Wall clock time and date at job start Sat Apr 11 2020 06:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47030 * 2 1 4 4 H 1.09004 * 109.46885 * 304.99602 * 3 2 1 5 5 C 1.50704 * 109.46992 * 185.00139 * 3 2 1 6 6 H 1.07992 * 119.99933 * 240.00086 * 5 3 2 7 7 C 1.37877 * 119.99971 * 59.99541 * 5 3 2 8 8 N 1.31521 * 120.00043 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99964 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47033 * 90.00283 * 9 7 5 11 11 H 1.48504 * 109.46922 * 210.00063 * 9 7 5 12 12 H 1.48500 * 109.47240 * 330.00077 * 9 7 5 13 13 N 1.46500 * 109.47225 * 65.00006 * 3 2 1 14 14 C 1.34767 * 120.00021 * 274.99842 * 13 3 2 15 15 O 1.21671 * 120.00265 * 3.34411 * 14 13 3 16 16 C 1.46920 * 120.00216 * 183.34834 * 14 13 3 17 17 C 1.35298 * 120.00455 * 185.25307 * 16 14 13 18 18 C 1.47105 * 120.00265 * 176.67275 * 17 16 14 19 19 C 1.39880 * 120.17172 * 213.33891 * 18 17 16 20 20 C 1.37882 * 119.81843 * 179.74054 * 19 18 17 21 21 C 1.38406 * 120.17584 * 0.51116 * 20 19 18 22 22 C 1.38411 * 120.35167 * 359.76333 * 21 20 19 23 23 C 1.37875 * 120.17851 * 359.97438 * 22 21 20 24 24 N 1.40139 * 119.99688 * 5.24782 * 16 14 13 25 25 N 1.40599 * 127.38725 * 244.74505 * 24 16 14 26 26 N 1.28954 * 106.65851 * 180.02562 * 25 24 16 27 27 N 1.28425 * 110.19985 * 0.02562 * 26 25 24 28 28 C 1.30761 * 110.64582 * 359.97438 * 27 26 25 29 29 C 1.50700 * 126.36702 * 179.73806 * 28 27 26 30 30 H 1.08999 * 109.47007 * 59.99971 * 1 2 3 31 31 H 1.09002 * 109.47357 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47087 * 299.99978 * 1 2 3 33 33 H 1.09000 * 109.46642 * 239.99552 * 2 1 3 34 34 H 1.08999 * 109.47007 * 120.00029 * 2 1 3 35 35 H 0.96996 * 119.99742 * 180.02562 * 8 7 5 36 36 H 0.96996 * 119.99853 * 95.00615 * 13 3 2 37 37 H 1.08005 * 119.99375 * 356.67116 * 17 16 14 38 38 H 1.08000 * 120.08873 * 359.97438 * 19 18 17 39 39 H 1.08005 * 119.91022 * 180.25084 * 20 19 18 40 40 H 1.07999 * 119.82583 * 179.74235 * 21 20 19 41 41 H 1.08005 * 119.90847 * 180.02562 * 22 21 20 42 42 H 1.07996 * 120.09424 * 180.02562 * 23 22 21 43 43 H 1.08998 * 109.46860 * 85.03913 * 29 28 27 44 44 H 1.08995 * 109.46934 * 205.04055 * 29 28 27 45 45 H 1.09003 * 109.46422 * 325.04257 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3373 -2.1733 9 14 6.0049 0.8812 -1.3819 10 1 6.5548 -0.3502 -0.7602 11 1 6.3828 0.9222 -2.8174 12 1 6.5569 2.0738 -0.6904 13 7 1.6524 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3643 2.5796 0.4537 16 6 0.0736 3.3850 2.5952 17 6 -1.1823 3.8622 2.7547 18 6 -1.5651 4.5191 4.0141 19 6 -2.8705 4.3977 4.5018 20 6 -3.2200 5.0121 5.6857 21 6 -2.2860 5.7560 6.3856 22 6 -0.9939 5.8856 5.9067 23 6 -0.6272 5.2730 4.7272 24 7 1.0296 3.5779 3.6015 25 7 1.0122 3.0560 4.9069 26 7 2.0797 3.4837 5.4903 27 7 2.7606 4.2179 4.6862 28 6 2.1647 4.3059 3.5256 29 6 2.6507 5.0811 2.3281 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8292 -0.0612 -2.9499 36 1 2.2720 2.1232 1.9977 37 1 -1.9038 3.7608 1.9574 38 1 -3.6016 3.8212 3.9545 39 1 -4.2264 4.9159 6.0657 40 1 -2.5670 6.2382 7.3102 41 1 -0.2707 6.4675 6.4589 42 1 0.3815 5.3747 4.3549 43 1 3.3517 4.4699 1.7598 44 1 1.8021 5.3433 1.6964 45 1 3.1498 5.9907 2.6624 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762720076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:17 Heat of formation + Delta-G solvation = 134.595597 kcal Electronic energy + Delta-G solvation = -30304.877005 eV Core-core repulsion = 26326.093915 eV Total energy + Delta-G solvation = -3978.783090 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.29218 -39.82620 -39.18460 -36.26382 -35.32053 -33.52962 -32.71241 -32.36120 -31.24626 -31.09204 -29.81058 -28.57308 -27.22629 -25.04042 -23.60890 -23.02895 -22.84859 -22.05935 -21.45023 -19.92668 -19.63466 -18.61968 -17.17299 -16.99099 -16.14516 -15.64094 -15.48851 -15.22542 -15.01414 -14.92777 -14.54230 -14.39352 -13.85589 -13.70861 -13.64968 -13.27955 -13.21156 -13.02201 -12.79348 -12.58378 -12.27952 -12.14753 -11.78692 -11.67047 -11.43842 -11.37119 -11.22574 -11.08873 -10.94499 -10.91289 -10.47065 -10.33500 -10.23100 -10.09019 -9.76229 -9.42421 -9.21834 -9.20979 -8.65040 -8.63201 -8.10186 -6.24545 -4.35264 0.14875 0.95422 1.12713 1.55752 1.79950 2.28637 3.18142 3.25815 3.26755 3.28916 3.46364 3.65969 3.92818 4.24090 4.43138 4.49867 4.59065 4.64014 4.79736 4.92565 5.07356 5.09035 5.11367 5.21193 5.32612 5.38231 5.43311 5.49075 5.57323 5.61843 5.73101 5.80979 6.11788 6.18408 6.20782 6.28378 6.34008 6.41769 6.52467 6.63814 6.91013 7.02952 7.08865 7.23190 7.44215 7.54593 7.71881 8.01693 8.32732 8.46605 8.51938 8.76092 9.32328 10.80536 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016381 B = 0.003544 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.911886 B = 7899.296116 C = 9012.404679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.272 3.728 4 H 0.055 0.945 5 C -0.539 4.539 6 H 0.060 0.940 7 C 0.070 3.930 8 N -0.879 5.879 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.693 5.693 14 C 0.548 3.452 15 O -0.525 6.525 16 C 0.032 3.968 17 C 0.012 3.988 18 C -0.080 4.080 19 C -0.087 4.087 20 C -0.122 4.122 21 C -0.104 4.104 22 C -0.117 4.117 23 C -0.094 4.094 24 N -0.331 5.331 25 N -0.069 5.069 26 N -0.041 5.041 27 N -0.332 5.332 28 C 0.257 3.743 29 C -0.087 4.087 30 H 0.051 0.949 31 H 0.024 0.976 32 H 0.037 0.963 33 H 0.102 0.898 34 H 0.031 0.969 35 H 0.266 0.734 36 H 0.386 0.614 37 H 0.171 0.829 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.089 0.911 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.822 11.121 11.369 18.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C 0.171 3.829 4 H 0.073 0.927 5 C -0.577 4.577 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.516 5.516 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.339 5.339 14 C 0.330 3.670 15 O -0.403 6.403 16 C -0.061 4.061 17 C -0.010 4.010 18 C -0.080 4.080 19 C -0.105 4.105 20 C -0.140 4.140 21 C -0.122 4.122 22 C -0.135 4.135 23 C -0.113 4.113 24 N -0.126 5.126 25 N -0.053 5.053 26 N -0.036 5.036 27 N -0.183 5.183 28 C -0.019 4.019 29 C -0.147 4.147 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.120 0.880 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.218 0.782 37 H 0.188 0.812 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.108 0.892 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.172 10.468 11.811 18.776 hybrid contribution 1.059 -0.091 -0.494 1.172 sum -9.113 10.378 11.317 17.855 Atomic orbital electron populations 1.21865 0.98159 0.98287 1.01198 1.21962 0.92786 0.99552 1.02530 1.18941 0.94593 0.89399 0.79929 0.92728 1.21151 0.90306 1.39834 1.06448 0.92138 1.24856 0.98739 0.94519 0.95240 1.69881 1.35278 1.37136 1.09316 0.86449 0.84598 0.78671 0.77464 1.20486 1.20959 1.19687 1.46562 1.13812 1.54698 1.18829 1.17583 0.83921 0.80289 0.85172 1.90863 1.49612 1.61176 1.38693 1.20388 0.89647 1.07415 0.88687 1.22801 0.94277 0.88344 0.95589 1.18895 0.94590 0.99768 0.94785 1.21309 0.94608 0.98268 0.96289 1.21096 0.99811 0.97872 0.95247 1.21314 0.93294 0.98026 0.99530 1.21065 0.96616 0.99824 0.96002 1.21488 0.98465 0.96386 0.94932 1.48916 1.17531 1.35174 1.10996 1.82775 1.16981 1.18100 0.87491 1.78016 0.98511 1.05393 1.21700 1.74501 1.25398 1.19094 0.99352 1.25984 0.84348 0.93542 0.97988 1.20661 1.03498 0.99933 0.90568 0.92959 0.95690 0.94351 0.87963 0.95029 0.92381 0.78219 0.81212 0.85074 0.85463 0.85759 0.85866 0.86993 0.86815 0.89199 0.87653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.48 37.16 0.31 -2.61 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.36 2.24 -69.08 -0.15 6.20 16 4 H 0.05 1.44 7.63 -51.93 -0.40 1.05 16 5 C -0.54 -13.38 8.73 -34.44 -0.30 -13.68 16 6 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -23.39 11.30 55.43 0.63 -22.77 16 9 Si 0.90 19.85 29.54 -169.99 -5.02 14.82 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 13 N -0.69 -13.50 4.97 -56.17 -0.28 -13.78 16 14 C 0.55 9.83 6.43 -12.75 -0.08 9.75 16 15 O -0.53 -10.56 13.14 5.21 0.07 -10.49 16 16 C 0.03 0.48 5.70 -81.59 -0.47 0.01 16 17 C 0.01 0.15 9.39 -37.03 -0.35 -0.19 16 18 C -0.08 -0.95 5.53 -105.07 -0.58 -1.53 16 19 C -0.09 -0.86 9.80 -39.10 -0.38 -1.24 16 20 C -0.12 -1.08 10.03 -39.65 -0.40 -1.47 16 21 C -0.10 -0.95 10.04 -39.46 -0.40 -1.34 16 22 C -0.12 -1.26 10.03 -39.65 -0.40 -1.66 16 23 C -0.09 -1.16 7.52 -39.10 -0.29 -1.45 16 24 N -0.33 -4.88 1.39 -6.71 -0.01 -4.89 16 25 N -0.07 -1.12 12.09 60.35 0.73 -0.39 16 26 N -0.04 -0.69 13.39 60.35 0.81 0.12 16 27 N -0.33 -5.17 12.15 32.76 0.40 -4.78 16 28 C 0.26 3.59 5.59 -155.17 -0.87 2.72 16 29 C -0.09 -0.96 10.27 36.01 0.37 -0.59 16 30 H 0.05 1.15 7.81 -51.93 -0.41 0.75 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.79 5.57 -51.92 -0.29 0.50 16 33 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 36 H 0.39 7.25 7.23 -40.82 -0.30 6.96 16 37 H 0.17 1.89 7.54 -52.48 -0.40 1.49 16 38 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 40 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 42 H 0.11 1.47 4.62 -52.49 -0.24 1.23 16 43 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.09 0.93 7.81 -51.93 -0.41 0.52 16 45 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 374.79 15.07 5.65 5.65 Total: -1.00 -29.07 374.79 -6.92 -35.99 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -5.66 Total: 9.08 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -4.22 Total: -8.55 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 2.27 Total: -46.49 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.07 Total: -10.49 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.07 -6.92 -35.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762720076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.582 kcal (2) G-P(sol) polarization free energy of solvation -29.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds