9.61854 -8.98698 -8.43872 -8.13600 -7.66613 -6.04938 -4.09746 0.64038 1.16556 1.97153 2.29199 2.61420 3.22794 3.30016 3.32172 3.37335 3.42292 3.67336 3.91953 4.43487 4.49558 4.66875 4.67353 4.70473 4.81255 4.92710 5.03985 5.06870 5.11248 5.14005 5.24043 5.29362 5.36210 5.46252 5.53985 5.61545 5.71751 5.72379 5.84160 5.87226 5.92704 5.99927 6.07510 6.18201 6.27147 6.44776 6.55590 7.04751 7.44477 7.52400 7.91486 7.93604 8.22677 8.38270 8.87273 9.03651 9.55520 11.03000 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011300 B = 0.002607 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.356015 B =10737.534234 C =11328.549715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.225 6.225 3 C 0.001 3.999 4 C 0.177 3.823 5 N -0.371 5.371 6 O 0.084 5.916 7 C 0.199 3.801 8 C -0.014 4.014 9 C -0.150 4.150 10 C 0.514 3.486 11 O -0.543 6.543 12 N -0.592 5.592 13 C 0.246 3.754 14 C -0.527 4.527 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.281 1.281 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.113 3.887 23 C -0.116 4.116 24 C -0.143 4.143 25 C -0.149 4.149 26 N -0.470 5.470 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.032 0.968 37 H 0.045 0.955 38 H 0.263 0.737 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.585 -2.072 -14.942 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.001 6.001 3 C -0.148 4.148 4 C -0.096 4.096 5 N -0.079 5.079 6 O 0.023 5.977 7 C -0.021 4.021 8 C -0.054 4.054 9 C -0.191 4.191 10 C 0.300 3.700 11 O -0.421 6.421 12 N -0.322 5.322 13 C 0.127 3.873 14 C -0.566 4.566 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.011 4.011 23 C -0.136 4.136 24 C -0.201 4.201 25 C -0.206 4.206 26 N -0.204 5.204 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.125 0.875 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.134 -2.397 -15.206 23.787 hybrid contribution -1.019 0.888 1.107 1.747 sum -19.153 -1.509 -14.099 23.831 Atomic orbital electron populations 1.23461 0.93608 1.07050 1.05261 1.87338 1.07483 1.07266 1.98056 1.21411 0.88216 0.97716 1.07482 1.24663 0.98149 1.02395 0.84378 1.74640 0.89835 1.19825 1.23555 1.85322 1.22433 1.64753 1.25196 1.29031 0.97027 0.94300 0.81729 1.20085 0.86992 0.99343 0.98935 1.21950 0.97740 0.96804 1.02577 1.19921 0.84790 0.85003 0.80316 1.90685 1.67111 1.25408 1.58941 1.48153 1.32677 1.04206 1.47197 1.19278 0.82292 0.98457 0.87254 1.21435 0.93657 1.50629 0.90887 0.92436 1.24925 0.94793 0.95057 0.99280 1.69933 1.00855 1.49865 1.32630 0.86516 0.78706 0.77899 0.84423 1.20671 1.21122 1.19853 1.21582 0.97050 0.85586 0.96885 1.21556 1.01693 0.94846 0.95494 1.21765 1.01076 0.95808 1.01424 1.21979 1.00792 1.00353 0.97509 1.71943 0.99946 1.19844 1.28671 0.90016 0.90197 0.87509 0.86745 0.87343 0.86863 0.86150 0.88551 0.88105 0.94996 0.93679 0.92730 0.90089 0.91444 0.90316 0.92904 0.92808 0.92412 0.92833 0.92897 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.76 101.05 1.09 0.42 16 2 S -0.22 -2.17 22.36 -107.50 -2.40 -4.57 16 3 C 0.00 0.01 6.57 36.01 0.24 0.24 16 4 C 0.18 2.20 7.48 -156.37 -1.17 1.03 16 5 N -0.37 -4.88 12.16 30.90 0.38 -4.51 16 6 O 0.08 1.07 11.31 18.12 0.20 1.27 16 7 C 0.20 2.49 7.77 -13.06 -0.10 2.39 16 8 C -0.01 -0.18 5.15 -27.88 -0.14 -0.32 16 9 C -0.15 -2.02 4.03 -27.88 -0.11 -2.14 16 10 C 0.51 9.71 6.45 -10.99 -0.07 9.64 16 11 O -0.54 -12.42 15.54 5.55 0.09 -12.34 16 12 N -0.59 -11.71 2.26 -175.06 -0.40 -12.11 16 13 C 0.25 6.18 5.22 -5.20 -0.03 6.15 16 14 C -0.53 -14.53 9.39 -34.44 -0.32 -14.85 16 15 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 18 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.11 1.75 4.89 -4.04 -0.02 1.73 16 23 C -0.12 -1.56 3.11 -90.62 -0.28 -1.84 16 24 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 25 C -0.15 -1.81 7.59 37.16 0.28 -1.53 16 26 N -0.47 -6.36 11.55 -9.87 -0.11 -6.47 16 27 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 28 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.11 0.78 8.14 -51.92 -0.42 0.36 16 32 H 0.11 1.29 8.04 -51.93 -0.42 0.87 16 33 H 0.12 1.57 8.14 -51.93 -0.42 1.14 16 34 H 0.10 1.26 7.37 -51.93 -0.38 0.87 16 35 H 0.10 1.18 4.80 -51.93 -0.25 0.93 16 36 H 0.03 0.82 7.94 -51.93 -0.41 0.41 16 37 H 0.05 1.28 7.35 -51.93 -0.38 0.90 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.08 1.33 8.12 -51.93 -0.42 0.91 16 40 H 0.07 0.88 6.10 -51.93 -0.32 0.57 16 41 H 0.08 1.21 8.01 -51.93 -0.42 0.79 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 46 H 0.05 0.57 6.49 -51.93 -0.34 0.23 16 47 H 0.06 0.81 6.87 -51.93 -0.36 0.45 16 LS Contribution 400.99 15.07 6.04 6.04 Total: -1.00 -33.12 400.99 -8.35 -41.47 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -7.46 Total: -1.28 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -0.40 Total: 1.34 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 0.60 Total: -48.48 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.29 Total: -11.07 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -2.17 SS G_CDS: -2.40 Total: -4.57 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.12 -8.35 -41.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746834412.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.890 kcal (2) G-P(sol) polarization free energy of solvation -33.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds