Wall clock time and date at job start Sat Apr 11 2020 06:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47030 * 2 1 4 4 H 1.09004 * 109.46885 * 304.99602 * 3 2 1 5 5 C 1.50704 * 109.46992 * 185.00139 * 3 2 1 6 6 H 1.07992 * 119.99933 * 240.00086 * 5 3 2 7 7 C 1.37877 * 119.99971 * 59.99541 * 5 3 2 8 8 N 1.31521 * 120.00043 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99964 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47033 * 90.00283 * 9 7 5 11 11 H 1.48504 * 109.46922 * 210.00063 * 9 7 5 12 12 H 1.48500 * 109.47240 * 330.00077 * 9 7 5 13 13 N 1.46500 * 109.47225 * 65.00006 * 3 2 1 14 14 C 1.34767 * 120.00021 * 274.99842 * 13 3 2 15 15 O 1.21671 * 120.00265 * 3.34411 * 14 13 3 16 16 C 1.46920 * 120.00216 * 183.34834 * 14 13 3 17 17 C 1.35298 * 120.00455 * 185.25307 * 16 14 13 18 18 C 1.47105 * 120.00265 * 176.67275 * 17 16 14 19 19 C 1.39880 * 120.17172 * 213.33891 * 18 17 16 20 20 C 1.37882 * 119.81843 * 179.74054 * 19 18 17 21 21 C 1.38406 * 120.17584 * 0.51116 * 20 19 18 22 22 C 1.38411 * 120.35167 * 359.76333 * 21 20 19 23 23 C 1.37875 * 120.17851 * 359.97438 * 22 21 20 24 24 N 1.40139 * 119.99688 * 5.24782 * 16 14 13 25 25 N 1.40599 * 127.38725 * 244.74505 * 24 16 14 26 26 N 1.28954 * 106.65851 * 180.02562 * 25 24 16 27 27 N 1.28425 * 110.19985 * 0.02562 * 26 25 24 28 28 C 1.30761 * 110.64582 * 359.97438 * 27 26 25 29 29 C 1.50700 * 126.36702 * 179.73806 * 28 27 26 30 30 H 1.08999 * 109.47007 * 59.99971 * 1 2 3 31 31 H 1.09002 * 109.47357 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47087 * 299.99978 * 1 2 3 33 33 H 1.09000 * 109.46642 * 239.99552 * 2 1 3 34 34 H 1.08999 * 109.47007 * 120.00029 * 2 1 3 35 35 H 0.96996 * 119.99742 * 180.02562 * 8 7 5 36 36 H 0.96996 * 119.99853 * 95.00615 * 13 3 2 37 37 H 1.08005 * 119.99375 * 356.67116 * 17 16 14 38 38 H 1.08000 * 120.08873 * 359.97438 * 19 18 17 39 39 H 1.08005 * 119.91022 * 180.25084 * 20 19 18 40 40 H 1.07999 * 119.82583 * 179.74235 * 21 20 19 41 41 H 1.08005 * 119.90847 * 180.02562 * 22 21 20 42 42 H 1.07996 * 120.09424 * 180.02562 * 23 22 21 43 43 H 1.08998 * 109.46860 * 85.03913 * 29 28 27 44 44 H 1.08995 * 109.46934 * 205.04055 * 29 28 27 45 45 H 1.09003 * 109.46422 * 325.04257 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3373 -2.1733 9 14 6.0049 0.8812 -1.3819 10 1 6.5548 -0.3502 -0.7602 11 1 6.3828 0.9222 -2.8174 12 1 6.5569 2.0738 -0.6904 13 7 1.6524 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3643 2.5796 0.4537 16 6 0.0736 3.3850 2.5952 17 6 -1.1823 3.8622 2.7547 18 6 -1.5651 4.5191 4.0141 19 6 -2.8705 4.3977 4.5018 20 6 -3.2200 5.0121 5.6857 21 6 -2.2860 5.7560 6.3856 22 6 -0.9939 5.8856 5.9067 23 6 -0.6272 5.2730 4.7272 24 7 1.0296 3.5779 3.6015 25 7 1.0122 3.0560 4.9069 26 7 2.0797 3.4837 5.4903 27 7 2.7606 4.2179 4.6862 28 6 2.1647 4.3059 3.5256 29 6 2.6507 5.0811 2.3281 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8292 -0.0612 -2.9499 36 1 2.2720 2.1232 1.9977 37 1 -1.9038 3.7608 1.9574 38 1 -3.6016 3.8212 3.9545 39 1 -4.2264 4.9159 6.0657 40 1 -2.5670 6.2382 7.3102 41 1 -0.2707 6.4675 6.4589 42 1 0.3815 5.3747 4.3549 43 1 3.3517 4.4699 1.7598 44 1 1.8021 5.3433 1.6964 45 1 3.1498 5.9907 2.6624 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762720076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:17 Heat of formation + Delta-G solvation = 118.510706 kcal Electronic energy + Delta-G solvation = -30305.574499 eV Core-core repulsion = 26326.093915 eV Total energy + Delta-G solvation = -3979.480584 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.44359 -41.14867 -40.16064 -37.51537 -36.93240 -34.67412 -34.29306 -33.54866 -32.85952 -31.98634 -30.86104 -29.59879 -29.01600 -26.21177 -25.16444 -24.35344 -23.74406 -23.17228 -22.63398 -21.45016 -21.05294 -19.98501 -18.39396 -18.10507 -17.57164 -17.19910 -16.55018 -16.46971 -16.38516 -16.12084 -15.97362 -15.33459 -15.28956 -14.81432 -14.63982 -14.45495 -14.28772 -14.19936 -13.97081 -13.83323 -13.58029 -13.54122 -13.20624 -13.19517 -12.96438 -12.73648 -12.66103 -12.29560 -12.22309 -12.16963 -12.10851 -12.06822 -11.62491 -11.31099 -11.24395 -11.10694 -10.83275 -10.56522 -9.99604 -9.85973 -9.50413 -8.19215 -6.35964 -0.86300 -0.15916 0.35683 0.60049 0.71419 1.11425 1.43324 1.45420 1.54264 1.89870 2.17523 2.43996 2.75359 2.89281 3.11082 3.35077 3.44412 3.70651 3.76565 3.89827 3.96658 4.13938 4.23137 4.30343 4.34389 4.44521 4.46180 4.47920 4.54969 4.58224 4.65364 4.71692 4.81331 4.89595 4.97504 5.03016 5.20086 5.29317 5.36928 5.37725 5.40812 5.43424 5.45726 5.54997 5.71832 5.80705 5.90057 6.10734 6.64574 6.71715 7.12334 7.28779 7.36785 8.85753 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016381 B = 0.003544 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.911886 B = 7899.296116 C = 9012.404679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.125 4.125 3 C 0.284 3.716 4 H 0.019 0.981 5 C -0.549 4.549 6 H 0.066 0.934 7 C 0.025 3.975 8 N -0.908 5.908 9 Si 0.962 3.038 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.263 1.263 13 N -0.696 5.696 14 C 0.556 3.444 15 O -0.550 6.550 16 C 0.002 3.998 17 C 0.053 3.947 18 C -0.106 4.106 19 C -0.084 4.084 20 C -0.122 4.122 21 C -0.096 4.096 22 C -0.133 4.133 23 C -0.107 4.107 24 N -0.323 5.323 25 N -0.083 5.083 26 N -0.055 5.055 27 N -0.345 5.345 28 C 0.261 3.739 29 C -0.086 4.086 30 H 0.037 0.963 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.028 0.972 35 H 0.266 0.734 36 H 0.389 0.611 37 H 0.185 0.815 38 H 0.154 0.846 39 H 0.159 0.841 40 H 0.152 0.848 41 H 0.129 0.871 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.094 12.251 12.945 20.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.164 4.164 3 C 0.181 3.819 4 H 0.037 0.963 5 C -0.587 4.587 6 H 0.084 0.916 7 C -0.176 4.176 8 N -0.546 5.546 9 Si 0.787 3.213 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.187 1.187 13 N -0.342 5.342 14 C 0.341 3.659 15 O -0.430 6.430 16 C -0.091 4.091 17 C 0.031 3.969 18 C -0.107 4.107 19 C -0.101 4.101 20 C -0.140 4.140 21 C -0.114 4.114 22 C -0.151 4.151 23 C -0.126 4.126 24 N -0.117 5.117 25 N -0.067 5.067 26 N -0.050 5.050 27 N -0.197 5.197 28 C -0.014 4.014 29 C -0.145 4.145 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.222 0.778 37 H 0.202 0.798 38 H 0.171 0.829 39 H 0.177 0.823 40 H 0.170 0.830 41 H 0.147 0.853 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.114 0.886 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.451 11.617 13.416 21.120 hybrid contribution 1.290 -0.341 -0.901 1.610 sum -10.161 11.276 12.515 19.673 Atomic orbital electron populations 1.21703 0.96464 0.99269 1.00655 1.21839 0.94254 0.99304 1.01025 1.18488 0.93801 0.89111 0.80456 0.96317 1.21457 0.91237 1.39473 1.06541 0.91633 1.25619 1.02745 0.94263 0.95020 1.70008 1.36875 1.37946 1.09792 0.85494 0.79739 0.78764 0.77295 1.20497 1.20925 1.18683 1.46274 1.14793 1.55399 1.17715 1.17833 0.82801 0.79415 0.85859 1.90843 1.50092 1.62052 1.40009 1.19791 0.90731 1.10517 0.88096 1.23102 0.93161 0.84715 0.95921 1.18960 0.95732 1.01106 0.94854 1.21651 0.93919 0.97814 0.96754 1.21512 1.01194 0.96736 0.94543 1.21709 0.92441 0.97057 1.00183 1.21263 0.97846 1.00245 0.95785 1.21495 0.97996 0.97341 0.95752 1.48772 1.17678 1.34823 1.10469 1.82705 1.17093 1.18526 0.88424 1.77987 0.98818 1.05935 1.22280 1.74458 1.25808 1.19528 0.99923 1.26428 0.83930 0.92956 0.98123 1.20814 1.03679 1.00471 0.89570 0.94334 0.93882 0.93913 0.90494 0.95298 0.92455 0.77798 0.79778 0.82878 0.82298 0.83015 0.85334 0.88463 0.87690 0.88553 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.28 8.48 71.98 0.61 -4.67 16 2 C -0.13 -5.99 5.45 30.60 0.17 -5.82 16 3 C 0.28 13.63 2.24 44.25 0.10 13.73 16 4 H 0.02 1.04 7.63 -2.39 -0.02 1.02 16 5 C -0.55 -27.67 8.73 25.60 0.22 -27.45 16 6 H 0.07 3.16 7.74 -2.91 -0.02 3.14 16 7 C 0.02 1.27 5.29 84.65 0.45 1.72 16 8 N -0.91 -49.48 11.30 21.45 0.24 -49.24 16 9 Si 0.96 40.86 29.54 68.60 2.03 42.88 16 10 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 12 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 13 N -0.70 -27.58 4.97 -449.84 -2.24 -29.82 16 14 C 0.56 20.06 6.43 86.52 0.56 20.62 16 15 O -0.55 -22.30 13.14 -4.26 -0.06 -22.35 16 16 C 0.00 0.07 5.70 39.41 0.22 0.29 16 17 C 0.05 1.26 9.39 23.92 0.22 1.48 16 18 C -0.11 -2.31 5.53 -20.16 -0.11 -2.43 16 19 C -0.08 -1.39 9.80 22.58 0.22 -1.16 16 20 C -0.12 -1.68 10.03 22.23 0.22 -1.45 16 21 C -0.10 -1.44 10.04 22.35 0.22 -1.22 16 22 C -0.13 -2.64 10.03 22.22 0.22 -2.42 16 23 C -0.11 -2.52 7.52 22.58 0.17 -2.35 16 24 N -0.32 -9.45 1.39 -175.14 -0.24 -9.69 16 25 N -0.08 -2.68 12.09 37.02 0.45 -2.24 16 26 N -0.06 -1.84 13.39 37.02 0.50 -1.34 16 27 N -0.35 -10.73 12.15 -50.28 -0.61 -11.34 16 28 C 0.26 7.23 5.59 138.04 0.77 8.01 16 29 C -0.09 -1.85 10.27 71.24 0.73 -1.12 16 30 H 0.04 1.72 7.81 -2.39 -0.02 1.70 16 31 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.04 1.76 5.57 -2.38 -0.01 1.75 16 33 H 0.08 4.10 5.95 -2.39 -0.01 4.08 16 34 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 36 H 0.39 14.87 7.23 -92.71 -0.67 14.20 16 37 H 0.19 3.75 7.54 -2.91 -0.02 3.73 16 38 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 39 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 40 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 41 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 42 H 0.10 2.53 4.62 -2.91 -0.01 2.51 16 43 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.10 1.95 7.81 -2.39 -0.02 1.93 16 45 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -63.92 374.79 5.44 -58.48 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.37 Total: 28.90 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 5.01 Total: -4.24 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -1.90 Total: -103.67 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.06 Total: -22.35 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.88 kcal Total: -63.92 5.44 -58.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762720076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.988 kcal (2) G-P(sol) polarization free energy of solvation -63.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds